mRNA_H-elongata_contig151926.3433.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig151926.3433.1
Unique NamemRNA_H-elongata_contig151926.3433.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig151926.3433.1 vs. uniprot
Match: D8LM32_ECTSI (Dolichol phosphate-mannose biosynthesis regulatory protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LM32_ECTSI)

HSP 1 Score: 111 bits (278), Expect = 1.200e-30
Identity = 58/70 (82.86%), Postives = 63/70 (90.00%), Query Frame = 1
Query:    1 LSLSVIIFVYYTLWVIILPFVDTSHPVQDFFLPRKYAIAIPTVLVIVLVNFGAAFIGFTLMQSARKRKLK 210
            L +SV IFVYYTLWVI+LPFVDTSHPVQDFFLPRKYAIAIPTVLVI+LV   A FIG TLM+SARK+KLK
Sbjct:   14 LLVSVTIFVYYTLWVIVLPFVDTSHPVQDFFLPRKYAIAIPTVLVILLVTLVATFIGLTLMKSARKQKLK 83          
BLAST of mRNA_H-elongata_contig151926.3433.1 vs. uniprot
Match: H3HBK0_PHYRM (Dolichol phosphate-mannose biosynthesis regulatory protein n=14 Tax=Phytophthora TaxID=4783 RepID=H3HBK0_PHYRM)

HSP 1 Score: 78.2 bits (191), Expect = 1.990e-17
Identity = 33/68 (48.53%), Postives = 53/68 (77.94%), Query Frame = 1
Query:    1 LSLSVIIFVYYTLWVIILPFVDTSHPVQDFFLPRKYAIAIPTVLVIVLVNFGAAFIGFTLMQSARKRK 204
            L++SV+++VYY++WV++ PF+D  HP+Q FFLP  YAI+IP VL+++L +  A FIG  +++S +K K
Sbjct:   13 LAISVVVYVYYSIWVLLTPFIDEDHPIQQFFLPYHYAISIPAVLLVLLFSGAATFIGMVMIKSQKKTK 80          
BLAST of mRNA_H-elongata_contig151926.3433.1 vs. uniprot
Match: A0A0W8DZJ5_PHYNI (Dolichol phosphate-mannose biosynthesis regulatory protein n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8DZJ5_PHYNI)

HSP 1 Score: 79.0 bits (193), Expect = 2.130e-17
Identity = 34/68 (50.00%), Postives = 54/68 (79.41%), Query Frame = 1
Query:    1 LSLSVIIFVYYTLWVIILPFVDTSHPVQDFFLPRKYAIAIPTVLVIVLVNFGAAFIGFTLMQSARKRK 204
            L++SVI++VYY++WV++ PF+D  HP+Q FFLP  YAI+IP VL+++L +  A FIG  +++S +K+K
Sbjct:   42 LAVSVIVYVYYSIWVLLTPFIDEEHPIQQFFLPYYYAISIPAVLLVLLFSGAATFIGMVMIKSQKKKK 109          
BLAST of mRNA_H-elongata_contig151926.3433.1 vs. uniprot
Match: A0A6A3T4G2_9STRA (Dolichol phosphate-mannose biosynthesis regulatory protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A6A3T4G2_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 8.100e-17
Identity = 34/68 (50.00%), Postives = 51/68 (75.00%), Query Frame = 1
Query:    1 LSLSVIIFVYYTLWVIILPFVDTSHPVQDFFLPRKYAIAIPTVLVIVLVNFGAAFIGFTLMQSARKRK 204
            L++SV++FVYY++WV++ PF+D  H VQ FFLP  YAI IP VL+++L    A FIG  +++S +K+K
Sbjct:   13 LAISVVVFVYYSIWVLLTPFIDEGHVVQQFFLPYHYAITIPAVLLVLLFTGAATFIGMVMIKSQKKKK 80          
BLAST of mRNA_H-elongata_contig151926.3433.1 vs. uniprot
Match: A0A0P1AD60_PLAHL (Dolichol phosphate-mannose biosynthesis regulatory protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AD60_PLAHL)

