mRNA_H-elongata_contig151989.3442.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig151989.3442.1
Unique NamemRNA_H-elongata_contig151989.3442.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig151989.3442.1 vs. uniprot
Match: D7FMC5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMC5_ECTSI)

HSP 1 Score: 130 bits (327), Expect = 1.140e-33
Identity = 59/78 (75.64%), Postives = 70/78 (89.74%), Query Frame = 1
Query:    1 EGSFYPYEALLHTMLHELTHMEIGPHNASFYKMLDELRDECEKLMRQGITGRNMPFAGDGKALGGGRAPVDARTAAVK 234
            EGSFYPYE +L TMLHEL H +IGPH+A FY+MLD+L DEC+KL+R+GITGRNMPFAGDG++LGGGRAP DAR AA+K
Sbjct:   81 EGSFYPYEFILGTMLHELVHNQIGPHSAKFYRMLDQLNDECDKLIREGITGRNMPFAGDGQSLGGGRAPEDARAAALK 158          
BLAST of mRNA_H-elongata_contig151989.3442.1 vs. uniprot
Match: A0A6H5J6X1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J6X1_9PHAE)

HSP 1 Score: 126 bits (316), Expect = 4.560e-32
Identity = 57/78 (73.08%), Postives = 68/78 (87.18%), Query Frame = 1
Query:    1 EGSFYPYEALLHTMLHELTHMEIGPHNASFYKMLDELRDECEKLMRQGITGRNMPFAGDGKALGGGRAPVDARTAAVK 234
            EGSFYPYE ++ TMLHEL H +IGPH+A FY++LD+L DEC+KL R+GITGRNMPFAGDG+ LGGGRAP DAR AA+K
Sbjct:  126 EGSFYPYEFIIGTMLHELVHNQIGPHSAKFYRVLDQLNDECDKLTREGITGRNMPFAGDGQPLGGGRAPNDARAAALK 203          
BLAST of mRNA_H-elongata_contig151989.3442.1 vs. uniprot
Match: A0A835YTT9_9STRA (WLM domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTT9_9STRA)

HSP 1 Score: 91.3 bits (225), Expect = 7.680e-22
Identity = 42/71 (59.15%), Postives = 53/71 (74.65%), Query Frame = 1
Query:    7 SFYPYEALLHTMLHELTHMEIGPHNASFYKMLDELRDECEKLMRQGITGRNMPFAGDGKALGGGRAPVDAR 219
            + YP+E  L  +LHELTHM  G H+A FY++LD LR+ECE LM  GI+GRNMP+ G+G+ALGGG A  D R
Sbjct:   48 ALYPFELALDIVLHELTHMVHGAHSADFYRLLDALREECEALMTAGISGRNMPWQGEGRALGGGSAARDVR 118          
BLAST of mRNA_H-elongata_contig151989.3442.1 vs. uniprot
Match: A0A314Z6I9_PRUYE (DNA-dependent metalloprotease WSS1 isoform X2 n=2 Tax=Prunus yedoensis var. nudiflora TaxID=2094558 RepID=A0A314Z6I9_PRUYE)

HSP 1 Score: 88.6 bits (218), Expect = 1.970e-19
Identity = 42/65 (64.62%), Postives = 47/65 (72.31%), Query Frame = 1
Query:    1 EGSFYPYEALLHTMLHELTHMEIGPHNASFYKMLDELRDECEKLMRQGITGRNMPFAGDGKALGG 195
            E  FYPYE +L TMLHEL H E GPHNA FYK+LDE+R ECE+LM +GITG    F   GK LGG
Sbjct:   42 EWDFYPYEQILDTMLHELCHNEYGPHNADFYKLLDEIRRECEELMAKGITGTAQGFDLPGKRLGG 106          
BLAST of mRNA_H-elongata_contig151989.3442.1 vs. uniprot
Match: A0A6P5TYX8_PRUAV (DNA-dependent metalloprotease WSS1-like isoform X2 n=2 Tax=Prunus TaxID=3754 RepID=A0A6P5TYX8_PRUAV)

