mRNA_H-elongata_contig152332.3458.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig152332.3458.1
Unique NamemRNA_H-elongata_contig152332.3458.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig152332.3458.1 vs. uniprot
Match: D7FYA4_ECTSI (tRNA(Phe) (4-demethylwyosine(37)-C(7)) aminocarboxypropyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYA4_ECTSI)

HSP 1 Score: 95.5 bits (236), Expect = 6.780e-22
Identity = 42/57 (73.68%), Postives = 47/57 (82.46%), Query Frame = 1 
Query:    1 QVFHHAILNLPDSALSFLDAFRGVDWMASGFETPPTVHVYCFSRAADPKQASLSSLN 171
            QVFHHAILNLPDSAL+FLD FRGV W   GF++PP VHVYCFS+AADPKQ +L   N
Sbjct:  255 QVFHHAILNLPDSALTFLDTFRGVHWREHGFDSPPMVHVYCFSKAADPKQDALDRAN 311
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BLAST of mRNA_H-elongata_contig152332.3458.1 vs. uniprot
Match: A0A835Z8A4_9STRA (tRNA (guanine(37)-N1)-methyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8A4_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 3.040e-12
Identity = 29/45 (64.44%), Postives = 32/45 (71.11%), Query Frame = 1 
Query:    7 FHHAILNLPDSALSFLDAFRGVDWMASGFETPPTVHVYCFSRAAD 141
            F H I+NLP SA+ FLDAFR +DW A GF  PP VH YCFSR  D
Sbjct:  325 FGHVIMNLPASAIDFLDAFRDIDWAARGFRDPPLVHCYCFSRGDD 369
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BLAST of mRNA_H-elongata_contig152332.3458.1 vs. uniprot
Match: A0A2P2IN41_RHIMU (tRNA (guanine(37)-N1)-methyltransferase n=2 Tax=Rhizophora mucronata TaxID=61149 RepID=A0A2P2IN41_RHIMU)

HSP 1 Score: 55.5 bits (132), Expect = 1.720e-7
Identity = 27/50 (54.00%), Postives = 32/50 (64.00%), Query Frame = 1 
Query:   13 HAILNLPDSALSFLDAFRGVDWMASGFETPPTVHVYCFSRAADPKQASLS 162
            H I+NLP SAL FLDAFRG+    S    PP VH YCF RA + K+  +S
Sbjct:  397 HMIMNLPASALQFLDAFRGLICRKSWKGFPPLVHCYCFVRATETKEMIIS 446
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BLAST of mRNA_H-elongata_contig152332.3458.1 vs. uniprot
Match: A0A2P6RJN5_ROSCH (tRNA (guanine(37)-N1)-methyltransferase n=4 Tax=Rosoideae TaxID=171638 RepID=A0A2P6RJN5_ROSCH)

HSP 1 Score: 54.3 bits (129), Expect = 4.400e-7
Identity = 26/50 (52.00%), Postives = 33/50 (66.00%), Query Frame = 1 
Query:   13 HAILNLPDSALSFLDAFRGVDWMASGFETPPTVHVYCFSRAADPKQASLS 162
            H I+NLP SAL FLDAFRGV       ET P +H YCF RA++ ++  +S
Sbjct:  410 HVIMNLPASALEFLDAFRGVIQRKYWRETLPLIHCYCFIRASETQEYIIS 459
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BLAST of mRNA_H-elongata_contig152332.3458.1 vs. uniprot
Match: A0A4Q2DWI9_9AGAR (tRNA(Phe) (4-demethylwyosine(37)-C(7)) aminocarboxypropyltransferase n=1 Tax=Candolleomyces aberdarensis TaxID=2316362 RepID=A0A4Q2DWI9_9AGAR)

HSP 1 Score: 54.3 bits (129), Expect = 4.440e-7
Identity = 24/52 (46.15%), Postives = 34/52 (65.38%), Query Frame = 1 
Query:   13 HAILNLPDSALSFLDAFRGV-----DWMASGFETPPTVHVYCFSRAADPKQA 153
            H ++NLPDSA+ FLDAFRG+       M   +E  P +H +CF+R A+P +A
Sbjct:  170 HFVMNLPDSAIQFLDAFRGILSDADPNMREAYEALPMIHCHCFTREAEPDKA 221
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BLAST of mRNA_H-elongata_contig152332.3458.1 vs. uniprot
Match: A0A165CW57_EXIGL (tRNA (guanine(37)-N1)-methyltransferase n=1 Tax=Exidia glandulosa HHB12029 TaxID=1314781 RepID=A0A165CW57_EXIGL)

