mRNA_H-elongata_contig152198.3449.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig152198.3449.1
Unique NamemRNA_H-elongata_contig152198.3449.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig152198.3449.1 vs. uniprot
Match: A0A6H5JRS6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRS6_9PHAE)

HSP 1 Score: 83.2 bits (204), Expect = 1.440e-17
Identity = 42/95 (44.21%), Postives = 64/95 (67.37%), Query Frame = 1 
Query:   13 GFEQGKADPYVFRKVVDGKTEVVVVVLVDNILAHAKDKATMDRFAAELGQKFKLKDMGDARYYIGCHITRNCKAREVKIDQHLYVESMVEKFDVK 297
            GFEQ KADP VFRK+VD    +++V+ VD+IL    D+   +   A L +KF  K++G+ +++ GC I R+ +A  ++I Q  Y++SMVE+FDVK
Sbjct:   51 GFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVK 144
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BLAST of mRNA_H-elongata_contig152198.3449.1 vs. uniprot
Match: A0A6H5KTL3_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTL3_9PHAE)

HSP 1 Score: 83.2 bits (204), Expect = 1.570e-16
Identity = 42/95 (44.21%), Postives = 64/95 (67.37%), Query Frame = 1 
Query:   13 GFEQGKADPYVFRKVVDGKTEVVVVVLVDNILAHAKDKATMDRFAAELGQKFKLKDMGDARYYIGCHITRNCKAREVKIDQHLYVESMVEKFDVK 297
            GFEQ KADP VFRK+VD    +++V+ VD+IL    D+   +   A L +KF  K++G+ +++ GC I R+ +A  ++I Q  Y++SMVE+FDVK
Sbjct:  194 GFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVK 287
[Close]
BLAST of mRNA_H-elongata_contig152198.3449.1 vs. uniprot
Match: A0A6H5KSG8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSG8_9PHAE)

HSP 1 Score: 83.2 bits (204), Expect = 1.760e-16
Identity = 42/95 (44.21%), Postives = 64/95 (67.37%), Query Frame = 1 
Query:   13 GFEQGKADPYVFRKVVDGKTEVVVVVLVDNILAHAKDKATMDRFAAELGQKFKLKDMGDARYYIGCHITRNCKAREVKIDQHLYVESMVEKFDVK 297
            GFEQ KADP VFRK+VD    +++V+ VD+IL    D+   +   A L +KF  K++G+ +++ GC I R+ +A  ++I Q  Y++SMVE+FDVK
Sbjct:  907 GFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVK 1000
[Close]
BLAST of mRNA_H-elongata_contig152198.3449.1 vs. uniprot
Match: A0A6H5JQW4_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQW4_9PHAE)

HSP 1 Score: 83.2 bits (204), Expect = 1.760e-16
Identity = 42/95 (44.21%), Postives = 64/95 (67.37%), Query Frame = 1 
Query:   13 GFEQGKADPYVFRKVVDGKTEVVVVVLVDNILAHAKDKATMDRFAAELGQKFKLKDMGDARYYIGCHITRNCKAREVKIDQHLYVESMVEKFDVK 297
            GFEQ KADP VFRK+VD    +++V+ VD+IL    D+   +   A L +KF  K++G+ +++ GC I R+ +A  ++I Q  Y++SMVE+FDVK
Sbjct: 1016 GFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVK 1109
[Close]
BLAST of mRNA_H-elongata_contig152198.3449.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE)

HSP 1 Score: 83.2 bits (204), Expect = 1.770e-16
Identity = 42/95 (44.21%), Postives = 64/95 (67.37%), Query Frame = 1 
Query:   13 GFEQGKADPYVFRKVVDGKTEVVVVVLVDNILAHAKDKATMDRFAAELGQKFKLKDMGDARYYIGCHITRNCKAREVKIDQHLYVESMVEKFDVK 297
            GFEQ KADP VFRK+VD    +++V+ VD+IL    D+   +   A L +KF  K++G+ +++ GC I R+ +A  ++I Q  Y++SMVE+FDVK
Sbjct: 1286 GFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVK 1379
[Close]
BLAST of mRNA_H-elongata_contig152198.3449.1 vs. uniprot
Match: A0A6H5JN00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN00_9PHAE)

