mRNA_H-elongata_contig152312.3457.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig152312.3457.1
Unique NamemRNA_H-elongata_contig152312.3457.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig152312.3457.1 vs. uniprot
Match: D8LJZ0_ECTSI (Peptide-methionine (S)-S-oxide reductase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJZ0_ECTSI)

HSP 1 Score: 179 bits (454), Expect = 1.010e-55
Identity = 78/89 (87.64%), Postives = 87/89 (97.75%), Query Frame = 1
Query:    1 SGCFWGVELAYQRIPGVLETEVGYTDGHKENPTYKEVCAGTTGHTEALRVKFDPRIVKYNELLTVLWDRIDPTTLNRQGNDRGTQYRSG 267
            +GCFW VELAYQR+PGVLETEVGYTDGHK++PTY+EVC+G+TGHTEALRVKFDPR+VKYNELLTVLWD+IDPTTLNRQGND GTQYRSG
Sbjct:   37 AGCFWSVELAYQRVPGVLETEVGYTDGHKKDPTYQEVCSGSTGHTEALRVKFDPRVVKYNELLTVLWDKIDPTTLNRQGNDSGTQYRSG 125          
BLAST of mRNA_H-elongata_contig152312.3457.1 vs. uniprot
Match: A0A7S2V8A8_9STRA (Peptide-methionine (S)-S-oxide reductase n=2 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V8A8_9STRA)

HSP 1 Score: 157 bits (396), Expect = 5.630e-47
Identity = 66/89 (74.16%), Postives = 80/89 (89.89%), Query Frame = 1
Query:    1 SGCFWGVELAYQRIPGVLETEVGYTDGHKENPTYKEVCAGTTGHTEALRVKFDPRIVKYNELLTVLWDRIDPTTLNRQGNDRGTQYRSG 267
            +GCFWGVEL++QR+PGV+ T+VGYT G K+NPTY+EVC GTTGH EA+++ FDP IV Y+ELLTVLWDR+DPT +NRQGNDRGTQYRSG
Sbjct:   32 AGCFWGVELSFQRVPGVISTQVGYTAGEKDNPTYEEVCRGTTGHAEAVQLTFDPSIVSYDELLTVLWDRMDPTQVNRQGNDRGTQYRSG 120          
BLAST of mRNA_H-elongata_contig152312.3457.1 vs. uniprot
Match: A0A835YZF7_9STRA (Peptide-methionine (S)-S-oxide reductase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZF7_9STRA)

HSP 1 Score: 155 bits (393), Expect = 1.920e-46
Identity = 64/89 (71.91%), Postives = 82/89 (92.13%), Query Frame = 1
Query:    1 SGCFWGVELAYQRIPGVLETEVGYTDGHKENPTYKEVCAGTTGHTEALRVKFDPRIVKYNELLTVLWDRIDPTTLNRQGNDRGTQYRSG 267
            +GCFW +++++ R+PG+ ET VGYTDGHK NPTY+EVC+G+TGHTEAL++K+DPRIV Y+ELLTVL+DR+DPTTLNRQG+D GTQYRSG
Sbjct:   38 AGCFWSIQISFDRVPGITETVVGYTDGHKANPTYEEVCSGSTGHTEALQIKYDPRIVSYHELLTVLYDRMDPTTLNRQGHDIGTQYRSG 126          
BLAST of mRNA_H-elongata_contig152312.3457.1 vs. uniprot
Match: A0A7S3HR50_9STRA (Peptide-methionine (S)-S-oxide reductase n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HR50_9STRA)

