mRNA_H-elongata_contig152562.3469.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig152562.3469.1
Unique NamemRNA_H-elongata_contig152562.3469.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig152562.3469.1 vs. uniprot
Match: D7FXQ9_ECTSI (Aspartokinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXQ9_ECTSI)

HSP 1 Score: 92.0 bits (227), Expect = 1.500e-20
Identity = 42/46 (91.30%), Postives = 44/46 (95.65%), Query Frame = 1 
Query:   19 LQVWKDVNGMMTADPRTVKGAVPVPCVSYEEAAELAYFGANILHPV 156
            +QVWKDV+GMMTADPR V GAVPVPCVSYEEAAELAYFGANILHPV
Sbjct:  322 VQVWKDVDGMMTADPRAVPGAVPVPCVSYEEAAELAYFGANILHPV 367
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BLAST of mRNA_H-elongata_contig152562.3469.1 vs. uniprot
Match: A0A6H5JA47_9PHAE (Aspartokinase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA47_9PHAE)

HSP 1 Score: 92.0 bits (227), Expect = 1.760e-20
Identity = 42/46 (91.30%), Postives = 44/46 (95.65%), Query Frame = 1 
Query:   19 LQVWKDVNGMMTADPRTVKGAVPVPCVSYEEAAELAYFGANILHPV 156
            +QVWKDV+GMMTADPR V GAVPVPCVSYEEAAELAYFGANILHPV
Sbjct:  345 VQVWKDVDGMMTADPRAVPGAVPVPCVSYEEAAELAYFGANILHPV 390
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BLAST of mRNA_H-elongata_contig152562.3469.1 vs. uniprot
Match: A0A835ZI76_9STRA (Aspartokinase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZI76_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 2.010e-19
Identity = 41/46 (89.13%), Postives = 43/46 (93.48%), Query Frame = 1 
Query:   19 LQVWKDVNGMMTADPRTVKGAVPVPCVSYEEAAELAYFGANILHPV 156
            +QVWKDV+GMMTADPR VK AVPVPCVSYEEAAELAYFGA ILHPV
Sbjct:  237 VQVWKDVDGMMTADPRAVKRAVPVPCVSYEEAAELAYFGAKILHPV 282
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BLAST of mRNA_H-elongata_contig152562.3469.1 vs. uniprot
Match: F0Y430_AURAN (Aspartokinase n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y430_AURAN)

HSP 1 Score: 79.3 bits (194), Expect = 5.330e-16
Identity = 34/49 (69.39%), Postives = 42/49 (85.71%), Query Frame = 1 
Query:   10 FCTLQVWKDVNGMMTADPRTVKGAVPVPCVSYEEAAELAYFGANILHPV 156
            +  +QVWKDV+GMM+ADPR +  AVPVP V+YEEAAELAYFGA +LHP+
Sbjct:  272 YAEVQVWKDVDGMMSADPRVIPEAVPVPYVTYEEAAELAYFGAQVLHPI 320
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BLAST of mRNA_H-elongata_contig152562.3469.1 vs. uniprot
Match: A0A4D9D6A5_9STRA (Aspartokinase n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D6A5_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 1.290e-15
Identity = 34/46 (73.91%), Postives = 41/46 (89.13%), Query Frame = 1 
Query:   19 LQVWKDVNGMMTADPRTVKGAVPVPCVSYEEAAELAYFGANILHPV 156
            +QVWKDVNG+MTA+P+ V  AVPVP VS+EEA+ELAYFGA ILHP+
Sbjct:  214 IQVWKDVNGIMTANPKVVSNAVPVPFVSFEEASELAYFGAEILHPI 259
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BLAST of mRNA_H-elongata_contig152562.3469.1 vs. uniprot
Match: W7U6D4_9STRA (Aspartate kinase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U6D4_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 1.370e-15
Identity = 34/46 (73.91%), Postives = 41/46 (89.13%), Query Frame = 1 
Query:   19 LQVWKDVNGMMTADPRTVKGAVPVPCVSYEEAAELAYFGANILHPV 156
            +QVWKDVNG+MTA+P+ V  AVPVP VS+EEA+ELAYFGA ILHP+
Sbjct:  335 IQVWKDVNGIMTANPKVVSNAVPVPFVSFEEASELAYFGAEILHPI 380
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BLAST of mRNA_H-elongata_contig152562.3469.1 vs. uniprot
Match: A0A7S4QZF3_9STRA (Aspartate kinase n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4QZF3_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 1.370e-15
Identity = 34/50 (68.00%), Postives = 42/50 (84.00%), Query Frame = 1 
Query:    7 RFCTLQVWKDVNGMMTADPRTVKGAVPVPCVSYEEAAELAYFGANILHPV 156
            R   +QVWKDV+G++TADPR V  A+PVP VSYEEA+ELAYFGA +LHP+
Sbjct:  358 RLDEIQVWKDVDGILTADPRLVANAIPVPDVSYEEASELAYFGAKVLHPI 407
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BLAST of mRNA_H-elongata_contig152562.3469.1 vs. uniprot
Match: A0A172E6T9_PHATR (Aspartate kinase (Fragment) n=1 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A172E6T9_PHATR)