HSP 1 Score: 88.6 bits (218), Expect = 2.290e-19
Identity = 42/65 (64.62%), Postives = 47/65 (72.31%), Query Frame = 1
Query:    1 EGSFYPYEALLHTMLHELTHMEIGPHNASFYKMLDELRDECEKLMRQGITGRNMPFAGDGKALGG 195
            E  FYPYE +L TMLHEL H E GPHNA FYK+LDE+R ECE+LM +GITG    F   GK LGG
Sbjct:   79 EWDFYPYEQILDTMLHELCHNEYGPHNADFYKLLDEIRRECEELMAKGITGTAQGFDLPGKRLGG 143          
BLAST of mRNA_H-elongata_contig151989.3442.1 vs. uniprot
Match: A0A4Y1R6C5_PRUDU (Zinc ion-binding protein n=6 Tax=Prunus TaxID=3754 RepID=A0A4Y1R6C5_PRUDU)

HSP 1 Score: 88.6 bits (218), Expect = 5.980e-19
Identity = 42/65 (64.62%), Postives = 47/65 (72.31%), Query Frame = 1
Query:    1 EGSFYPYEALLHTMLHELTHMEIGPHNASFYKMLDELRDECEKLMRQGITGRNMPFAGDGKALGG 195
            E  FYPYE +L TMLHEL H E GPHNA FYK+LDE+R ECE+LM +GITG    F   GK LGG
Sbjct:  140 EWDFYPYEQILDTMLHELCHNEYGPHNADFYKLLDEIRRECEELMAKGITGTAQGFDLPGKRLGG 204          
BLAST of mRNA_H-elongata_contig151989.3442.1 vs. uniprot
Match: A0A6J5UIA0_PRUAR (Uncharacterized protein n=1 Tax=Prunus armeniaca TaxID=36596 RepID=A0A6J5UIA0_PRUAR)

HSP 1 Score: 88.6 bits (218), Expect = 7.030e-19
Identity = 42/65 (64.62%), Postives = 47/65 (72.31%), Query Frame = 1
Query:    1 EGSFYPYEALLHTMLHELTHMEIGPHNASFYKMLDELRDECEKLMRQGITGRNMPFAGDGKALGG 195
            E  FYPYE +L TMLHEL H E GPHNA FYK+LDE+R ECE+LM +GITG    F   GK LGG
Sbjct:  222 EWDFYPYEQILDTMLHELCHNEYGPHNADFYKLLDEIRRECEELMAKGITGTAQGFDLPGKRLGG 286          
BLAST of mRNA_H-elongata_contig151989.3442.1 vs. uniprot
Match: A0A225WUC4_9STRA (Neutral zinc metallopeptidase n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WUC4_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 1.870e-18
Identity = 45/77 (58.44%), Postives = 53/77 (68.83%), Query Frame = 1
Query:   10 FYPYEALLHTMLHELTHMEIGPHNASFYKMLDELRDECEKLMRQGITGR---NMPFAGDGKALGGGRAPVDARTAAV 231
            FYPYEALL T+LHELTHM  GPHN +FY+ LDEL+ E E LM +G+ G+   N   AG G+ LGG  A V  R AAV
Sbjct:   81 FYPYEALLETLLHELTHMVHGPHNQAFYQYLDELKQEMESLMIRGLVGQEGVNFAGAGAGQRLGGNNASVPIRVAAV 157          
BLAST of mRNA_H-elongata_contig151989.3442.1 vs. uniprot
Match: A0A7S0R9Q7_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0R9Q7_9CHLO)

HSP 1 Score: 83.6 bits (205), Expect = 1.890e-18
Identity = 37/66 (56.06%), Postives = 48/66 (72.73%), Query Frame = 1
Query:    4 GSFYPYEALLHTMLHELTHMEIGPHNASFYKMLDELRDECEKLMRQGITGRNMPFAGDGKALGGGR 201
              FYPYE++L T+LHELTH+ +GPHNA+FYK+LDE+ +ECE LM +GITG  + F        GGR
Sbjct:   83 SEFYPYESILGTLLHELTHIVVGPHNAAFYKLLDEITEECEGLMAKGITGTGVGFDAPSAGRLGGR 148          
BLAST of mRNA_H-elongata_contig151989.3442.1 vs. uniprot
Match: T0PRL4_SAPDV (WLM domain-containing protein n=2 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0PRL4_SAPDV)

