mRNA_H-elongata_contig151977.3440.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig151977.3440.1
Unique NamemRNA_H-elongata_contig151977.3440.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig151977.3440.1 vs. uniprot
Match: A0A6H5JBD7_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBD7_9PHAE)

HSP 1 Score: 77.8 bits (190), Expect = 3.020e-14
Identity = 51/149 (34.23%), Postives = 71/149 (47.65%), Query Frame = 1 
Query:    7 GKHGVGRSLDVLNVYDRLEYDIIDLQETRRSGHSAFNQAGYSVYCSGKCGGENGGKKGQGGVG-------------------LAIR----------TSITRAAPTETQNASNKHAFWTSLDRAVEEVPRHEQLFVLMDANTRTGMREKG 366
            G +G GR+  VL+   R +  ++ +QETRR+G + F  AG+ V+C   CG E GG  G G                      +A+R            +  +APTE   AS+K  FW  LD  V  +P  E ++VL+DAN RTG R  G
Sbjct:   72 GVNGYGRAYSVLHEAARQDVSVVGMQETRRAGRTEFAAAGFRVFC---CGTETGGVHGVGIAVKESLCKTSTFTTEFIDERLMAMRLLLAGHRGAVNFVAASAPTEPSTASSKRVFWGKLDSLVRRIPSKECVYVLLDANARTGDRLDG 217
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BLAST of mRNA_H-elongata_contig151977.3440.1 vs. uniprot
Match: A0A8D9DZY8_9HEMI (Craniofacial development protein 2 (Fragment) n=1 Tax=Cacopsylla melanoneura TaxID=428564 RepID=A0A8D9DZY8_9HEMI)

HSP 1 Score: 50.8 bits (120), Expect = 7.140e-5
Identity = 38/134 (28.36%), Postives = 56/134 (41.79%), Query Frame = 1 
Query:   37 VLNVYDRLEYDIIDLQETRRSGHSAFNQAGYSVYCSGKCGGENGGKKGQGGVGLAIR-----------------------------TSITRAAPTETQNASNKHAFWTSLDRAVEEVPRHEQLFVLMDANTRTG 351
            V N  ++L  DII LQETR  G        Y +Y SG    +N   +  GGVG A++                             + I+  APTE  +   K  F+T LD   + +P ++  F++ DAN + G
Sbjct:    4 VTNELNKLNMDIIALQETRWPGSGKQVTRDYEIYYSGTS--DN---RFYGGVGFAVKRKYLDNILKFEAIDERLCYLRLKGRFKNISMISMYAPTEESDDERKELFYTKLDNLFQRIPNYDCKFIIGDANAKIG 132
[Close]
BLAST of mRNA_H-elongata_contig151977.3440.1 vs. uniprot
Match: A0A8D8R3K6_9HEMI (Craniofacial development protein 2 (Fragment) n=4 Tax=Cacopsylla melanoneura TaxID=428564 RepID=A0A8D8R3K6_9HEMI)

HSP 1 Score: 50.8 bits (120), Expect = 7.800e-5
Identity = 38/134 (28.36%), Postives = 56/134 (41.79%), Query Frame = 1 
Query:   37 VLNVYDRLEYDIIDLQETRRSGHSAFNQAGYSVYCSGKCGGENGGKKGQGGVGLAIR-----------------------------TSITRAAPTETQNASNKHAFWTSLDRAVEEVPRHEQLFVLMDANTRTG 351
            V N  ++L  DII LQETR  G        Y +Y SG    +N   +  GGVG A++                             + I+  APTE  +   K  F+T LD   + +P ++  F++ DAN + G
Sbjct:    4 VTNELNKLNMDIIALQETRWPGSGKQVTRDYEIYYSGTS--DN---RFYGGVGFAVKRKYLDNILKFEAIDERLCYLRLKGRFKNISMISMYAPTEESDDERKELFYTKLDNLFQRIPNYDCKFIIGDANAKIG 132
[Close]
BLAST of mRNA_H-elongata_contig151977.3440.1 vs. uniprot
Match: A0A8D9ALT4_9HEMI (Craniofacial development protein 2 (Fragment) n=2 Tax=Cacopsylla melanoneura TaxID=428564 RepID=A0A8D9ALT4_9HEMI)

