mRNA_H-elongata_contig151935.3435.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig151935.3435.1
Unique NamemRNA_H-elongata_contig151935.3435.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig151935.3435.1 vs. uniprot
Match: D8LFB2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFB2_ECTSI)

HSP 1 Score: 158 bits (400), Expect = 3.020e-42
Identity = 90/159 (56.60%), Postives = 108/159 (67.92%), Query Frame = 1 
Query:    1 GRGDEQSISRVRDTMMARIHEVASQPASIEEEEEKGN--GAEEVDDKGDNYEAS----LGNENPQTRG---------GAGSGAAALKDDWVEETVDHPTPDYGLSSPVIRYLLQQWSSDPEKLRYLSLWLRCVVERRKVPDAFPSGLQLVGLAPEIKVG 432
            G  D QSISRVR+ MMAR+ E A +   +E++E  G   G +  D  G N + S       EN +  G         G  +    ++D+WVEETV+HP PDYGL SPVIRYLLQQWS+DP+KL+YLSLWLRCV+ERRKVPDAFPSGLQLVGLAPEIK G
Sbjct:  634 GEADHQSISRVRENMMARLQEAARE-GKVEQKETSGGAGGVKNKDVGGANTDNSGSQGASGENKEETGSDVKHVSDVGMAAAPRTVEDEWVEETVEHPPPDYGLESPVIRYLLQQWSTDPDKLKYLSLWLRCVIERRKVPDAFPSGLQLVGLAPEIKDG 791
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BLAST of mRNA_H-elongata_contig151935.3435.1 vs. uniprot
Match: A0A6H5KJ68_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ68_9PHAE)

HSP 1 Score: 157 bits (396), Expect = 1.230e-41
Identity = 86/160 (53.75%), Postives = 109/160 (68.12%), Query Frame = 1 
Query:    1 GRGDEQSISRVRDTMMARIHEVASQPASIEEEEEKGNGAEEVDDK--------GDNYEASLGNENPQTRG--------GAGSGAAALKDDWVEETVDHPTPDYGLSSPVIRYLLQQWSSDPEKLRYLSLWLRCVVERRKVPDAFPSGLQLVGLAPEIKVG 432
            G  D++SISRVR+ MMAR+ E A +  +  E++E   GA+ V +K            + + GN   +TR         G  +    ++D+WVEE V+HP PDYGL SPVIRYLLQQWS+DP+K++YLSLWLRCV+ERRKVPDAFPSGLQLVGLAPEIK G
Sbjct:  872 GEADQRSISRVRENMMARLQEAAREGKA--EQKETSGGADGVKNKDVGHANTNNSGLQGASGNNMEETRSENKDVSDVGMAAAPRTVEDEWVEENVEHPPPDYGLESPVIRYLLQQWSTDPDKIKYLSLWLRCVIERRKVPDAFPSGLQLVGLAPEIKDG 1029
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BLAST of mRNA_H-elongata_contig151935.3435.1 vs. uniprot
Match: A0A7S2DMV1_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DMV1_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 2.340e-19
Identity = 36/70 (51.43%), Postives = 51/70 (72.86%), Query Frame = 1 
Query:  223 WVEETVDHPTPDYGLSSPVIRYLLQQWSSDPEKLRYLSLWLRCVVERRKVPDAFPSGLQLVGLAPEIKVG 432
            W +E+  HP P +G+  PVI++LL  W+SDP+KLRY+SLWL  +   +++ + FP+GLQLV L PEIK G
Sbjct:   32 WEDESTLHPVPPFGIEDPVIQHLLTNWTSDPQKLRYVSLWLTVLAGTKEIAETFPAGLQLVSLRPEIKDG 101
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BLAST of mRNA_H-elongata_contig151935.3435.1 vs. uniprot
Match: A0A7S2SI89_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SI89_9STRA)

