mRNA_H-elongata_contig152723.3484.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig152723.3484.1
Unique NamemRNA_H-elongata_contig152723.3484.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig152723.3484.1 vs. uniprot
Match: A0A6H5JEX7_9PHAE (Reverse transcriptase domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEX7_9PHAE)

HSP 1 Score: 62.0 bits (149), Expect = 5.210e-8
Identity = 28/64 (43.75%), Postives = 41/64 (64.06%), Query Frame = 1 
Query:  337 LACQLFHSTYKRRGVLFVGFVARMDDTRLPKCVMFREIMGGAGRVGGRKKSGWM-CLLEDLKVF 525
            + CQ   +T ++R +LF G VAR  D RLPK +MF E++GG G   G  +  W+ CL +D+K+F
Sbjct:  635 VGCQSVEATVRQRRLLFAGAVARQPDGRLPKRLMFGELVGGEGPGQGNPEQNWLTCLKDDMKMF 698
[Close]
BLAST of mRNA_H-elongata_contig152723.3484.1 vs. uniprot
Match: A0A6H5JKI4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKI4_9PHAE)

HSP 1 Score: 61.2 bits (147), Expect = 9.470e-8
Identity = 29/64 (45.31%), Postives = 40/64 (62.50%), Query Frame = 1 
Query:  337 LACQLFHSTYKRRGVLFVGFVARMDDTRLPKCVMFREIMGGAGRVGGRKKSGWM-CLLEDLKVF 525
            + CQ   +T ++R VLF G VAR  D RLPK +MF E++GG     G  +  W+ CL +DLK+F
Sbjct:  573 VGCQSVEATVRQRRVLFAGAVARQPDGRLPKRLMFGELVGGENPGRGSPEQNWLICLKDDLKMF 636
[Close]
BLAST of mRNA_H-elongata_contig152723.3484.1 vs. uniprot
Match: A0A6H5KA81_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA81_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 2.300e-7
Identity = 28/64 (43.75%), Postives = 40/64 (62.50%), Query Frame = 1 
Query:  337 LACQLFHSTYKRRGVLFVGFVARMDDTRLPKCVMFREIMGGAGRVGGRKKSGWM-CLLEDLKVF 525
            + CQ   +T ++R +LF G VAR  D RLPK +MF E++GG     G  +  W+ CL +DLK+F
Sbjct:  467 VGCQSVEATVRQRRLLFAGAVARQPDGRLPKRLMFGELVGGENPGRGSPEQNWLICLKDDLKMF 530
[Close]
BLAST of mRNA_H-elongata_contig152723.3484.1 vs. uniprot
Match: A0A6H5JLH5_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLH5_9PHAE)

HSP 1 Score: 59.3 bits (142), Expect = 2.410e-7
Identity = 27/64 (42.19%), Postives = 40/64 (62.50%), Query Frame = 1 
Query:  337 LACQLFHSTYKRRGVLFVGFVARMDDTRLPKCVMFREIMGGAGRVGGRKKSGWM-CLLEDLKVF 525
            + CQ   +T ++R +LF G VAR  D RLPK +MF E++GG     G  +  W+ CL +D+K+F
Sbjct:  165 VGCQSVEATVRQRRLLFAGAVARQPDGRLPKRLMFGELVGGEDPGQGNPEQNWLTCLKDDMKMF 228
[Close]
BLAST of mRNA_H-elongata_contig152723.3484.1 vs. uniprot
Match: A0A6H5K4M0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4M0_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 2.580e-7
Identity = 28/64 (43.75%), Postives = 40/64 (62.50%), Query Frame = 1 
Query:  337 LACQLFHSTYKRRGVLFVGFVARMDDTRLPKCVMFREIMGGAGRVGGRKKSGWM-CLLEDLKVF 525
            + CQ   +T ++R +LF G VAR  D RLPK +MF E++GG     G  +  W+ CL +DLK+F
Sbjct:  165 VGCQSVEATVRQRRLLFAGAVARQPDGRLPKRLMFGELVGGENPGRGSPEQNWLICLKDDLKMF 228
[Close]
BLAST of mRNA_H-elongata_contig152723.3484.1 vs. uniprot
Match: A0A6H5KF72_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF72_9PHAE)

HSP 1 Score: 58.5 bits (140), Expect = 2.710e-7
Identity = 27/64 (42.19%), Postives = 40/64 (62.50%), Query Frame = 1 
Query:  337 LACQLFHSTYKRRGVLFVGFVARMDDTRLPKCVMFREIMGGAGRVGGRKKSGWM-CLLEDLKVF 525
            + CQ   +T ++R +LF G +AR  D RLPK +MF E++GG     G  +  W+ CL +DLK+F
Sbjct:   46 VGCQSVEATVRQRCLLFAGAMARQPDGRLPKRLMFGELVGGENPGRGSPEQNWLICLKDDLKMF 109
[Close]
BLAST of mRNA_H-elongata_contig152723.3484.1 vs. uniprot
Match: A0A6H5KLX9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLX9_9PHAE)

