mRNA_H-elongata_contig151953.3437.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig151953.3437.1
Unique NamemRNA_H-elongata_contig151953.3437.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig151953.3437.1 vs. uniprot
Match: D7FWI8_ECTSI (Histone H2B n=5 Tax=Ectocarpus TaxID=2879 RepID=D7FWI8_ECTSI)

HSP 1 Score: 203 bits (517), Expect = 6.490e-66
Identity = 110/116 (94.83%), Postives = 111/116 (95.69%), Query Frame = 1 
Query:    1 MAKTPSKKSATSPKKAGGKK-ANKRIESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 345
            MAKTPSKKSA +PKKAG KK  NKR ESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS
Sbjct:    1 MAKTPSKKSAKAPKKAGDKKRTNKRTESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 116
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BLAST of mRNA_H-elongata_contig151953.3437.1 vs. uniprot
Match: H2B_OLILU (Histone H2B n=1 Tax=Olisthodiscus luteus TaxID=83000 RepID=H2B_OLILU)

HSP 1 Score: 190 bits (482), Expect = 1.320e-60
Identity = 97/115 (84.35%), Postives = 110/115 (95.65%), Query Frame = 1 
Query:    1 MAKTPSKKSATSPKKAGGKKANKRIESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 345
            MAKTPSKK+A +PKKAG K+ NKR+E+YSSYIYKVLKQVHPDTGISKRGMSIMNSFIND+FER+AGE+ +L RYNK++TLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKFTS+
Sbjct:    1 MAKTPSKKAAKAPKKAGSKR-NKRVETYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDIFERLAGEASRLARYNKRSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTSN 114
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BLAST of mRNA_H-elongata_contig151953.3437.1 vs. uniprot
Match: A0A6U6DWX5_9STRA (Histone H2B n=4 Tax=Odontella aurita TaxID=265563 RepID=A0A6U6DWX5_9STRA)

HSP 1 Score: 190 bits (482), Expect = 1.650e-60
Identity = 98/115 (85.22%), Postives = 109/115 (94.78%), Query Frame = 1 
Query:    1 MAKTPSKKSATSPKKAGGKKANKRIESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 345
            MAKTPSKK+A  PKKAGGK++ KR ESYSSYIYKVLKQVHPDTGISK+GMSIMNSFIND+FER+A E+GKL+ YNKKATLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKF+S+
Sbjct:    8 MAKTPSKKAAA-PKKAGGKRSRKRTESYSSYIYKVLKQVHPDTGISKKGMSIMNSFINDIFERIASEAGKLSTYNKKATLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFSSA 121
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BLAST of mRNA_H-elongata_contig151953.3437.1 vs. uniprot
Match: A0A485K2U0_9STRA (Histone H2B n=29 Tax=Stramenopiles TaxID=33634 RepID=A0A485K2U0_9STRA)

HSP 1 Score: 189 bits (481), Expect = 2.200e-60
Identity = 100/118 (84.75%), Postives = 109/118 (92.37%), Query Frame = 1 
Query:    1 MAKTPSKKSATSPKKAGGKKAN---KRIESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 345
            MAKTPSKKSA +PKK G K  N   KRIESYS+YIYKVLKQVHP+TGISKRGMSIMNSFIND+FER+A E+GKL+RYNKK+TLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKFTSS
Sbjct:    1 MAKTPSKKSAKAPKKTGEKGKNRKVKRIESYSTYIYKVLKQVHPETGISKRGMSIMNSFINDIFERIASEAGKLSRYNKKSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 118
[Close]
BLAST of mRNA_H-elongata_contig151953.3437.1 vs. uniprot
Match: A0A836CJ22_9STRA (Histone H2B n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJ22_9STRA)

HSP 1 Score: 189 bits (479), Expect = 4.310e-60
Identity = 101/117 (86.32%), Postives = 107/117 (91.45%), Query Frame = 1 
Query:    1 MAKTPSKKSATSPKKA--GGKKANKRIESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 345
            MAK PSKK+A +PKKA  G KK  KR ESY SYIYKVLKQVHPDTGISKRGMSIMNSFINDVFER+A E+GKLTRYNKK+TLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKFTSS
Sbjct:    1 MAKIPSKKAAKAPKKAADGKKKKAKRTESYGSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERIASEAGKLTRYNKKSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 117
[Close]
BLAST of mRNA_H-elongata_contig151953.3437.1 vs. uniprot
Match: A0A6U0X3U9_9STRA (Histone H2B n=2 Tax=Dictyochophyceae TaxID=39119 RepID=A0A6U0X3U9_9STRA)

HSP 1 Score: 189 bits (479), Expect = 6.540e-60
Identity = 99/116 (85.34%), Postives = 109/116 (93.97%), Query Frame = 1 
Query:    1 MAKTPSKKSATSPKKAGGK-KANKRIESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 345
            MAKTPSKKSA +PKKAG K K  KR ESYSSYIYKVLKQVHP+TGISK+GMSIMNSFIND+FER+AGE+G+L RY+KKATLSSRE+QT+VRLMLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   15 MAKTPSKKSAKAPKKAGDKVKKGKRTESYSSYIYKVLKQVHPETGISKKGMSIMNSFINDIFERLAGEAGRLARYSKKATLSSREIQTSVRLMLPGELAKHAVSEGTKAVTKFTSS 130
[Close]
BLAST of mRNA_H-elongata_contig151953.3437.1 vs. uniprot
Match: B7FWR8_PHATC (Histone H2B n=13 Tax=Bacillariophyta TaxID=2836 RepID=B7FWR8_PHATC)