HSP 1 Score: 91.3 bits (225), Expect = 9.420e-19
Identity = 41/73 (56.16%), Postives = 54/73 (73.97%), Query Frame = 1 
Query:  223 WVEETVDHPTPDYGLSSPVIRYLLQQWSSDPEKLRYLSLWLRCVVER---RKVPDAFPSGLQLVGLAPEIKVG 432
            W  ET D+P P +G+ SPVI++LL  W+SDP+KLRY+SLWL  ++       VP++FPSGLQL+GL PEIK G
Sbjct:  203 WRRETQDNPVPPFGIGSPVIQHLLASWTSDPQKLRYVSLWLSVLINEDPATPVPESFPSGLQLIGLKPEIKDG 275
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BLAST of mRNA_H-elongata_contig151935.3435.1 vs. uniprot
Match: A0A7S2SIB0_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SIB0_9STRA)

HSP 1 Score: 91.3 bits (225), Expect = 1.270e-18
Identity = 41/73 (56.16%), Postives = 54/73 (73.97%), Query Frame = 1 
Query:  223 WVEETVDHPTPDYGLSSPVIRYLLQQWSSDPEKLRYLSLWLRCVVER---RKVPDAFPSGLQLVGLAPEIKVG 432
            W  ET D+P P +G+ SPVI++LL  W+SDP+KLRY+SLWL  ++       VP++FPSGLQL+GL PEIK G
Sbjct:  655 WRRETQDNPVPPFGIGSPVIQHLLASWTSDPQKLRYVSLWLSVLINEDPATPVPESFPSGLQLIGLKPEIKDG 727
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BLAST of mRNA_H-elongata_contig151935.3435.1 vs. uniprot
Match: A0A7S2DLI1_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DLI1_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 1.380e-18
Identity = 36/70 (51.43%), Postives = 51/70 (72.86%), Query Frame = 1 
Query:  223 WVEETVDHPTPDYGLSSPVIRYLLQQWSSDPEKLRYLSLWLRCVVERRKVPDAFPSGLQLVGLAPEIKVG 432
            W +E+  HP P +G+  PVI++LL  W+SDP+KLRY+SLWL  +   +++ + FP+GLQLV L PEIK G
Sbjct:   32 WEDESTLHPVPPFGIEDPVIQHLLTNWTSDPQKLRYVSLWLTVLAGTKEIAETFPAGLQLVSLRPEIKDG 101
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BLAST of mRNA_H-elongata_contig151935.3435.1 vs. uniprot
Match: M4C0U4_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4C0U4_HYAAE)

HSP 1 Score: 62.4 bits (150), Expect = 1.290e-8
Identity = 29/78 (37.18%), Postives = 47/78 (60.26%), Query Frame = 1 
Query:  202 AAALKDDWVEETVDHPTPDYGLSSPVIRYLLQQWSSDPEKLRYLSLWL-RCVVERRKVPDAFPSGLQLVGLAPEIKVG 432
            A A+   W EE V HPTP + + SP + Y+LQ W+++ +K+RYL  WL +  + +  +P  FP  ++L  L  E++ G
Sbjct:  274 ADAVNSKWHEELVRHPTPHFEMHSPEVAYILQAWTNNIKKIRYLRRWLIQVAITKGPLPKDFPMAVELPRLPLEVRDG 351
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BLAST of mRNA_H-elongata_contig151935.3435.1 vs. uniprot
Match: A0A7S3K3N6_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3K3N6_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 2.730e-8
Identity = 29/76 (38.16%), Postives = 42/76 (55.26%), Query Frame = 1 
Query:  223 WVEETVDHPTPDYGLSSPVIRYLLQQWSSDPEKLRYLSLWLRCVVERR------KVPDAFPSGLQLVGLAPEIKVG 432
            W   T+  P P +G+ SP I +L+ QW++DP+K +Y+ LWL    +         +P  FP GLQL GL  E+  G
Sbjct:  483 WQTLTITEPCPSFGIRSPEIDHLIDQWTNDPKKAQYVRLWLAVAADAYGATGNVALPAKFPRGLQLAGLRHELLHG 558
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BLAST of mRNA_H-elongata_contig151935.3435.1 vs. uniprot
Match: A0A2D4BTB6_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BTB6_PYTIN)