HSP 1 Score: 59.3 bits (142), Expect = 3.090e-7
Identity = 27/64 (42.19%), Postives = 40/64 (62.50%), Query Frame = 1 
Query:  337 LACQLFHSTYKRRGVLFVGFVARMDDTRLPKCVMFREIMGGAGRVGGRKKSGWM-CLLEDLKVF 525
            + CQ   +T ++R +LF G VAR  D RLPK +MF E++GG     G  +  W+ CL +D+K+F
Sbjct:  216 VGCQSVEATVRQRRLLFAGAVARQPDGRLPKRLMFGELVGGEDPGQGNPEQNWLTCLKDDMKMF 279
[Close]
BLAST of mRNA_H-elongata_contig152723.3484.1 vs. uniprot
Match: A0A6H5JWS4_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWS4_9PHAE)

HSP 1 Score: 59.3 bits (142), Expect = 3.420e-7
Identity = 27/64 (42.19%), Postives = 40/64 (62.50%), Query Frame = 1 
Query:  337 LACQLFHSTYKRRGVLFVGFVARMDDTRLPKCVMFREIMGGAGRVGGRKKSGWM-CLLEDLKVF 525
            + CQ   +T ++R +LF G VAR  D RLPK +MF E++GG     G  +  W+ CL +D+K+F
Sbjct:  184 VGCQSVEATVRQRRLLFAGAVARQPDGRLPKRLMFGELVGGEDPGQGNPEQNWLTCLKDDMKMF 247
[Close]
BLAST of mRNA_H-elongata_contig152723.3484.1 vs. uniprot
Match: A0A6H5KLC4_9PHAE (Reverse transcriptase domain-containing protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLC4_9PHAE)

HSP 1 Score: 59.3 bits (142), Expect = 3.930e-7
Identity = 27/64 (42.19%), Postives = 40/64 (62.50%), Query Frame = 1 
Query:  337 LACQLFHSTYKRRGVLFVGFVARMDDTRLPKCVMFREIMGGAGRVGGRKKSGWM-CLLEDLKVF 525
            + CQ   +T ++R +LF G VAR  D RLPK +MF E++GG     G  +  W+ CL +D+K+F
Sbjct:  306 VGCQSVEATVRQRRLLFAGAVARQPDGRLPKRLMFGELVGGEDPGQGNPEQNWLTCLKDDMKMF 369
[Close]
BLAST of mRNA_H-elongata_contig152723.3484.1 vs. uniprot
Match: A0A6H5K9G5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9G5_9PHAE)

HSP 1 Score: 59.3 bits (142), Expect = 4.260e-7
Identity = 27/64 (42.19%), Postives = 40/64 (62.50%), Query Frame = 1 
Query:  337 LACQLFHSTYKRRGVLFVGFVARMDDTRLPKCVMFREIMGGAGRVGGRKKSGWM-CLLEDLKVF 525
            + CQ   +T ++R +LF G VAR  D RLPK +MF E++GG     G  +  W+ CL +D+K+F
Sbjct:  490 VGCQSVEATVRQRRLLFAGAVARQPDGRLPKRLMFGELVGGEDPGQGNPEQNWLTCLKDDMKMF 553
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig152723.3484.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 19
Match NameE-valueIdentityDescription
A0A6H5JEX7_9PHAE5.210e-843.75Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JKI4_9PHAE9.470e-845.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KA81_9PHAE2.300e-743.75Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JLH5_9PHAE2.410e-742.19Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K4M0_9PHAE2.580e-743.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KF72_9PHAE2.710e-742.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KLX9_9PHAE3.090e-742.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JWS4_9PHAE3.420e-742.19Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KLC4_9PHAE3.930e-742.19Reverse transcriptase domain-containing protein n=... [more]
A0A6H5K9G5_9PHAE4.260e-742.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig152723contigH-elongata_contig152723:1022..1555 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size535
Cds size534
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929903.0292048-CDS-H-elongata_contig152723:1021..15551622929903.0292048-CDS-H-elongata_contig152723:1021..1555Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig152723 1022..1555 +
1691679201.7923765-CDS-H-elongata_contig152723:1021..15551691679201.7923765-CDS-H-elongata_contig152723:1021..1555Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig152723 1022..1555 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig152723.3484.1prot_H-elongata_contig152723.3484.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig152723 1022..1555 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig152723.3484.1