HSP 1 Score: 85.1 bits (209), Expect = 3.750e-18
Identity = 47/77 (61.04%), Postives = 52/77 (67.53%), Query Frame = 1
Query:    7 SFYPYEALLHTMLHELTHMEIGPHNASFYKMLDELRDECEKLMRQG---ITGRNMPFAGDGKALGGGRAPVDARTAA 228
            SF P+E LL TMLHEL HM+IGPHNA+FYK+LDEL  E E LM QG   ITG     AG G ALGG  A   A+ AA
Sbjct:   78 SFLPFEHLLGTMLHELVHMKIGPHNAAFYKLLDELTSEMESLMAQGLIGITGAQFQNAGQGHALGGANARNVAKAAA 154          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig151989.3442.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FMC5_ECTSI1.140e-3375.64Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
A0A6H5J6X1_9PHAE4.560e-3273.08Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YTT9_9STRA7.680e-2259.15WLM domain-containing protein (Fragment) n=1 Tax=T... [more]
A0A314Z6I9_PRUYE1.970e-1964.62DNA-dependent metalloprotease WSS1 isoform X2 n=2 ... [more]
A0A6P5TYX8_PRUAV2.290e-1964.62DNA-dependent metalloprotease WSS1-like isoform X2... [more]
A0A4Y1R6C5_PRUDU5.980e-1964.62Zinc ion-binding protein n=6 Tax=Prunus TaxID=3754... [more]
A0A6J5UIA0_PRUAR7.030e-1964.62Uncharacterized protein n=1 Tax=Prunus armeniaca T... [more]
A0A225WUC4_9STRA1.870e-1858.44Neutral zinc metallopeptidase n=1 Tax=Phytophthora... [more]
A0A7S0R9Q7_9CHLO1.890e-1856.06Hypothetical protein (Fragment) n=1 Tax=Pyramimona... [more]
T0PRL4_SAPDV3.750e-1861.04WLM domain-containing protein n=2 Tax=Saprolegnia ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig151989contigH-elongata_contig151989:408..1362 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score129.4
Seed ortholog evalue7.2e-28
Seed eggNOG ortholog2880.D7FMC5
GOsGO:0000322,GO:0000323,GO:0000324,GO:0000724,GO:0000725,GO:0000731,GO:0003674,GO:0003824,GO:0004175,GO:0004222,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005737,GO:0005773,GO:0006139,GO:0006259,GO:0006281,GO:0006301,GO:0006302,GO:0006310,GO:0006464,GO:0006508,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0008233,GO:0008237,GO:0009058,GO:0009059,GO:0009314,GO:0009411,GO:0009416,GO:0009628,GO:0009987,GO:0010224,GO:0010225,GO:0012505,GO:0016740,GO:0016787,GO:0016925,GO:0018130,GO:0018193,GO:0018205,GO:0019438,GO:0019538,GO:0019787,GO:0019789,GO:0019985,GO:0031967,GO:0031975,GO:0032182,GO:0032183,GO:0032446,GO:0033554,GO:0034641,GO:0034645,GO:0034654,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0061659,GO:0061665,GO:0070011,GO:0070647,GO:0071704,GO:0071897,GO:0090304,GO:0140096,GO:1901360,GO:1901362,GO:1901564,GO:1901576,GO:1990414,GO:1990466
EggNOG free text desc.zinc ion transmembrane transporter activity
EggNOG OGsKOG1558@1,KOG1558@2759
Ec32 ortholog descriptionWLM
Ec32 orthologEc-00_000920.1
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionZinc finger, RanBP2-type
Ec32 orthologEc-17_003490.1
Exons2
Model size234
Cds size234
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929899.5493226-CDS-H-elongata_contig151989:407..4991622929899.5493226-CDS-H-elongata_contig151989:407..499Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig151989 408..499 -
1691679200.383087-CDS-H-elongata_contig151989:407..4991691679200.383087-CDS-H-elongata_contig151989:407..499Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig151989 408..499 -
1622929899.5599284-CDS-H-elongata_contig151989:1220..13621622929899.5599284-CDS-H-elongata_contig151989:1220..1362Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig151989 1221..1362 -
1691679200.3951428-CDS-H-elongata_contig151989:1220..13621691679200.3951428-CDS-H-elongata_contig151989:1220..1362Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig151989 1221..1362 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig151989.3442.1prot_H-elongata_contig151989.3442.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig151989 408..1362 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig151989.3442.1