HSP 1 Score: 56.2 bits (134), Expect = 2.190e-6
Identity = 32/87 (36.78%), Postives = 47/87 (54.02%), Query Frame = 1 
Query:  184 GGAGSGAAALKDD----WVEETVDHPTPDYGLSSPVIRYLLQQWSSDPEKLRYLSLWLRCVVERRKVPDAFPSGLQLVGLAPEIKVG 432
            G AGS A  L+ D    WVEET   P P   L+SP+I+ LL  W++D  ++ +L+ WL   +         P+ L+L GL+ E+  G
Sbjct:  923 GSAGSAAKRLESDYDDKWVEETAPFPAPPGDLNSPLIKCLLDHWTTDKSRIMHLTDWLHHAIRG----TGKPTPLRLEGLSSEVAAG 1005
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig151935.3435.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
D8LFB2_ECTSI3.020e-4256.60Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KJ68_9PHAE1.230e-4153.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2DMV1_9STRA2.340e-1951.43Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S2SI89_9STRA9.420e-1956.16Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2SIB0_9STRA1.270e-1856.16Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2DLI1_9STRA1.380e-1851.43Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
M4C0U4_HYAAE1.290e-837.18Uncharacterized protein n=1 Tax=Hyaloperonospora a... [more]
A0A7S3K3N6_9STRA2.730e-838.16Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A2D4BTB6_PYTIN2.190e-636.78Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig151935contigH-elongata_contig151935:275..1460 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score164.9
Seed ortholog evalue2.9e-38
Seed eggNOG ortholog2880.D8LFB2
EggNOG OGs28PZD@1,2RY8W@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size432
Cds size432
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig151935.3435.1prot_H-elongata_contig151935.3435.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig151935 275..1460 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929898.4350526-CDS-H-elongata_contig151935:274..5581622929898.4350526-CDS-H-elongata_contig151935:274..558Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig151935 275..558 +
1691679200.157911-CDS-H-elongata_contig151935:274..5581691679200.157911-CDS-H-elongata_contig151935:274..558Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig151935 275..558 +
1622929898.8600502-CDS-H-elongata_contig151935:1090..11751622929898.8600502-CDS-H-elongata_contig151935:1090..1175Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig151935 1091..1175 +
1691679200.1683335-CDS-H-elongata_contig151935:1090..11751691679200.1683335-CDS-H-elongata_contig151935:1090..1175Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig151935 1091..1175 +
1622929898.8732715-CDS-H-elongata_contig151935:1397..14601622929898.8732715-CDS-H-elongata_contig151935:1397..1460Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig151935 1398..1460 +
1691679200.1766367-CDS-H-elongata_contig151935:1397..14601691679200.1766367-CDS-H-elongata_contig151935:1397..1460Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig151935 1398..1460 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig151935.3435.1

