mRNA_H-elongata_contig152416.3459.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig152416.3459.1
Unique NamemRNA_H-elongata_contig152416.3459.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig152416.3459.1 vs. uniprot
Match: A0A6H5K4T0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4T0_9PHAE)

HSP 1 Score: 56.2 bits (134), Expect = 5.450e-8
Identity = 28/43 (65.12%), Postives = 35/43 (81.40%), Query Frame = 1 
Query:    7 MAASAKSGWLSREQLAVNEFARRVSLKRGAGLPAAAMAQWRRK 135
            ++A ++SGWLSREQ+A NEFARRV +KRG GL   A A+WRRK
Sbjct:  527 LSAWSESGWLSREQVAANEFARRVGVKRGVGLSMPASAEWRRK 569
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig152416.3459.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K4T0_9PHAE5.450e-865.12Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig152416contigH-elongata_contig152416:422..556 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-19_002810.1
Exons1
Model size135
Cds size129
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929900.7281995-CDS-H-elongata_contig152416:421..5501622929900.7281995-CDS-H-elongata_contig152416:421..550Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig152416 422..550 -
1691679200.80669-CDS-H-elongata_contig152416:421..5501691679200.80669-CDS-H-elongata_contig152416:421..550Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig152416 422..550 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929900.739111-UTR-H-elongata_contig152416:550..5561622929900.739111-UTR-H-elongata_contig152416:550..556Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig152416 551..556 -
1691679200.816547-UTR-H-elongata_contig152416:550..5561691679200.816547-UTR-H-elongata_contig152416:550..556Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig152416 551..556 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig152416.3459.1prot_H-elongata_contig152416.3459.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig152416 422..550 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig152416.3459.1

>prot_H-elongata_contig152416.3459.1 ID=prot_H-elongata_contig152416.3459.1|Name=mRNA_H-elongata_contig152416.3459.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=43bp
MAASAKSGWLSREQLAVNEFARRVSLKRGAGLPAAAMAQWRRK
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mRNA from alignment at H-elongata_contig152416:422..556-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig152416.3459.1 ID=mRNA_H-elongata_contig152416.3459.1|Name=mRNA_H-elongata_contig152416.3459.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=135bp|location=Sequence derived from alignment at H-elongata_contig152416:422..556- (Himanthalia elongata Himel1 dioecious)
GACGTGATGGCAGCGTCCGCCAAGAGTGGGTGGCTTTCGAGGGAGCAGCT
CGCGGTGAATGAGTTCGCGAGGCGGGTGAGTCTCAAGCGCGGGGCGGGGT
TGCCGGCTGCGGCGATGGCGCAGTGGAGGCGAAAG
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Coding sequence (CDS) from alignment at H-elongata_contig152416:422..556-

>mRNA_H-elongata_contig152416.3459.1 ID=mRNA_H-elongata_contig152416.3459.1|Name=mRNA_H-elongata_contig152416.3459.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=258bp|location=Sequence derived from alignment at H-elongata_contig152416:422..556- (Himanthalia elongata Himel1 dioecious)
ATGGCAGCGTCCGCCAAGAGTGGGTGGCTTTCGAGGGAGCAGCTCGCGGT
GAATGAGTTCGCGAGGCGGGTGAGTCTCAAGCGCGGGGCGGGGTTGCCGG
CTGCGGCGATGGCGCAGTGGAGGCGAAAGATGGCAGCGTCCGCCAAGAGT
GGGTGGCTTTCGAGGGAGCAGCTCGCGGTGAATGAGTTCGCGAGGCGGGT
GAGTCTCAAGCGCGGGGCGGGGTTGCCGGCTGCGGCGATGGCGCAGTGGA
GGCGAAAG
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