HSP 1 Score: 73.6 bits (179), Expect = 7.010e-15
Identity = 32/46 (69.57%), Postives = 40/46 (86.96%), Query Frame = 1 
Query:   19 LQVWKDVNGMMTADPRTVKGAVPVPCVSYEEAAELAYFGANILHPV 156
            +QVWKDV+G++T+DPR V  AVPV  VSYEEA+ELAYFGA +LHP+
Sbjct:   83 IQVWKDVDGILTSDPRLVPNAVPVGDVSYEEASELAYFGAQVLHPI 128
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BLAST of mRNA_H-elongata_contig152562.3469.1 vs. uniprot
Match: A0A7S0EUU4_9EUKA (Hypothetical protein n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0EUU4_9EUKA)

HSP 1 Score: 75.1 bits (183), Expect = 7.570e-15
Identity = 33/51 (64.71%), Postives = 42/51 (82.35%), Query Frame = 1 
Query:    4 SRFCTLQVWKDVNGMMTADPRTVKGAVPVPCVSYEEAAELAYFGANILHPV 156
            + F  +QVWKDV+G+++ADPR    A+PVP VSY+EAAELAYFGA +LHPV
Sbjct:   11 AEFDEVQVWKDVDGILSADPRVCANALPVPRVSYDEAAELAYFGAQVLHPV 61
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BLAST of mRNA_H-elongata_contig152562.3469.1 vs. uniprot
Match: A0A0Q4BFI1_9ARCH (Aspartokinase n=1 Tax=Methanomassiliicoccales archaeon RumEn M1 TaxID=1713724 RepID=A0A0Q4BFI1_9ARCH)

