mRNA_H-elongata_contig152281.3455.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig152281.3455.1
Unique NamemRNA_H-elongata_contig152281.3455.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig152281.3455.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig152281contigH-elongata_contig152281:700..1557 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size449
Cds size354
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig152281.3455.1prot_H-elongata_contig152281.3455.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig152281 727..1489 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929900.4069135-UTR-H-elongata_contig152281:699..7261622929900.4069135-UTR-H-elongata_contig152281:699..726Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig152281 700..726 +
1691679200.67765-UTR-H-elongata_contig152281:699..7261691679200.67765-UTR-H-elongata_contig152281:699..726Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig152281 700..726 +
1622929900.477878-UTR-H-elongata_contig152281:1489..15571622929900.477878-UTR-H-elongata_contig152281:1489..1557Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig152281 1490..1557 +
1691679200.7080016-UTR-H-elongata_contig152281:1489..15571691679200.7080016-UTR-H-elongata_contig152281:1489..1557Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig152281 1490..1557 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929900.429856-CDS-H-elongata_contig152281:726..10091622929900.429856-CDS-H-elongata_contig152281:726..1009Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig152281 727..1009 +
1691679200.687125-CDS-H-elongata_contig152281:726..10091691679200.687125-CDS-H-elongata_contig152281:726..1009Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig152281 727..1009 +
1622929900.4546833-CDS-H-elongata_contig152281:1418..14891622929900.4546833-CDS-H-elongata_contig152281:1418..1489Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig152281 1419..1489 +
1691679200.6972175-CDS-H-elongata_contig152281:1418..14891691679200.6972175-CDS-H-elongata_contig152281:1418..1489Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig152281 1419..1489 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig152281.3455.1

>prot_H-elongata_contig152281.3455.1 ID=prot_H-elongata_contig152281.3455.1|Name=mRNA_H-elongata_contig152281.3455.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=118bp
MEEYQEFNDFMYDGIRTRPAVAMLTTHADWMQRTRDTIAAAASQPGTSRL
SKNFKRLETALESNPFAFRPSRNKRSRVVDSSWRDAGVKWEETTDLWRHA
PAGVTQDFSTFLQRCLP*
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mRNA from alignment at H-elongata_contig152281:700..1557+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig152281.3455.1 ID=mRNA_H-elongata_contig152281.3455.1|Name=mRNA_H-elongata_contig152281.3455.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=858bp|location=Sequence derived from alignment at H-elongata_contig152281:700..1557+ (Himanthalia elongata Himel1 dioecious)
GATCCCATCAAGCTGAGTCAGTACACCATGGAAGAATACCAGGAGTTTAA
TGACTTCATGTACGACGGAATTCGGACAAGACCCGCGGTGGCGATGCTTA
CAACCCATGCCGATTGGATGCAAAGAACGCGAGACACTATCGCGGCGGCG
GCATCACAGCCAGGCACATCCAGACTCAGCAAGAACTTCAAGAGGCTGGA
GACCGCCCTCGAGAGCAACCCTTTCGCTTTCAGGCCTTCGCGGAACAAGA
GGAGCAGGGTGGTAGATAGTTCGTGGAGAGACGCGGGAGTCAAATGGGAG
GAGACAACTGGTGAGAAGGTCATTCTCATAATGAGTTGTTGTTTTTTTAA
GCTTGAACTCATTCCAACCCTCCGAACATCCACGCCATCTTAGCACCATG
AGAGGTGCAGTCCATAATAATAATACAGGGGTTGATAAATCTGTCAGAGC
GGGAGTCTCCCGGTTTGTTGCCGAACGCTGCTAGGCAACAACCTATCCCA
TGTTGATCGGAGTGTTGCTGGGTGTAGAATGGTAAAGCTTGGTTTTAACT
GTTAAACATACGTAAAAAAAAACACCTTGACGAGTGTTGTTGTACGTCTC
TTCTATCTGTAACAGCACATCAAACATCAAACAGCGGTTTCCGTACAGTA
TCCTGCTCTTTAGACAAGTGTCTCTGTTTGTTTGTGTGTATCCCCTATCC
CATATATTCTGGACGTCAGACTTGTGGAGGCATGCACCAGCCGGGGTCAC
ACAGGATTTCTCCACCTTCCTTCAGCGGTGCTTGCCTTAATCTTACCAGG
TACATGTATCTTCAGCCTTGTTTTCCACCCTGCTCTGGTCGAACGCGGTC
ATCACCGT
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Coding sequence (CDS) from alignment at H-elongata_contig152281:700..1557+

>mRNA_H-elongata_contig152281.3455.1 ID=mRNA_H-elongata_contig152281.3455.1|Name=mRNA_H-elongata_contig152281.3455.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=708bp|location=Sequence derived from alignment at H-elongata_contig152281:700..1557+ (Himanthalia elongata Himel1 dioecious)
ATGGAAGAATACCAGGAGTTTAATGACTTCATGTACGACGGAATTCGGAC
AAGACCCGCGGTGGCGATGCTTACAACCCATGCCGATTGGATGCAAAGAA
CGCGAGACACTATCGCGGCGGCGGCATCACAGCCAGGCACATCCAGACTC
AGCAAGAACTTCAAGAGGCTGGAGACCGCCCTCGAGAGCAACCCTTTCGC
TTTCAGGCCTTCGCGGAACAAGAGGAGCAGGGTGGTAGATAGTTCGTGGA
GAGACGCGGGAGTCAAATGGGAGGAGACAACTGATGGAAGAATACCAGGA
GTTTAATGACTTCATGTACGACGGAATTCGGACAAGACCCGCGGTGGCGA
TGCTTACAACCCATGCCGATTGGATGCAAAGAACGCGAGACACTATCGCG
GCGGCGGCATCACAGCCAGGCACATCCAGACTCAGCAAGAACTTCAAGAG
GCTGGAGACCGCCCTCGAGAGCAACCCTTTCGCTTTCAGGCCTTCGCGGA
ACAAGAGGAGCAGGGTGGTAGATAGTTCGTGGAGAGACGCGGGAGTCAAA
TGGGAGGAGACAACTGACTTGTGGAGGCATGCACCAGCCGGGGTCACACA
GGATTTCTCCACCTTCCTTCAGCGGTGCTTGCCTTAAACTTGTGGAGGCA
TGCACCAGCCGGGGTCACACAGGATTTCTCCACCTTCCTTCAGCGGTGCT
TGCCTTAA
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