HSP 1 Score: 76.3 bits (186), Expect = 1.150e-16
Identity = 31/65 (47.69%), Postives = 49/65 (75.38%), Query Frame = 1
Query:   10 SVIIFVYYTLWVIILPFVDTSHPVQDFFLPRKYAIAIPTVLVIVLVNFGAAFIGFTLMQSARKRK 204
            SV++++YY++WV++ PF D  HP+QDFFLP  YAI++P VL+++L    A FIG  +++S  K+K
Sbjct:   16 SVVLYIYYSIWVLLTPFFDEGHPIQDFFLPYHYAISVPAVLLVLLFTGAATFIGMVMIESREKKK 80          
BLAST of mRNA_H-elongata_contig151926.3433.1 vs. uniprot
Match: A0A2D4C8D2_PYTIN (Dolichol phosphate-mannose biosynthesis regulatory protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C8D2_PYTIN)

HSP 1 Score: 75.9 bits (185), Expect = 1.630e-16
Identity = 35/68 (51.47%), Postives = 50/68 (73.53%), Query Frame = 1
Query:    1 LSLSVIIFVYYTLWVIILPFVDTSHPVQDFFLPRKYAIAIPTVLVIVLVNFGAAFIGFTLMQSARKRK 204
            L +SV+++VYYT WVI+ PFVD  HP Q FFLP +YAIAIP +L+++L    A+FIG  +++S   +K
Sbjct:   13 LLISVVVYVYYTAWVIVTPFVDQHHPFQRFFLPYQYAIAIPAILLVLLFTGAASFIGMVMIRSKNAKK 80          
BLAST of mRNA_H-elongata_contig151926.3433.1 vs. uniprot
Match: D0NPA5_PHYIT (Dolichol phosphate-mannose biosynthesis regulatory protein n=1 Tax=Phytophthora infestans (strain T30-4) TaxID=403677 RepID=D0NPA5_PHYIT)

HSP 1 Score: 76.6 bits (187), Expect = 2.080e-16
Identity = 31/68 (45.59%), Postives = 55/68 (80.88%), Query Frame = 1
Query:    1 LSLSVIIFVYYTLWVIILPFVDTSHPVQDFFLPRKYAIAIPTVLVIVLVNFGAAFIGFTLMQSARKRK 204
            L++SV+++VYY++WV++ PF++ +HP++ FFLP  YAI+IP VL+++L +  A FIG  +++S +K+K
Sbjct:   49 LTISVVVYVYYSIWVLLTPFIEENHPIRQFFLPYHYAISIPAVLLVLLFSGAATFIGMVMIKSQKKKK 116          
BLAST of mRNA_H-elongata_contig151926.3433.1 vs. uniprot
Match: A0A8K1CUP8_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CUP8_PYTOL)

HSP 1 Score: 74.3 bits (181), Expect = 6.630e-16
Identity = 33/68 (48.53%), Postives = 50/68 (73.53%), Query Frame = 1
Query:    1 LSLSVIIFVYYTLWVIILPFVDTSHPVQDFFLPRKYAIAIPTVLVIVLVNFGAAFIGFTLMQSARKRK 204
            L +S+ ++VYYT+WVI+ PF+D  H +Q FFLP  YAIAIP +L+++L +  A FIG  +++S  K+K
Sbjct:   13 LLISIAVYVYYTVWVILTPFIDQDHAIQRFFLPYHYAIAIPALLIVLLFSGAATFIGLVMIRSKNKKK 80          
BLAST of mRNA_H-elongata_contig151926.3433.1 vs. uniprot
Match: A0A3F2RMF1_9STRA (Dolichol phosphate-mannose biosynthesis regulatory protein n=1 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RMF1_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 1.320e-15
Identity = 32/68 (47.06%), Postives = 52/68 (76.47%), Query Frame = 1
Query:    1 LSLSVIIFVYYTLWVIILPFVDTSHPVQDFFLPRKYAIAIPTVLVIVLVNFGAAFIGFTLMQSARKRK 204
            L++S++++VYYT+WV++ PFVD  HP+  FFLP  YAI+IP V +++L +  A FIG  +++S +K+K
Sbjct:  172 LTISIVVYVYYTIWVLLTPFVDEDHPIHQFFLPYHYAISIPAVFLVLLFSGAATFIGMVMIKSQKKKK 239          
BLAST of mRNA_H-elongata_contig151926.3433.1 vs. uniprot
Match: C3ZP87_BRAFL (Dolichol phosphate-mannose biosynthesis regulatory protein n=3 Tax=Branchiostoma TaxID=7737 RepID=C3ZP87_BRAFL)