HSP 1 Score: 152 bits (385), Expect = 4.620e-45
Identity = 64/88 (72.73%), Postives = 78/88 (88.64%), Query Frame = 1
Query:    4 GCFWGVELAYQRIPGVLETEVGYTDGHKENPTYKEVCAGTTGHTEALRVKFDPRIVKYNELLTVLWDRIDPTTLNRQGNDRGTQYRSG 267
            GCFWG+ELA+QR+PGV++TEVGYT G K+NPTY+EVC+GTTGHTEA+++ +DP  V Y++LLTV WD IDPTTLNRQG D GTQYRSG
Sbjct:   52 GCFWGIELAFQRVPGVVKTEVGYTQGIKKNPTYEEVCSGTTGHTEAVQITYDPAAVSYDDLLTVFWDLIDPTTLNRQGGDAGTQYRSG 139          
BLAST of mRNA_H-elongata_contig152312.3457.1 vs. uniprot
Match: A0A834WC93_9FABA (Peptide-methionine (S)-S-oxide reductase n=1 Tax=Senna tora TaxID=362788 RepID=A0A834WC93_9FABA)

HSP 1 Score: 143 bits (360), Expect = 2.530e-41
Identity = 59/89 (66.29%), Postives = 74/89 (83.15%), Query Frame = 1
Query:    1 SGCFWGVELAYQRIPGVLETEVGYTDGHKENPTYKEVCAGTTGHTEALRVKFDPRIVKYNELLTVLWDRIDPTTLNRQGNDRGTQYRSG 267
            +GCFWGVELA+QR+PGV +TEVGYT G+  NPTY++VC GTT H+E +R+++DP+   Y+ LL V W+R DPTTLNRQGND GTQYRSG
Sbjct:   42 AGCFWGVELAFQRVPGVTKTEVGYTQGYLHNPTYEDVCTGTTNHSEVVRIQYDPKACSYDSLLDVFWERHDPTTLNRQGNDVGTQYRSG 130          
BLAST of mRNA_H-elongata_contig152312.3457.1 vs. uniprot
Match: A0A6P4CPG1_ARADU (Peptide-methionine (S)-S-oxide reductase n=3 Tax=Arachis TaxID=3817 RepID=A0A6P4CPG1_ARADU)

HSP 1 Score: 141 bits (356), Expect = 7.240e-41
Identity = 59/89 (66.29%), Postives = 72/89 (80.90%), Query Frame = 1
Query:    1 SGCFWGVELAYQRIPGVLETEVGYTDGHKENPTYKEVCAGTTGHTEALRVKFDPRIVKYNELLTVLWDRIDPTTLNRQGNDRGTQYRSG 267
            +GCFWGVELA+QR+ GV++TEVGYT GH  +PTYK+VC GTT H E +RV+FDP++  YN LL + W R DPT+LNRQGND G QYRSG
Sbjct:   30 AGCFWGVELAFQRVVGVIKTEVGYTQGHSHDPTYKQVCTGTTNHVEVVRVQFDPKLCTYNTLLDLFWSRHDPTSLNRQGNDVGAQYRSG 118          
BLAST of mRNA_H-elongata_contig152312.3457.1 vs. uniprot
Match: A0A1U8B3V2_NELNU (Peptide-methionine (S)-S-oxide reductase n=1 Tax=Nelumbo nucifera TaxID=4432 RepID=A0A1U8B3V2_NELNU)

HSP 1 Score: 142 bits (358), Expect = 2.480e-40
Identity = 61/89 (68.54%), Postives = 71/89 (79.78%), Query Frame = 1
Query:    1 SGCFWGVELAYQRIPGVLETEVGYTDGHKENPTYKEVCAGTTGHTEALRVKFDPRIVKYNELLTVLWDRIDPTTLNRQGNDRGTQYRSG 267
            +GCFWGVELAYQR+PGV +TEVGY+ GH  NPTY +VC+GTT H E +RV++DP+   Y  LL V W R DPTTLNRQGND GTQYRSG
Sbjct:  100 AGCFWGVELAYQRVPGVTKTEVGYSQGHPHNPTYNDVCSGTTQHAEVVRVQYDPKECSYENLLDVFWARHDPTTLNRQGNDVGTQYRSG 188          
BLAST of mRNA_H-elongata_contig152312.3457.1 vs. uniprot
Match: A0A7S3UAA2_9CHLO (Peptidylprolyl isomerase n=1 Tax=Picocystis salinarum TaxID=88271 RepID=A0A7S3UAA2_9CHLO)