HSP 1 Score: 184 bits (468), Expect = 1.920e-58
Identity = 97/116 (83.62%), Postives = 107/116 (92.24%), Query Frame = 1 
Query:    1 MAKTPSKKSATSPKKAG-GKKANKRIESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 345
            MAKTPSK+SA +PKKA  G K+ KR E+YSSYIYKVLKQVHPDTGISK+GMSIMNSFIND+FER+A E+GKL  YNKKATLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKF+SS
Sbjct:    1 MAKTPSKQSAKAPKKAATGTKSKKRTETYSSYIYKVLKQVHPDTGISKKGMSIMNSFINDIFERIATEAGKLATYNKKATLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFSSS 116
[Close]
BLAST of mRNA_H-elongata_contig151953.3437.1 vs. uniprot
Match: A0A836CJT3_9STRA (Histone H2B n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJT3_9STRA)

HSP 1 Score: 189 bits (479), Expect = 2.860e-58
Identity = 101/117 (86.32%), Postives = 107/117 (91.45%), Query Frame = 1 
Query:    1 MAKTPSKKSATSPKKA--GGKKANKRIESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 345
            MAK PSKK+A +PKKA  G KK  KR ESY SYIYKVLKQVHPDTGISKRGMSIMNSFINDVFER+A E+GKLTRYNKK+TLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKFTSS
Sbjct:  134 MAKIPSKKAAKAPKKAADGKKKKAKRTESYGSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERIASEAGKLTRYNKKSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 250
[Close]
BLAST of mRNA_H-elongata_contig151953.3437.1 vs. uniprot
Match: A0A7S4ACZ1_9STRA (Histone H2B n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4ACZ1_9STRA)

HSP 1 Score: 182 bits (461), Expect = 2.470e-57
Identity = 96/119 (80.67%), Postives = 106/119 (89.08%), Query Frame = 1 
Query:    1 MAKTPSKKSATS----PKKAGGKKANKRIESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 345
            MAKTPSKK+A +    PKK  G K  KR+ESYS+YIYKVLKQVHPDTGISK+GMSIMNSFIND+FER+A E+GKL  YNKKATLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKF+SS
Sbjct:    1 MAKTPSKKAAPAAKNPPKKGPGGKKKKRVESYSTYIYKVLKQVHPDTGISKKGMSIMNSFINDIFERIATEAGKLATYNKKATLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFSSS 119
[Close]
BLAST of mRNA_H-elongata_contig151953.3437.1 vs. uniprot
Match: A0A7S2U5X6_9STRA (Histone H2B (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2U5X6_9STRA)

HSP 1 Score: 181 bits (458), Expect = 6.420e-57
Identity = 93/111 (83.78%), Postives = 102/111 (91.89%), Query Frame = 1 
Query:    1 MAKTPSKKSATSPKKAGGKKANKRIESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTK 333
            MAKTPSKKSA   K + GK+  KR+ESYSSYIYKVLKQVHPDTGISK+GMSIMNSFIND+FER+A E+GKL+ YNKKATLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTK
Sbjct:    6 MAKTPSKKSAVPKKASTGKRNKKRVESYSSYIYKVLKQVHPDTGISKKGMSIMNSFINDIFERIASEAGKLSTYNKKATLSSREIQTAVRLMLPGELAKHAVSEGTKAVTK 116
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig151953.3437.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FWI8_ECTSI6.490e-6694.83Histone H2B n=5 Tax=Ectocarpus TaxID=2879 RepID=D7... [more]
H2B_OLILU1.320e-6084.35Histone H2B n=1 Tax=Olisthodiscus luteus TaxID=830... [more]
A0A6U6DWX5_9STRA1.650e-6085.22Histone H2B n=4 Tax=Odontella aurita TaxID=265563 ... [more]
A0A485K2U0_9STRA2.200e-6084.75Histone H2B n=29 Tax=Stramenopiles TaxID=33634 Rep... [more]
A0A836CJ22_9STRA4.310e-6086.32Histone H2B n=2 Tax=Tribonema minus TaxID=303371 R... [more]
A0A6U0X3U9_9STRA6.540e-6085.34Histone H2B n=2 Tax=Dictyochophyceae TaxID=39119 R... [more]
B7FWR8_PHATC1.920e-5883.62Histone H2B n=13 Tax=Bacillariophyta TaxID=2836 Re... [more]
A0A836CJT3_9STRA2.860e-5886.32Histone H2B n=1 Tax=Tribonema minus TaxID=303371 R... [more]
A0A7S4ACZ1_9STRA2.470e-5780.67Histone H2B n=1 Tax=Pseudo-nitzschia australis Tax... [more]
A0A7S2U5X6_9STRA6.420e-5783.78Histone H2B (Fragment) n=1 Tax=Attheya septentrion... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig151953contigH-elongata_contig151953:575..922 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score205.7
Seed ortholog evalue1.2e-50
Seed eggNOG ortholog2880.D7FWI8
KEGG koko:K11252
KEGG Pathwayko05034,ko05203,ko05322,map05034,map05203,map05322
GOsGO:0000228,GO:0000785,GO:0000786,GO:0000788,GO:0000790,GO:0003674,GO:0003676,GO:0003677,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005657,GO:0005694,GO:0006325,GO:0006333,GO:0006996,GO:0008150,GO:0009987,GO:0016043,GO:0031298,GO:0031974,GO:0031981,GO:0032991,GO:0032993,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043596,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0044815,GO:0051276,GO:0070013,GO:0071840,GO:0097159,GO:1901363
EggNOG free text desc.protein heterodimerization activity
EggNOG OGsKOG1744@1,KOG1744@2759
COG Functional cat.B
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036,ko04147
Hectar predicted targeting categoryother localisation
Exons1
Model size348
Cds size348
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929898.975086-CDS-H-elongata_contig151953:574..9221622929898.975086-CDS-H-elongata_contig151953:574..922Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig151953 575..922 +
1691679200.221119-CDS-H-elongata_contig151953:574..9221691679200.221119-CDS-H-elongata_contig151953:574..922Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig151953 575..922 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig151953.3437.1prot_H-elongata_contig151953.3437.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig151953 575..922 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig151953.3437.1