HSP 1 Score: 50.8 bits (120), Expect = 8.060e-5
Identity = 38/134 (28.36%), Postives = 56/134 (41.79%), Query Frame = 1 
Query:   37 VLNVYDRLEYDIIDLQETRRSGHSAFNQAGYSVYCSGKCGGENGGKKGQGGVGLAIR-----------------------------TSITRAAPTETQNASNKHAFWTSLDRAVEEVPRHEQLFVLMDANTRTG 351
            V N  ++L  DII LQETR  G        Y +Y SG    +N   +  GGVG A++                             + I+  APTE  +   K  F+T LD   + +P ++  F++ DAN + G
Sbjct:    4 VTNELNKLNMDIIALQETRWPGSGKQVTRDYEIYYSGTS--DN---RFYGGVGFAVKRKYLDNILKFEAIDERLCYLRLKGRFKNISMISMYAPTEESDDERKELFYTKLDNLFQRIPNYDCKFIIGDANAKIG 132
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig151977.3440.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5JBD7_9PHAE3.020e-1434.23Reverse transcriptase domain-containing protein n=... [more]
A0A8D9DZY8_9HEMI7.140e-528.36Craniofacial development protein 2 (Fragment) n=1 ... [more]
A0A8D8R3K6_9HEMI7.800e-528.36Craniofacial development protein 2 (Fragment) n=4 ... [more]
A0A8D9ALT4_9HEMI8.060e-528.36Craniofacial development protein 2 (Fragment) n=2 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig151977contigH-elongata_contig151977:1025..1390 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size366
Cds size366
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929899.1820402-CDS-H-elongata_contig151977:1024..13901622929899.1820402-CDS-H-elongata_contig151977:1024..1390Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig151977 1025..1390 -
1691679200.330003-CDS-H-elongata_contig151977:1024..13901691679200.330003-CDS-H-elongata_contig151977:1024..1390Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig151977 1025..1390 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig151977.3440.1prot_H-elongata_contig151977.3440.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig151977 1025..1390 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig151977.3440.1

>prot_H-elongata_contig151977.3440.1 ID=prot_H-elongata_contig151977.3440.1|Name=mRNA_H-elongata_contig151977.3440.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=122bp
MDGKHGVGRSLDVLNVYDRLEYDIIDLQETRRSGHSAFNQAGYSVYCSGK
CGGENGGKKGQGGVGLAIRTSITRAAPTETQNASNKHAFWTSLDRAVEEV
PRHEQLFVLMDANTRTGMREKG
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mRNA from alignment at H-elongata_contig151977:1025..1390-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig151977.3440.1 ID=mRNA_H-elongata_contig151977.3440.1|Name=mRNA_H-elongata_contig151977.3440.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=366bp|location=Sequence derived from alignment at H-elongata_contig151977:1025..1390- (Himanthalia elongata Himel1 dioecious)
ATGGATGGGAAGCACGGAGTTGGACGGTCTCTAGATGTTCTGAATGTATA
CGACCGACTGGAGTACGACATTATCGATCTGCAGGAGACCCGCCGCAGTG
GACATTCAGCCTTCAATCAGGCTGGCTACTCGGTGTACTGCAGTGGTAAG
TGCGGTGGGGAAAATGGTGGGAAGAAAGGGCAAGGTGGAGTAGGTCTAGC
TATTAGAACCTCCATCACACGTGCTGCCCCCACTGAAACACAAAATGCTA
GTAATAAACATGCATTCTGGACGAGCTTGGATAGAGCTGTGGAGGAGGTA
CCTAGACACGAACAGCTGTTCGTGTTGATGGATGCCAACACCCGCACAGG
GATGAGGGAGAAGGGA
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Coding sequence (CDS) from alignment at H-elongata_contig151977:1025..1390-

>mRNA_H-elongata_contig151977.3440.1 ID=mRNA_H-elongata_contig151977.3440.1|Name=mRNA_H-elongata_contig151977.3440.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=732bp|location=Sequence derived from alignment at H-elongata_contig151977:1025..1390- (Himanthalia elongata Himel1 dioecious)
ATGGATGGGAAGCACGGAGTTGGACGGTCTCTAGATGTTCTGAATGTATA
CGACCGACTGGAGTACGACATTATCGATCTGCAGGAGACCCGCCGCAGTG
GACATTCAGCCTTCAATCAGGCTGGCTACTCGGTGTACTGCAGTGGTAAG
TGCGGTGGGGAAAATGGTGGGAAGAAAGGGCAAGGTGGAGTAGGTCTAGC
TATTAGAACCTCCATCACACGTGCTGCCCCCACTGAAACACAAAATGCTA
GTAATAAACATGCATTCTGGACGAGCTTGGATAGAGCTGTGGAGGAGGTA
CCTAGACACGAACAGCTGTTCGTGTTGATGGATGCCAACACCCGCACAGG
GATGAGGGAGAAGGGAATGGATGGGAAGCACGGAGTTGGACGGTCTCTAG
ATGTTCTGAATGTATACGACCGACTGGAGTACGACATTATCGATCTGCAG
GAGACCCGCCGCAGTGGACATTCAGCCTTCAATCAGGCTGGCTACTCGGT
GTACTGCAGTGGTAAGTGCGGTGGGGAAAATGGTGGGAAGAAAGGGCAAG
GTGGAGTAGGTCTAGCTATTAGAACCTCCATCACACGTGCTGCCCCCACT
GAAACACAAAATGCTAGTAATAAACATGCATTCTGGACGAGCTTGGATAG
AGCTGTGGAGGAGGTACCTAGACACGAACAGCTGTTCGTGTTGATGGATG
CCAACACCCGCACAGGGATGAGGGAGAAGGGA
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