HSP 1 Score: 53.9 bits (128), Expect = 6.000e-7
Identity = 26/55 (47.27%), Postives = 35/55 (63.64%), Query Frame = 1 
Query:   13 HAILNLPDSALSFLDAFRGVDWMASG--------FETPPTVHVYCFSRAADPKQA 153
            H ++NLPDSAL+FLDAFRG   +           + + PTVHV+CF+R  DP+ A
Sbjct:  347 HIVMNLPDSALTFLDAFRGALSIPDADPAAVREVYTSMPTVHVHCFTRELDPEAA 401
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BLAST of mRNA_H-elongata_contig152332.3458.1 vs. uniprot
Match: A0A0W4ZRB0_PNEJ7 (tRNA (guanine(37)-N1)-methyltransferase n=1 Tax=Pneumocystis jirovecii (strain RU7) TaxID=1408657 RepID=A0A0W4ZRB0_PNEJ7)

HSP 1 Score: 53.5 bits (127), Expect = 8.200e-7
Identity = 25/56 (44.64%), Postives = 38/56 (67.86%), Query Frame = 1 
Query:    1 QVFHHAILNLPDSALSFLDAFRGVDWMASGFE--------TPPTVHVYCFSRAADP 144
            QVF H I+NLP++++ FLDAF+G+    SG++        + PT+HVYCFS+ + P
Sbjct:  333 QVFKHFIMNLPETSIDFLDAFKGI---YSGYKHLFLSTKNSLPTIHVYCFSKLSPP 385
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BLAST of mRNA_H-elongata_contig152332.3458.1 vs. uniprot
Match: A0A369K467_HYPMA (tRNA (guanine(37)-N1)-methyltransferase n=1 Tax=Hypsizygus marmoreus TaxID=39966 RepID=A0A369K467_HYPMA)

HSP 1 Score: 53.5 bits (127), Expect = 8.220e-7
Identity = 23/50 (46.00%), Postives = 35/50 (70.00%), Query Frame = 1 
Query:   13 HAILNLPDSALSFLDAFRGV---DWMASGFETPPTVHVYCFSRAADPKQA 153
            H ++NLPDSA++FLDAFRGV   D +   ++  P +H +CF+R  +P +A
Sbjct:  380 HFVMNLPDSAITFLDAFRGVLASDDLKEVYDVMPMIHCHCFTRELEPDRA 429
[Close]
BLAST of mRNA_H-elongata_contig152332.3458.1 vs. uniprot
Match: L0P7Q3_PNEJ8 (tRNA (guanine(37)-N1)-methyltransferase n=1 Tax=Pneumocystis jirovecii (strain SE8) TaxID=1209962 RepID=L0P7Q3_PNEJ8)

HSP 1 Score: 53.5 bits (127), Expect = 8.250e-7
Identity = 25/56 (44.64%), Postives = 38/56 (67.86%), Query Frame = 1 
Query:    1 QVFHHAILNLPDSALSFLDAFRGVDWMASGFE--------TPPTVHVYCFSRAADP 144
            QVF H I+NLP++++ FLDAF+G+    SG++        + PT+HVYCFS+ + P
Sbjct:  470 QVFKHFIMNLPETSIDFLDAFKGI---YSGYKHLFLSTKNSLPTIHVYCFSKLSPP 522
[Close]
BLAST of mRNA_H-elongata_contig152332.3458.1 vs. uniprot
Match: UPI001B86B4FA (Met-10+ like-protein-domain-containing protein n=4 Tax=Suillus TaxID=5379 RepID=UPI001B86B4FA)