>prot_H-elongata_contig151953.3437.1 ID=prot_H-elongata_contig151953.3437.1|Name=mRNA_H-elongata_contig151953.3437.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=116bp
MAKTPSKKSATSPKKAGGKKANKRIESYSSYIYKVLKQVHPDTGISKRGM
SIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKH
AVSEGTKAVTKFTSS*
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mRNA from alignment at H-elongata_contig151953:575..922+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig151953.3437.1 ID=mRNA_H-elongata_contig151953.3437.1|Name=mRNA_H-elongata_contig151953.3437.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=348bp|location=Sequence derived from alignment at H-elongata_contig151953:575..922+ (Himanthalia elongata Himel1 dioecious)
ATGGCTAAAACTCCCTCTAAGAAATCAGCCACATCACCTAAGAAGGCTGG
CGGCAAGAAGGCAAACAAGAGAATCGAGTCTTACTCTTCGTATATATATA
AGGTGCTCAAGCAAGTCCACCCGGACACGGGTATTTCCAAACGTGGAATG
TCCATAATGAATTCCTTCATTAACGACGTGTTCGAGCGCGTGGCTGGCGA
GTCAGGCAAGCTTACCCGCTATAACAAGAAGGCTACTCTTTCTTCACGTG
AGGTCCAGACGGCGGTGCGCCTCATGCTTCCAGGAGAGCTCGCGAAACAC
GCCGTATCGGAGGGCACAAAAGCGGTCACTAAATTCACATCATCTTGA
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Coding sequence (CDS) from alignment at H-elongata_contig151953:575..922+

>mRNA_H-elongata_contig151953.3437.1 ID=mRNA_H-elongata_contig151953.3437.1|Name=mRNA_H-elongata_contig151953.3437.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=696bp|location=Sequence derived from alignment at H-elongata_contig151953:575..922+ (Himanthalia elongata Himel1 dioecious)
ATGGCTAAAACTCCCTCTAAGAAATCAGCCACATCACCTAAGAAGGCTGG
CGGCAAGAAGGCAAACAAGAGAATCGAGTCTTACTCTTCGTATATATATA
AGGTGCTCAAGCAAGTCCACCCGGACACGGGTATTTCCAAACGTGGAATG
TCCATAATGAATTCCTTCATTAACGACGTGTTCGAGCGCGTGGCTGGCGA
GTCAGGCAAGCTTACCCGCTATAACAAGAAGGCTACTCTTTCTTCACGTG
AGGTCCAGACGGCGGTGCGCCTCATGCTTCCAGGAGAGCTCGCGAAACAC
GCCGTATCGGAGGGCACAAAAGCGGTCACTAAATTCACATCATCTTGAAT
GGCTAAAACTCCCTCTAAGAAATCAGCCACATCACCTAAGAAGGCTGGCG
GCAAGAAGGCAAACAAGAGAATCGAGTCTTACTCTTCGTATATATATAAG
GTGCTCAAGCAAGTCCACCCGGACACGGGTATTTCCAAACGTGGAATGTC
CATAATGAATTCCTTCATTAACGACGTGTTCGAGCGCGTGGCTGGCGAGT
CAGGCAAGCTTACCCGCTATAACAAGAAGGCTACTCTTTCTTCACGTGAG
GTCCAGACGGCGGTGCGCCTCATGCTTCCAGGAGAGCTCGCGAAACACGC
CGTATCGGAGGGCACAAAAGCGGTCACTAAATTCACATCATCTTGA
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