HSP 1 Score: 144 bits (362), Expect = 3.380e-40
Identity = 60/88 (68.18%), Postives = 75/88 (85.23%), Query Frame = 1
Query:    4 GCFWGVELAYQRIPGVLETEVGYTDGHKENPTYKEVCAGTTGHTEALRVKFDPRIVKYNELLTVLWDRIDPTTLNRQGNDRGTQYRSG 267
            GCFWG+ELAYQR+PGVL T VGY +G KE+PTY+EVC+G TGH EA++V ++P+ V Y +LL + WDR+DPTTLNRQGND GTQYR+G
Sbjct:  176 GCFWGLELAYQRLPGVLSTSVGYANGTKEDPTYQEVCSGETGHAEAVQVTYNPKAVGYEQLLKLFWDRVDPTTLNRQGNDVGTQYRTG 263          
BLAST of mRNA_H-elongata_contig152312.3457.1 vs. uniprot
Match: A0A498I1R5_MALDO (Peptide-methionine (S)-S-oxide reductase n=7 Tax=Maleae TaxID=721813 RepID=A0A498I1R5_MALDO)

HSP 1 Score: 140 bits (352), Expect = 3.380e-40
Identity = 58/89 (65.17%), Postives = 72/89 (80.90%), Query Frame = 1
Query:    1 SGCFWGVELAYQRIPGVLETEVGYTDGHKENPTYKEVCAGTTGHTEALRVKFDPRIVKYNELLTVLWDRIDPTTLNRQGNDRGTQYRSG 267
            SGCFWG EL +QR+ GV++TEVGY+ GH +NP YK +C+GTT H+E +RV+FDP +  Y +LL+V WDR DPTTLNRQG D GTQYRSG
Sbjct:   34 SGCFWGAELRFQRVVGVVKTEVGYSQGHVDNPNYKLICSGTTNHSEVVRVQFDPEVCSYTDLLSVFWDRHDPTTLNRQGGDVGTQYRSG 122          
BLAST of mRNA_H-elongata_contig152312.3457.1 vs. uniprot
Match: UPI001C4F03A8 (peptide methionine sulfoxide reductase A1-like n=2 Tax=Proteaceae TaxID=4328 RepID=UPI001C4F03A8)