HSP 1 Score: 83.2 bits (204), Expect = 1.770e-16
Identity = 42/95 (44.21%), Postives = 64/95 (67.37%), Query Frame = 1 
Query:   13 GFEQGKADPYVFRKVVDGKTEVVVVVLVDNILAHAKDKATMDRFAAELGQKFKLKDMGDARYYIGCHITRNCKAREVKIDQHLYVESMVEKFDVK 297
            GFEQ KADP VFRK+VD    +++V+ VD+IL    D+   +   A L +KF  K++G+ +++ GC I R+ +A  ++I Q  Y++SMVE+FDVK
Sbjct: 1306 GFEQCKADPCVFRKMVDQVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVK 1399
[Close]
BLAST of mRNA_H-elongata_contig152198.3449.1 vs. uniprot
Match: A0A6H5KF60_9PHAE (Uncharacterized protein n=12 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF60_9PHAE)

HSP 1 Score: 83.2 bits (204), Expect = 1.780e-16
Identity = 42/95 (44.21%), Postives = 64/95 (67.37%), Query Frame = 1 
Query:   13 GFEQGKADPYVFRKVVDGKTEVVVVVLVDNILAHAKDKATMDRFAAELGQKFKLKDMGDARYYIGCHITRNCKAREVKIDQHLYVESMVEKFDVK 297
            GFEQ KADP VFRK+VD    +++V+ VD+IL    D+   +   A L +KF  K++G+ +++ GC I R+ +A  ++I Q  Y++SMVE+FDVK
Sbjct: 1449 GFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVK 1542
[Close]
BLAST of mRNA_H-elongata_contig152198.3449.1 vs. uniprot
Match: A0A6H5K164_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K164_9PHAE)

HSP 1 Score: 82.4 bits (202), Expect = 3.180e-16
Identity = 42/95 (44.21%), Postives = 63/95 (66.32%), Query Frame = 1 
Query:   13 GFEQGKADPYVFRKVVDGKTEVVVVVLVDNILAHAKDKATMDRFAAELGQKFKLKDMGDARYYIGCHITRNCKAREVKIDQHLYVESMVEKFDVK 297
            GFEQ KADP VFRK+VD    +++V+ VD+IL    D+   +   A L +KF  K++G+ +++ GC I R+  A  ++I Q  Y++SMVE+FDVK
Sbjct:  542 GFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVDAGTLRISQTAYIDSMVERFDVK 635
[Close]
BLAST of mRNA_H-elongata_contig152198.3449.1 vs. uniprot
Match: A0A6H5JQN6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQN6_9PHAE)

HSP 1 Score: 82.4 bits (202), Expect = 3.210e-16
Identity = 42/95 (44.21%), Postives = 63/95 (66.32%), Query Frame = 1 
Query:   13 GFEQGKADPYVFRKVVDGKTEVVVVVLVDNILAHAKDKATMDRFAAELGQKFKLKDMGDARYYIGCHITRNCKAREVKIDQHLYVESMVEKFDVK 297
            GFEQ KADP VFRK+VD    +++V+ VD+IL    D+   +   A L +KF  K++G+ +++ GC I R+  A  ++I Q  Y++SMVE+FDVK
Sbjct:  498 GFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVDAGTLRISQTAYIDSMVERFDVK 591
[Close]
BLAST of mRNA_H-elongata_contig152198.3449.1 vs. uniprot
Match: A0A6H5JVD4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVD4_9PHAE)