HSP 1 Score: 75.9 bits (185), Expect = 8.580e-15
Identity = 30/46 (65.22%), Postives = 41/46 (89.13%), Query Frame = 1 
Query:   16 TLQVWKDVNGMMTADPRTVKGAVPVPCVSYEEAAELAYFGANILHP 153
            +L++WKDV+G M+ADP+ V GAVP+P ++YEEAAEL+YFGA +LHP
Sbjct:  222 SLEIWKDVDGFMSADPKVVPGAVPIPALTYEEAAELSYFGAKVLHP 267
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig152562.3469.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FXQ9_ECTSI1.500e-2091.30Aspartokinase n=1 Tax=Ectocarpus siliculosus TaxID... [more]
A0A6H5JA47_9PHAE1.760e-2091.30Aspartokinase n=1 Tax=Ectocarpus sp. CCAP 1310/34 ... [more]
A0A835ZI76_9STRA2.010e-1989.13Aspartokinase n=1 Tax=Tribonema minus TaxID=303371... [more]
F0Y430_AURAN5.330e-1669.39Aspartokinase n=1 Tax=Aureococcus anophagefferens ... [more]
A0A4D9D6A5_9STRA1.290e-1573.91Aspartokinase n=1 Tax=Nannochloropsis salina CCMP1... [more]
W7U6D4_9STRA1.370e-1573.91Aspartate kinase n=1 Tax=Nannochloropsis gaditana ... [more]
A0A7S4QZF3_9STRA1.370e-1568.00Aspartate kinase n=1 Tax=Ditylum brightwellii TaxI... [more]
A0A172E6T9_PHATR7.010e-1569.57Aspartate kinase (Fragment) n=1 Tax=Phaeodactylum ... [more]
A0A7S0EUU4_9EUKA7.570e-1564.71Hypothetical protein n=1 Tax=Phaeocystis antarctic... [more]
A0A0Q4BFI1_9ARCH8.580e-1565.22Aspartokinase n=1 Tax=Methanomassiliicoccales arch... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig152562contigH-elongata_contig152562:1276..1431 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score92.8
Seed ortholog evalue5e-17
Seed eggNOG ortholog2880.D7FXQ9
Preferred nameHOM3
KEGG rclassRC00002,RC00043
KEGG koko:K00928
KEGG ReactionR00480
KEGG Pathwayko00260,ko00261,ko00270,ko00300,ko01100,ko01110,ko01120,ko01130,ko01210,ko01230,map00260,map00261,map00270,map00300,map01100,map01110,map01120,map01130,map01210,map01230
KEGG ModuleM00016,M00017,M00018,M00033,M00525,M00526,M00527
GOsGO:0000096,GO:0000097,GO:0003674,GO:0003824,GO:0004072,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006531,GO:0006553,GO:0006555,GO:0006566,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009066,GO:0009067,GO:0009069,GO:0009070,GO:0009085,GO:0009086,GO:0009088,GO:0009089,GO:0009090,GO:0009092,GO:0009987,GO:0016053,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016774,GO:0019202,GO:0019752,GO:0043436,GO:0043648,GO:0044237,GO:0044238,GO:0044249,GO:0044272,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0046451,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607
EggNOG free text desc.aspartate kinase activity
EggNOG OGsCOG0527@1,KOG0456@2759
EC2.7.2.4
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size156
Cds size156
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929901.5490289-CDS-H-elongata_contig152562:1275..14311622929901.5490289-CDS-H-elongata_contig152562:1275..1431Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig152562 1276..1431 +
1691679201.190251-CDS-H-elongata_contig152562:1275..14311691679201.190251-CDS-H-elongata_contig152562:1275..1431Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig152562 1276..1431 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig152562.3469.1prot_H-elongata_contig152562.3469.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig152562 1276..1431 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig152562.3469.1

>prot_H-elongata_contig152562.3469.1 ID=prot_H-elongata_contig152562.3469.1|Name=mRNA_H-elongata_contig152562.3469.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=52bp
MSRFCTLQVWKDVNGMMTADPRTVKGAVPVPCVSYEEAAELAYFGANILH
PV
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mRNA from alignment at H-elongata_contig152562:1276..1431+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig152562.3469.1 ID=mRNA_H-elongata_contig152562.3469.1|Name=mRNA_H-elongata_contig152562.3469.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=156bp|location=Sequence derived from alignment at H-elongata_contig152562:1276..1431+ (Himanthalia elongata Himel1 dioecious)
ATGTCGCGATTTTGTACCCTACAGGTGTGGAAGGACGTGAACGGCATGAT
GACTGCGGATCCCCGTACGGTGAAAGGAGCTGTACCGGTGCCGTGTGTCT
CGTACGAGGAGGCCGCGGAGCTGGCATACTTTGGGGCGAACATTCTACAC
CCTGTG
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Coding sequence (CDS) from alignment at H-elongata_contig152562:1276..1431+

>mRNA_H-elongata_contig152562.3469.1 ID=mRNA_H-elongata_contig152562.3469.1|Name=mRNA_H-elongata_contig152562.3469.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=312bp|location=Sequence derived from alignment at H-elongata_contig152562:1276..1431+ (Himanthalia elongata Himel1 dioecious)
ATGTCGCGATTTTGTACCCTACAGGTGTGGAAGGACGTGAACGGCATGAT
GACTGCGGATCCCCGTACGGTGAAAGGAGCTGTACCGGTGCCGTGTGTCT
CGTACGAGGAGGCCGCGGAGCTGGCATACTTTGGGGCGAACATTCTACAC
CCTGTGATGTCGCGATTTTGTACCCTACAGGTGTGGAAGGACGTGAACGG
CATGATGACTGCGGATCCCCGTACGGTGAAAGGAGCTGTACCGGTGCCGT
GTGTCTCGTACGAGGAGGCCGCGGAGCTGGCATACTTTGGGGCGAACATT
CTACACCCTGTG
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