HSP 1 Score: 142 bits (357), Expect = 3.980e-40
Identity = 60/89 (67.42%), Postives = 72/89 (80.90%), Query Frame = 1
Query:    1 SGCFWGVELAYQRIPGVLETEVGYTDGHKENPTYKEVCAGTTGHTEALRVKFDPRIVKYNELLTVLWDRIDPTTLNRQGNDRGTQYRSG 267
            +GCFWGVELA+QR+PGV +TEVGY+ GH  NPTY ++C GTT H+E +RV++DP+   Y  LL V WDR DPTTLNRQGND GTQYRSG
Sbjct:  105 AGCFWGVELAFQRVPGVTKTEVGYSQGHLHNPTYNDICTGTTKHSEIVRVQYDPKECGYESLLDVFWDRHDPTTLNRQGNDVGTQYRSG 193          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig152312.3457.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LJZ0_ECTSI1.010e-5587.64Peptide-methionine (S)-S-oxide reductase n=1 Tax=E... [more]
A0A7S2V8A8_9STRA5.630e-4774.16Peptide-methionine (S)-S-oxide reductase n=2 Tax=F... [more]
A0A835YZF7_9STRA1.920e-4671.91Peptide-methionine (S)-S-oxide reductase n=1 Tax=T... [more]
A0A7S3HR50_9STRA4.620e-4572.73Peptide-methionine (S)-S-oxide reductase n=1 Tax=S... [more]
A0A834WC93_9FABA2.530e-4166.29Peptide-methionine (S)-S-oxide reductase n=1 Tax=S... [more]
A0A6P4CPG1_ARADU7.240e-4166.29Peptide-methionine (S)-S-oxide reductase n=3 Tax=A... [more]
A0A1U8B3V2_NELNU2.480e-4068.54Peptide-methionine (S)-S-oxide reductase n=1 Tax=N... [more]
A0A7S3UAA2_9CHLO3.380e-4068.18Peptidylprolyl isomerase n=1 Tax=Picocystis salina... [more]
A0A498I1R5_MALDO3.380e-4065.17Peptide-methionine (S)-S-oxide reductase n=7 Tax=M... [more]
UPI001C4F03A83.980e-4067.42peptide methionine sulfoxide reductase A1-like n=2... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig152312contigH-elongata_contig152312:209..1376 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score142.5
Seed ortholog evalue9.5e-32
Seed eggNOG ortholog4432.XP_010275484.1
Preferred nameMSRA4
KEGG koko:K07304
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006950,GO:0006970,GO:0006979,GO:0008113,GO:0008150,GO:0008152,GO:0009314,GO:0009416,GO:0009507,GO:0009526,GO:0009532,GO:0009536,GO:0009570,GO:0009628,GO:0009651,GO:0009719,GO:0009725,GO:0009735,GO:0009941,GO:0009987,GO:0010033,GO:0016491,GO:0016667,GO:0016671,GO:0031967,GO:0031975,GO:0033554,GO:0034599,GO:0042221,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0050896,GO:0051716,GO:0055114,GO:0070887
EggNOG free text desc.Peptide methionine sulfoxide reductase
EggNOG OGs37JIQ@33090,3GDQG@35493,COG0225@1,KOG1635@2759
EC1.8.4.11
COG Functional cat.O
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionPeptide methionine sulfoxide reductase
Ec32 orthologEc-06_007510.1
Exons2
Model size270
Cds size270
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929900.6195672-CDS-H-elongata_contig152312:208..3091622929900.6195672-CDS-H-elongata_contig152312:208..309Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig152312 209..309 -
1691679200.7578907-CDS-H-elongata_contig152312:208..3091691679200.7578907-CDS-H-elongata_contig152312:208..309Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig152312 209..309 -
1622929900.6344044-CDS-H-elongata_contig152312:1207..13761622929900.6344044-CDS-H-elongata_contig152312:1207..1376Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig152312 1208..1376 -
1691679200.7720509-CDS-H-elongata_contig152312:1207..13761691679200.7720509-CDS-H-elongata_contig152312:1207..1376Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig152312 1208..1376 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig152312.3457.1prot_H-elongata_contig152312.3457.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig152312 209..1376 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig152312.3457.1