>prot_H-elongata_contig152723.3484.1 ID=prot_H-elongata_contig152723.3484.1|Name=mRNA_H-elongata_contig152723.3484.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=178bp
GGVSNVHLPYKPSILGMLWLSPSKLFSFLFLSMGTLRAIFMCFCFCIHVL
YLFISVSLLSEPQTSGVGKYGIVGISLLFLLYYSNNKQNICSPNCDKQIN
PRLMEACFKGTTLACQLFHSTYKRRGVLFVGFVARMDDTRLPKCVMFREI
MGGAGRVGGRKKSGWMCLLEDLKVFGIN
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mRNA from alignment at H-elongata_contig152723:1022..1555+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig152723.3484.1 ID=mRNA_H-elongata_contig152723.3484.1|Name=mRNA_H-elongata_contig152723.3484.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=534bp|location=Sequence derived from alignment at H-elongata_contig152723:1022..1555+ (Himanthalia elongata Himel1 dioecious)
GGGGGTGTCTCGAACGTGCACCTACCGTACAAGCCTTCAATTTTGGGCAT
GTTATGGTTATCCCCATCGAAGCTTTTTTCCTTTTTATTTTTGTCTATGG
GTACACTTCGCGCGATTTTTATGTGCTTTTGTTTTTGTATTCATGTCTTG
TATTTATTTATTTCTGTTTCCCTGCTTAGCGAACCACAAACAAGCGGGGT
TGGGAAGTATGGTATAGTAGGCATATCTCTATTATTTTTGTTATATTATT
CCAACAACAAGCAAAACATTTGCTCTCCCAACTGCGACAAACAAATTAAT
CCAAGGCTAATGGAAGCTTGTTTCAAAGGGACAACTCTAGCGTGCCAACT
CTTTCATAGTACATATAAGCGGCGAGGAGTTCTGTTCGTGGGGTTCGTGG
CGCGCATGGACGACACGAGACTGCCGAAGTGTGTGATGTTCAGAGAAATC
ATGGGGGGCGCGGGTCGCGTGGGGGGCAGGAAAAAGAGTGGATGGATGTG
TCTTCTGGAAGACCTCAAAGTTTTCGGTATCAAC
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Coding sequence (CDS) from alignment at H-elongata_contig152723:1022..1555+

>mRNA_H-elongata_contig152723.3484.1 ID=mRNA_H-elongata_contig152723.3484.1|Name=mRNA_H-elongata_contig152723.3484.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1068bp|location=Sequence derived from alignment at H-elongata_contig152723:1022..1555+ (Himanthalia elongata Himel1 dioecious)
GGGGGTGTCTCGAACGTGCACCTACCGTACAAGCCTTCAATTTTGGGCAT
GTTATGGTTATCCCCATCGAAGCTTTTTTCCTTTTTATTTTTGTCTATGG
GTACACTTCGCGCGATTTTTATGTGCTTTTGTTTTTGTATTCATGTCTTG
TATTTATTTATTTCTGTTTCCCTGCTTAGCGAACCACAAACAAGCGGGGT
TGGGAAGTATGGTATAGTAGGCATATCTCTATTATTTTTGTTATATTATT
CCAACAACAAGCAAAACATTTGCTCTCCCAACTGCGACAAACAAATTAAT
CCAAGGCTAATGGAAGCTTGTTTCAAAGGGACAACTCTAGCGTGCCAACT
CTTTCATAGTACATATAAGCGGCGAGGAGTTCTGTTCGTGGGGTTCGTGG
CGCGCATGGACGACACGAGACTGCCGAAGTGTGTGATGTTCAGAGAAATC
ATGGGGGGCGCGGGTCGCGTGGGGGGCAGGAAAAAGAGTGGATGGATGTG
TCTTCTGGAAGACCTCAAAGTTTTCGGTATCAACGGGGGTGTCTCGAACG
TGCACCTACCGTACAAGCCTTCAATTTTGGGCATGTTATGGTTATCCCCA
TCGAAGCTTTTTTCCTTTTTATTTTTGTCTATGGGTACACTTCGCGCGAT
TTTTATGTGCTTTTGTTTTTGTATTCATGTCTTGTATTTATTTATTTCTG
TTTCCCTGCTTAGCGAACCACAAACAAGCGGGGTTGGGAAGTATGGTATA
GTAGGCATATCTCTATTATTTTTGTTATATTATTCCAACAACAAGCAAAA
CATTTGCTCTCCCAACTGCGACAAACAAATTAATCCAAGGCTAATGGAAG
CTTGTTTCAAAGGGACAACTCTAGCGTGCCAACTCTTTCATAGTACATAT
AAGCGGCGAGGAGTTCTGTTCGTGGGGTTCGTGGCGCGCATGGACGACAC
GAGACTGCCGAAGTGTGTGATGTTCAGAGAAATCATGGGGGGCGCGGGTC
GCGTGGGGGGCAGGAAAAAGAGTGGATGGATGTGTCTTCTGGAAGACCTC
AAAGTTTTCGGTATCAAC
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