>prot_H-elongata_contig151989.3442.1 ID=prot_H-elongata_contig151989.3442.1|Name=mRNA_H-elongata_contig151989.3442.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=78bp
EGSFYPYEALLHTMLHELTHMEIGPHNASFYKMLDELRDECEKLMRQGIT
GRNMPFAGDGKALGGGRAPVDARTAAVK
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mRNA from alignment at H-elongata_contig151989:408..1362-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig151989.3442.1 ID=mRNA_H-elongata_contig151989.3442.1|Name=mRNA_H-elongata_contig151989.3442.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=955bp|location=Sequence derived from alignment at H-elongata_contig151989:408..1362- (Himanthalia elongata Himel1 dioecious)
GAAGGCTCGTTCTATCCATACGAGGCCCTCCTGCACACGATGCTCCACGA GCTCACGCACATGGAGATTGGCCCGCACAACGCCTCTTTCTACAAGATGC TCGACGAGCTACGGGACGAGTGCGAGAAGCTCATGCGCCAAGGTAATGTT TGTTGTTTCATGCTCTCGGCGTATTTTGGTATTGGTTGCCAACCCGGGTC GTCTCTTGTGAATCCCGCTTTTGCGGTTTAGTTGAACTGGGGAAAATATT CCGCATAGGTGTAGTCTAAAAACACTCGAATACATGCGACCGACGCGTGG TTTGGATGGGAACCGCCCGTCCCTCTCGGTAACGCCTCCATGCCATGAAG GCCAACCACTCCCCCCTCCCTCTCCATTCATAAAATTGTGGTAAGTGAAG AAAACAGCTAACCTGTCCACTTGAACATGGCGATGCGTAGTCCCCTGGAT CTATTTCACCTGAACCAGTGCAAAGAAGGCGTGTGAATATTCGAAGGGTT TGAACGATTTAAAAGGAAATCCCTGGAAACCCTAGACTCCTACAGTACTA CTGTTAATCTTCTCAACGCCGCCCTGTTTTGAACTTTGTCGTTTCTCTCT TTCAAAAAAATAAAAGTAAAACGGGGATTCCCCCCTTCCTTCCCGTTTAT CCGATTTTGTTCTGCGGTACAATGTCTCCACAGACCCAAAGAGGTAAGTC TCTCGCGGCTTGCTACACGTGCCCTACTCGGAGCGCCGACTGCTTTTGCT GCAATAGCTTGCTTCGACGTGTTTCATTGGGCTCCTTTTTTTTTTTTTTT GCGCCGCTCTTTCTGTGTCATATGTTATGTCTCGCGCTGACGTCACGTTG CGGGATCCAAAAGGGATCACTGGCCGTAACATGCCGTTCGCGGGAGATGG AAAGGCGCTTGGAGGCGGGCGCGCCCCGGTCGATGCCAGAACCGCAGCCG TCAAG
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Coding sequence (CDS) from alignment at H-elongata_contig151989:408..1362-

>mRNA_H-elongata_contig151989.3442.1 ID=mRNA_H-elongata_contig151989.3442.1|Name=mRNA_H-elongata_contig151989.3442.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=468bp|location=Sequence derived from alignment at H-elongata_contig151989:408..1362- (Himanthalia elongata Himel1 dioecious)
GAAGGCTCGTTCTATCCATACGAGGCCCTCCTGCACACGATGCTCCACGA
GCTCACGCACATGGAGATTGGCCCGCACAACGCCTCTTTCTACAAGATGC
TCGACGAGCTACGGGACGAGTGCGAGAAGCTCATGCGCCAAGGAAGGCTC
GTTCTATCCATACGAGGCCCTCCTGCACACGATGCTCCACGAGCTCACGC
ACATGGAGATTGGCCCGCACAACGCCTCTTTCTACAAGATGCTCGACGAG
CTACGGGACGAGTGCGAGAAGCTCATGCGCCAAGGGATCACTGGCCGTAA
CATGCCGTTCGCGGGAGATGGAAAGGCGCTTGGAGGCGGGCGCGCCCCGG
TCGATGCCAGAACCGCAGCCGTCAAGGGATCACTGGCCGTAACATGCCGT
TCGCGGGAGATGGAAAGGCGCTTGGAGGCGGGCGCGCCCCGGTCGATGCC
AGAACCGCAGCCGTCAAG
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