HSP 1 Score: 81.6 bits (200), Expect = 5.150e-16
Identity = 41/94 (43.62%), Postives = 63/94 (67.02%), Query Frame = 1 
Query:   13 GFEQGKADPYVFRKVVDGKTEVVVVVLVDNILAHAKDKATMDRFAAELGQKFKLKDMGDARYYIGCHITRNCKAREVKIDQHLYVESMVEKFDV 294
            GFEQ KADP VFRK+VD    +++V+ VD+IL    D+   +   A L +KF  K++G+ +++ GC I R+ +A  ++I Q  Y++SMVE+FDV
Sbjct:  130 GFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDV 222
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig152198.3449.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JRS6_9PHAE1.440e-1744.21Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KTL3_9PHAE1.570e-1644.21Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KSG8_9PHAE1.760e-1644.21Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JQW4_9PHAE1.760e-1644.21Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JZQ8_9PHAE1.770e-1644.21Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JN00_9PHAE1.770e-1644.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KF60_9PHAE1.780e-1644.21Uncharacterized protein n=12 Tax=Ectocarpus sp. CC... [more]
A0A6H5K164_9PHAE3.180e-1644.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JQN6_9PHAE3.210e-1644.21Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JVD4_9PHAE5.150e-1643.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig152198contigH-elongata_contig152198:904..1203 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score65.5
Seed ortholog evalue1.6e-08
Seed eggNOG ortholog3055.EDP10003
EggNOG free text desc.Mitochondrial protein
EggNOG OGs34MIE@3041,37THH@33090,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelChlorophyta
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size302
Cds size300
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929899.9625196-CDS-H-elongata_contig152198:903..12031622929899.9625196-CDS-H-elongata_contig152198:903..1203Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig152198 904..1203 +
1691679200.5470586-CDS-H-elongata_contig152198:903..12031691679200.5470586-CDS-H-elongata_contig152198:903..1203Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig152198 904..1203 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig152198.3449.1prot_H-elongata_contig152198.3449.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig152198 904..1203 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig152198.3449.1

>prot_H-elongata_contig152198.3449.1 ID=prot_H-elongata_contig152198.3449.1|Name=mRNA_H-elongata_contig152198.3449.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=100bp
MAAIGFEQGKADPYVFRKVVDGKTEVVVVVLVDNILAHAKDKATMDRFAA
ELGQKFKLKDMGDARYYIGCHITRNCKAREVKIDQHLYVESMVEKFDVKK
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mRNA from alignment at H-elongata_contig152198:904..1203+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig152198.3449.1 ID=mRNA_H-elongata_contig152198.3449.1|Name=mRNA_H-elongata_contig152198.3449.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=300bp|location=Sequence derived from alignment at H-elongata_contig152198:904..1203+ (Himanthalia elongata Himel1 dioecious)
ATGGCGGCGATTGGATTTGAGCAGGGAAAGGCGGATCCGTACGTGTTCCG
TAAGGTCGTTGACGGCAAGACGGAAGTGGTGGTGGTCGTTCTCGTGGACA
ATATTCTTGCTCACGCCAAGGACAAAGCGACTATGGATAGATTCGCGGCT
GAGCTCGGACAAAAGTTCAAATTGAAGGACATGGGTGACGCCAGGTACTA
CATAGGTTGTCACATTACTAGGAACTGCAAGGCGCGCGAGGTGAAGATCG
ACCAACACTTGTACGTGGAGTCGATGGTGGAAAAGTTCGACGTCAAGAAG
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Coding sequence (CDS) from alignment at H-elongata_contig152198:904..1203+

>mRNA_H-elongata_contig152198.3449.1 ID=mRNA_H-elongata_contig152198.3449.1|Name=mRNA_H-elongata_contig152198.3449.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=600bp|location=Sequence derived from alignment at H-elongata_contig152198:904..1203+ (Himanthalia elongata Himel1 dioecious)
ATGGCGGCGATTGGATTTGAGCAGGGAAAGGCGGATCCGTACGTGTTCCG
TAAGGTCGTTGACGGCAAGACGGAAGTGGTGGTGGTCGTTCTCGTGGACA
ATATTCTTGCTCACGCCAAGGACAAAGCGACTATGGATAGATTCGCGGCT
GAGCTCGGACAAAAGTTCAAATTGAAGGACATGGGTGACGCCAGGTACTA
CATAGGTTGTCACATTACTAGGAACTGCAAGGCGCGCGAGGTGAAGATCG
ACCAACACTTGTACGTGGAGTCGATGGTGGAAAAGTTCGACGTCAAGAAG
ATGGCGGCGATTGGATTTGAGCAGGGAAAGGCGGATCCGTACGTGTTCCG
TAAGGTCGTTGACGGCAAGACGGAAGTGGTGGTGGTCGTTCTCGTGGACA
ATATTCTTGCTCACGCCAAGGACAAAGCGACTATGGATAGATTCGCGGCT
GAGCTCGGACAAAAGTTCAAATTGAAGGACATGGGTGACGCCAGGTACTA
CATAGGTTGTCACATTACTAGGAACTGCAAGGCGCGCGAGGTGAAGATCG
ACCAACACTTGTACGTGGAGTCGATGGTGGAAAAGTTCGACGTCAAGAAG
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