HSP 1 Score: 72.0 bits (175), Expect = 5.570e-15
Identity = 32/69 (46.38%), Postives = 47/69 (68.12%), Query Frame = 1
Query:    4 SLSVIIFVYYTLWVIILPFVDTSHPVQDFFLPRKYAIAIPTVLVIVLVNFGAAFIGFTLMQSARKRKLK 210
            +LS +IF YYT+W ++LPFVD  H V  +FLPR YA+ IPTV  +V ++   +F G+ ++Q   K+K K
Sbjct:   15 ALSALIFTYYTIWTVVLPFVDDDHIVHQYFLPRPYAVIIPTVAGVVALSAIGSFFGYVMLQDKMKKKAK 83          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig151926.3433.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LM32_ECTSI1.200e-3082.86Dolichol phosphate-mannose biosynthesis regulatory... [more]
H3HBK0_PHYRM1.990e-1748.53Dolichol phosphate-mannose biosynthesis regulatory... [more]
A0A0W8DZJ5_PHYNI2.130e-1750.00Dolichol phosphate-mannose biosynthesis regulatory... [more]
A0A6A3T4G2_9STRA8.100e-1750.00Dolichol phosphate-mannose biosynthesis regulatory... [more]
A0A0P1AD60_PLAHL1.150e-1647.69Dolichol phosphate-mannose biosynthesis regulatory... [more]
A0A2D4C8D2_PYTIN1.630e-1651.47Dolichol phosphate-mannose biosynthesis regulatory... [more]
D0NPA5_PHYIT2.080e-1645.59Dolichol phosphate-mannose biosynthesis regulatory... [more]
A0A8K1CUP8_PYTOL6.630e-1648.53Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A3F2RMF1_9STRA1.320e-1547.06Dolichol phosphate-mannose biosynthesis regulatory... [more]
C3ZP87_BRAFL5.570e-1546.38Dolichol phosphate-mannose biosynthesis regulatory... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig151926contigH-elongata_contig151926:1..895 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score109.8
Seed ortholog evalue5.6e-22
Seed eggNOG ortholog2880.D8LM32
Preferred nameDPM2
KEGG rclassRC00005
KEGG koko:K09658
KEGG ReactionR01009,R05916
KEGG Pathwayko00510,ko00563,ko01100,map00510,map00563,map01100
GOsGO:0000030,GO:0000506,GO:0003674,GO:0003824,GO:0004582,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0006066,GO:0006464,GO:0006486,GO:0006487,GO:0006493,GO:0006497,GO:0006505,GO:0006506,GO:0006629,GO:0006643,GO:0006644,GO:0006650,GO:0006661,GO:0006664,GO:0006720,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009247,GO:0009987,GO:0012505,GO:0016020,GO:0016021,GO:0016093,GO:0016254,GO:0016740,GO:0016757,GO:0016758,GO:0019348,GO:0019538,GO:0019637,GO:0030234,GO:0031224,GO:0031501,GO:0031647,GO:0031984,GO:0032991,GO:0033185,GO:0034645,GO:0035268,GO:0035269,GO:0036211,GO:0042157,GO:0042158,GO:0042175,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043413,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044267,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0045017,GO:0046467,GO:0046474,GO:0046486,GO:0046488,GO:0048471,GO:0050790,GO:0065007,GO:0065008,GO:0065009,GO:0070085,GO:0071704,GO:0090407,GO:0097502,GO:0097713,GO:0098772,GO:0098796,GO:0098827,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576,GO:1901615,GO:1902494,GO:1903509,GO:1990234
EggNOG free text desc.dolichol metabolic process
EggNOG OGsKOG3488@1,KOG3488@2759
COG Functional cat.T
CAZyGT2
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionDolichol phosphate-mannose biosynthesis regulatory protein
Ec32 orthologEc-14_002700.1
Exons2
Model size219
Cds size219
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929898.3508635-CDS-H-elongata_contig151926:0..541622929898.3508635-CDS-H-elongata_contig151926:0..54Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig151926 1..54 +
1691679200.1112874-CDS-H-elongata_contig151926:0..541691679200.1112874-CDS-H-elongata_contig151926:0..54Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig151926 1..54 +
1622929898.3613732-CDS-H-elongata_contig151926:730..8951622929898.3613732-CDS-H-elongata_contig151926:730..895Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig151926 731..895 +
1691679200.1280427-CDS-H-elongata_contig151926:730..8951691679200.1280427-CDS-H-elongata_contig151926:730..895Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig151926 731..895 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig151926.3433.1prot_H-elongata_contig151926.3433.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig151926 1..895 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig151926.3433.1