HSP 1 Score: 53.1 bits (126), Expect = 1.120e-6
Identity = 22/51 (43.14%), Postives = 32/51 (62.75%), Query Frame = 1 
Query:   13 HAILNLPDSALSFLDAFRGV----DWMASGFETPPTVHVYCFSRAADPKQA 153
            H ++NLPDSA+ FLDAFRG+    +W    +   P +H +CF+R   P +A
Sbjct:  380 HFVMNLPDSAIDFLDAFRGILSESEWDFGNYANMPMIHCHCFTRELHPDRA 430
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig152332.3458.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FYA4_ECTSI6.780e-2273.68tRNA(Phe) (4-demethylwyosine(37)-C(7)) aminocarbox... [more]
A0A835Z8A4_9STRA3.040e-1264.44tRNA (guanine(37)-N1)-methyltransferase n=1 Tax=Tr... [more]
A0A2P2IN41_RHIMU1.720e-754.00tRNA (guanine(37)-N1)-methyltransferase n=2 Tax=Rh... [more]
A0A2P6RJN5_ROSCH4.400e-752.00tRNA (guanine(37)-N1)-methyltransferase n=4 Tax=Ro... [more]
A0A4Q2DWI9_9AGAR4.440e-746.15tRNA(Phe) (4-demethylwyosine(37)-C(7)) aminocarbox... [more]
A0A165CW57_EXIGL6.000e-747.27tRNA (guanine(37)-N1)-methyltransferase n=1 Tax=Ex... [more]
A0A0W4ZRB0_PNEJ78.200e-744.64tRNA (guanine(37)-N1)-methyltransferase n=1 Tax=Pn... [more]
A0A369K467_HYPMA8.220e-746.00tRNA (guanine(37)-N1)-methyltransferase n=1 Tax=Hy... [more]
L0P7Q3_PNEJ88.250e-744.64tRNA (guanine(37)-N1)-methyltransferase n=1 Tax=Pn... [more]
UPI001B86B4FA1.120e-643.14Met-10+ like-protein-domain-containing protein n=4... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig152332contigH-elongata_contig152332:1037..1207 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score95.5
Seed ortholog evalue8.5e-18
Seed eggNOG ortholog2880.D7FYA4
Preferred nameTRM5
KEGG rclassRC00003,RC00334
KEGG koko:K15429
KEGG ReactionR00597
GOsGO:0000959,GO:0000963,GO:0001510,GO:0002939,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0005759,GO:0005829,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008168,GO:0008173,GO:0008175,GO:0008757,GO:0009019,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016423,GO:0016740,GO:0016741,GO:0030431,GO:0030488,GO:0031974,GO:0032259,GO:0032501,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0052906,GO:0070013,GO:0070525,GO:0070900,GO:0070901,GO:0071704,GO:0090304,GO:0090646,GO:0140053,GO:0140098,GO:0140101,GO:1900864,GO:1901360
EggNOG free text desc.tRNA (guanine(37)-N(1))-methyltransferase activity
EggNOG OGsCOG2520@1,KOG2078@2759
EC2.1.1.228
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03016
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionS-adenosyl-L-methionine-dependent methyltransferase
Ec32 orthologEc-24_003210.1
Exons1
Model size171
Cds size171
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929900.683459-CDS-H-elongata_contig152332:1036..12071622929900.683459-CDS-H-elongata_contig152332:1036..1207Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig152332 1037..1207 -
1691679200.7892137-CDS-H-elongata_contig152332:1036..12071691679200.7892137-CDS-H-elongata_contig152332:1036..1207Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig152332 1037..1207 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig152332.3458.1prot_H-elongata_contig152332.3458.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig152332 1037..1207 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig152332.3458.1

>prot_H-elongata_contig152332.3458.1 ID=prot_H-elongata_contig152332.3458.1|Name=mRNA_H-elongata_contig152332.3458.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=57bp
QVFHHAILNLPDSALSFLDAFRGVDWMASGFETPPTVHVYCFSRAADPKQ
ASLSSLN
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mRNA from alignment at H-elongata_contig152332:1037..1207-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig152332.3458.1 ID=mRNA_H-elongata_contig152332.3458.1|Name=mRNA_H-elongata_contig152332.3458.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=171bp|location=Sequence derived from alignment at H-elongata_contig152332:1037..1207- (Himanthalia elongata Himel1 dioecious)
CAGGTTTTCCACCACGCCATCTTGAACCTTCCGGACTCGGCGCTCTCCTT
CCTAGACGCTTTCCGAGGGGTGGACTGGATGGCGAGCGGCTTTGAGACGC
CGCCCACCGTGCACGTCTACTGCTTCAGCAGAGCCGCTGATCCCAAGCAG
GCAAGCCTTTCATCACTCAAC
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Coding sequence (CDS) from alignment at H-elongata_contig152332:1037..1207-

>mRNA_H-elongata_contig152332.3458.1 ID=mRNA_H-elongata_contig152332.3458.1|Name=mRNA_H-elongata_contig152332.3458.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=342bp|location=Sequence derived from alignment at H-elongata_contig152332:1037..1207- (Himanthalia elongata Himel1 dioecious)
CAGGTTTTCCACCACGCCATCTTGAACCTTCCGGACTCGGCGCTCTCCTT
CCTAGACGCTTTCCGAGGGGTGGACTGGATGGCGAGCGGCTTTGAGACGC
CGCCCACCGTGCACGTCTACTGCTTCAGCAGAGCCGCTGATCCCAAGCAG
GCAAGCCTTTCATCACTCAACCAGGTTTTCCACCACGCCATCTTGAACCT
TCCGGACTCGGCGCTCTCCTTCCTAGACGCTTTCCGAGGGGTGGACTGGA
TGGCGAGCGGCTTTGAGACGCCGCCCACCGTGCACGTCTACTGCTTCAGC
AGAGCCGCTGATCCCAAGCAGGCAAGCCTTTCATCACTCAAC
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