>prot_H-elongata_contig152312.3457.1 ID=prot_H-elongata_contig152312.3457.1|Name=mRNA_H-elongata_contig152312.3457.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=90bp
SGCFWGVELAYQRIPGVLETEVGYTDGHKENPTYKEVCAGTTGHTEALRV
KFDPRIVKYNELLTVLWDRIDPTTLNRQGNDRGTQYRSG*
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mRNA from alignment at H-elongata_contig152312:209..1376-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig152312.3457.1 ID=mRNA_H-elongata_contig152312.3457.1|Name=mRNA_H-elongata_contig152312.3457.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1168bp|location=Sequence derived from alignment at H-elongata_contig152312:209..1376- (Himanthalia elongata Himel1 dioecious)
TCAGGTTGCTTCTGGGGAGTCGAGCTCGCGTACCAACGCATACCCGGTGT GCTCGAGACCGAAGTAGGCTACACCGACGGTCACAAAGAGAATCCGACAT ACAAAGAAGTGTGCGCCGGTACAACGGGACACACCGAAGCTCTGCGCGTG AAGTTCGACCCTCGCATCGGTGAGCTGAAGTTTTGCCGTAGGGCGTTATG TGCTTTAAGGACACAACGGCCTTGTAAAGTGGTCTCCTTCGGATTAATGG GAAAGATGAGGATGACGCCTCTGAAGCGTTGAAACCCACCATCCCTGTTA GAAATATTAATAGTTAGTCCGATTCTGTCTTTCTTGAAAAACTGAAGCAG CTGTGGTGATATGCTCCCGTAGACTTCCGCGCAATTTCTTTCTATTGCCA CGAGTTCCTTTTTTCCGGGCGTACTTAGAGAAAGGTACTGTAGGCAAGGC GCAGTCCTCGTCCACCTCTCGACGGCTTCAGAGATATGCGGAGTCACCAG TTGTTAATTAAGAGTCATTCGAAGACGAAACCTCGAAGTGCTTTCATGCT AACTCAGCAAACAGCTTCAAACTATCTTTCTCGCTGAAAGTAAGGCTTAC TGAGTAAGGCTTGCATGGAATTCTGGGAGCACGCTAAGAGTTCTTTATAC CCGTGGCAATGAACTTTCCCACCCGCATGGCTTCCCGCGTCTTGTTTAAT CCTGATCAGACCGGTGCGGGGCATCTTGTAAGCGATCCCTGTACAAACTC TTGCGCGGTAGATTTTTGCTTATTTTTCGAGACTTGTTTTGGGGGGGGGG GTTATGTGTTGCATCCCAAAAATAGTTATTTTAAAGCAGAAACGGAAACC CCACCAAGGCGTTAATATTGCTTCATTGCAGGACAGCAGGTCGGTAACAG GCAGAGATTCAAATTCGCCAGAAATATTTTTGTGTATCATAGGCGAATAT CCATTGCGTAGTTCTAGGCAGCACATAGCGATGATAAATAAAGTAGCATG ACATAATGCGCCAACGATGTTCAATACCTACTCATGCCGATTTCGCCGCT TGTCTCTGCCCTTACAGTCAAATACAACGAACTTTTGACAGTCCTTTGGG ACCGTATTGACCCGACCACGCTCAACAGACAAGGGAATGACCGTGGCACA CAGTACCGCTCGGGGTAA
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Coding sequence (CDS) from alignment at H-elongata_contig152312:209..1376-

>mRNA_H-elongata_contig152312.3457.1 ID=mRNA_H-elongata_contig152312.3457.1|Name=mRNA_H-elongata_contig152312.3457.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=540bp|location=Sequence derived from alignment at H-elongata_contig152312:209..1376- (Himanthalia elongata Himel1 dioecious)
TCAGGTTGCTTCTGGGGAGTCGAGCTCGCGTACCAACGCATACCCGGTGT
GCTCGAGACCGAAGTAGGCTACACCGACGGTCACAAAGAGAATCCGACAT
ACAAAGAAGTGTGCGCCGGTACAACGGGACACACCGAAGCTCTGCGCGTG
AAGTTCGACCCTCGCATCGTCAGGTTGCTTCTGGGGAGTCGAGCTCGCGT
ACCAACGCATACCCGGTGTGCTCGAGACCGAAGTAGGCTACACCGACGGT
CACAAAGAGAATCCGACATACAAAGAAGTGTGCGCCGGTACAACGGGACA
CACCGAAGCTCTGCGCGTGAAGTTCGACCCTCGCATCGTCAAATACAACG
AACTTTTGACAGTCCTTTGGGACCGTATTGACCCGACCACGCTCAACAGA
CAAGGGAATGACCGTGGCACACAGTACCGCTCGGGGTAATCAAATACAAC
GAACTTTTGACAGTCCTTTGGGACCGTATTGACCCGACCACGCTCAACAG
ACAAGGGAATGACCGTGGCACACAGTACCGCTCGGGGTAA
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