>prot_H-elongata_contig151935.3435.1 ID=prot_H-elongata_contig151935.3435.1|Name=mRNA_H-elongata_contig151935.3435.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=144bp
GRGDEQSISRVRDTMMARIHEVASQPASIEEEEEKGNGAEEVDDKGDNYE
ASLGNENPQTRGGAGSGAAALKDDWVEETVDHPTPDYGLSSPVIRYLLQQ
WSSDPEKLRYLSLWLRCVVERRKVPDAFPSGLQLVGLAPEIKVG
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mRNA from alignment at H-elongata_contig151935:275..1460+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig151935.3435.1 ID=mRNA_H-elongata_contig151935.3435.1|Name=mRNA_H-elongata_contig151935.3435.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1186bp|location=Sequence derived from alignment at H-elongata_contig151935:275..1460+ (Himanthalia elongata Himel1 dioecious)
GGGAGGGGGGACGAGCAGTCCATCAGCCGAGTGCGCGACACGATGATGGC
GAGGATTCACGAAGTCGCCAGTCAGCCCGCTTCGATCGAAGAGGAGGAGG
AGAAAGGGAATGGGGCGGAAGAAGTCGATGATAAAGGCGACAACTACGAG
GCTTCCCTCGGGAACGAAAACCCACAGACGCGAGGGGGTGCTGGTTCCGG
GGCGGCTGCTTTGAAAGACGATTGGGTCGAGGAGACTGTGGATCATCCTA
CCCCAGATTACGGACTCAGCTCCCCCGTCATCCGGTGAGCGAGAGTAAAG
ACGAGTTGTTTTCCGTAGGTGAAGAAGGGGTTGTTGAAGCGTTATAGTAC
TAGTGACGTTGACCGCATGTCTATTCGCGAGGTGAGACTCTGGCCTTCGC
CGCGGTTCGAGTCATTTGTTGCGGAAGCGATAAATGATGTTGGCGGAAAT
GTCATGAAGAACGCTCGATCGAGCGGTGAGGCTATGGGCCCCCCGGAAGA
TATGCACCATCCGTGTCAAGTAACCCAGCTCAACTGATCATTGTGTCTTC
CTCTATTGATTACATCGTTCATTGAATGGTGGTCCTTTTTGATCTGCTTC
TTGCTTGCTCGCTCCATCGTTGCCCACGGCAGCGTGGCGTGACGAGACCT
TGATTGGCGCCCATTGTTCCTCCTATTCGTTCACGGTGCTCATGTCTCAT
TTCTGCTAGTCTATATATTATATATAAATTAATATATATATATATATATT
CTGTAAATCGATTTTTAATATATTCTGTCTATTTGCCTTACATCTCTCAT
GATCATGCTGTACCAGATACCTGCTCCAGCAGTGGTCTTCAGATCCGGAA
AAGCTGAGATACCTCTCTCTCTGGCTCCGTTGTGTCGTCGAGCGCCGGAA
GGTGAGCACCGTAGGGGGCTCGTCCTCGCGGTTCCGTCGCACCATCCCGA
ATTGACCTAGACTTAGAACTCGACCAATCGTGTTTGCCAGTTGCGCGTAG
CTTGCCCAACGCGCCGCGTATATTGACGACCGGGGGCTTTCGTTTCTGAC
ACGACGCACACGAAGCAATGATTGACACCCGCCCGCCTGCCTGCATATTT
CTCTGCTTTTATCATGCCTCCAGGTGCCGGACGCGTTCCCGTCGGGGTTG
CAGCTGGTAGGGCTTGCTCCCGAGATCAAGGTGGGA
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Coding sequence (CDS) from alignment at H-elongata_contig151935:275..1460+

>mRNA_H-elongata_contig151935.3435.1 ID=mRNA_H-elongata_contig151935.3435.1|Name=mRNA_H-elongata_contig151935.3435.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=864bp|location=Sequence derived from alignment at H-elongata_contig151935:275..1460+ (Himanthalia elongata Himel1 dioecious)
GGGAGGGGGGACGAGCAGTCCATCAGCCGAGTGCGCGACACGATGATGGC
GAGGATTCACGAAGTCGCCAGTCAGCCCGCTTCGATCGAAGAGGAGGAGG
AGAAAGGGAATGGGGCGGAAGAAGTCGATGATAAAGGCGACAACTACGAG
GCTTCCCTCGGGAACGAAAACCCACAGACGCGAGGGGGTGCTGGTTCCGG
GGCGGCTGCTTTGAAAGACGATTGGGTCGAGGAGACTGTGGATCATCCTA
CCCCAGATTACGGACTCAGCTCCCCCGTCATCCGGGGAGGGGGGACGAGC
AGTCCATCAGCCGAGTGCGCGACACGATGATGGCGAGGATTCACGAAGTC
GCCAGTCAGCCCGCTTCGATCGAAGAGGAGGAGGAGAAAGGGAATGGGGC
GGAAGAAGTCGATGATAAAGGCGACAACTACGAGGCTTCCCTCGGGAACG
AAAACCCACAGACGCGAGGGGGTGCTGGTTCCGGGGCGGCTGCTTTGAAA
GACGATTGGGTCGAGGAGACTGTGGATCATCCTACCCCAGATTACGGACT
CAGCTCCCCCGTCATCCGATACCTGCTCCAGCAGTGGTCTTCAGATCCGG
AAAAGCTGAGATACCTCTCTCTCTGGCTCCGTTGTGTCGTCGAGCGCCGG
AAGATACCTGCTCCAGCAGTGGTCTTCAGATCCGGAAAAGCTGAGATACC
TCTCTCTCTGGCTCCGTTGTGTCGTCGAGCGCCGGAAGGTGCCGGACGCG
TTCCCGTCGGGGTTGCAGCTGGTAGGGCTTGCTCCCGAGATCAAGGTGGG
AGTGCCGGACGCGTTCCCGTCGGGGTTGCAGCTGGTAGGGCTTGCTCCCG
AGATCAAGGTGGGA
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