>prot_H-elongata_contig151926.3433.1 ID=prot_H-elongata_contig151926.3433.1|Name=mRNA_H-elongata_contig151926.3433.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=73bp
LSLSVIIFVYYTLWVIILPFVDTSHPVQDFFLPRKYAIAIPTVLVIVLVN
FGAAFIGFTLMQSARKRKLKVA*
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mRNA from alignment at H-elongata_contig151926:1..895+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig151926.3433.1 ID=mRNA_H-elongata_contig151926.3433.1|Name=mRNA_H-elongata_contig151926.3433.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=895bp|location=Sequence derived from alignment at H-elongata_contig151926:1..895+ (Himanthalia elongata Himel1 dioecious)
CTGTCGTTGAGCGTCATCATCTTCGTGTACTACACGCTTTGGGTGATCAT ATTGGTGAGAACCTCCCCAGCAGAAGTGCTCCAGACGGCGCTTTTCCACA CGTTGAAGAGCTTCGTCGTTGCGTGATTAATTATCACGCGTGATTAGCAT TAACAGTGTTTTCATTTTTAATGGGTTTTCTTCACTTGTTGCCACTCGCT TGAGGTGAATCGTTGAAACGTTATCGTGATGCCACGGTATCACAAGTTTT GAGTGTTGCGTGATACGAAAGCCTGTGCAGAGGTTTGTTGAGCAAACTAT GGCACAGCCTCGTGAAAGCTAGGATTAGTTGCGCTGAGGGGCTGGTATTT TTTTCCCTGGGAGATAGTACGAGACAGGAGACCGATCGCCCTTTGCCGCC GAATCGGCCGGACATGCCCATCAAATACCGTTCGGTAACCCCCCCCCCTC CCCGAGAATAAATATCCCGCTCGATTTTATTGATATCTATGCAACGCACT CAGCAGCACAAAACGCAGCTAATTGGACAAGATCTCGGTACGATCCCGAA ATTAGCTCTCATCGTCTGTACTTTGTACTTTGCTTTGTCTAATAATAGGA AAAATGGACAAAGGGGAGGGAAGGGGTTCCCATCCCCTATCCCCTGGTTG GTTAATTACTTTGCCACCCCGACGTGTGTATGTGCTCCGCCGCGCCGTGC CATCTTTCGTGCTTGCTTCTTCATCCGCAGCCGTTCGTGGACACGTCGCA CCCGGTGCAGGATTTCTTTCTGCCTAGGAAGTATGCCATCGCGATACCTA CGGTCCTGGTAATCGTGCTCGTCAATTTCGGCGCGGCCTTCATCGGATTC ACTCTCATGCAATCCGCTCGGAAGCGAAAGCTGAAAGTGGCATAA
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Coding sequence (CDS) from alignment at H-elongata_contig151926:1..895+

>mRNA_H-elongata_contig151926.3433.1 ID=mRNA_H-elongata_contig151926.3433.1|Name=mRNA_H-elongata_contig151926.3433.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=438bp|location=Sequence derived from alignment at H-elongata_contig151926:1..895+ (Himanthalia elongata Himel1 dioecious)
CTGTCGTTGAGCGTCATCATCTTCGTGTACTACACGCTTTGGGTGATCAT
ATTGCTGTCGTTGAGCGTCATCATCTTCGTGTACTACACGCTTTGGGTGA
TCATATTGCCGTTCGTGGACACGTCGCACCCGGTGCAGGATTTCTTTCTG
CCTAGGAAGTATGCCATCGCGATACCTACGGTCCTGGTAATCGTGCTCGT
CAATTTCGGCGCGGCCTTCATCGGATTCACTCTCATGCAATCCGCTCGGA
AGCGAAAGCTGAAAGTGGCATAACCGTTCGTGGACACGTCGCACCCGGTG
CAGGATTTCTTTCTGCCTAGGAAGTATGCCATCGCGATACCTACGGTCCT
GGTAATCGTGCTCGTCAATTTCGGCGCGGCCTTCATCGGATTCACTCTCA
TGCAATCCGCTCGGAAGCGAAAGCTGAAAGTGGCATAA
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