mRNA_H-elongata_contig15185.3431.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig15185.3431.1
Unique NamemRNA_H-elongata_contig15185.3431.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig15185.3431.1 vs. uniprot
Match: D7FLN7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FLN7_ECTSI)

HSP 1 Score: 272 bits (695), Expect = 7.940e-86
Identity = 159/346 (45.95%), Postives = 208/346 (60.12%), Query Frame = 1 
Query:    4 VHMLPESSETLSASWGDAFPWGGFLCSLGFLLILSTDQAVRIAQAGGQHTSSEGHTLVPTEPPLDAAEHNSPRLLRNDGHHGDGGDYTALVREGARVSPRSLLDKELTRKRTGNGSQVGGSENGVDQGYNRNGSDLESIDGSVSHRVAPLDGGSYGGSSLNSGRRSGGGSDFVAHEDSRTHHGSGDVVHHVHSHGLGSSADGMLLRLALLLALSVHSVMEGLGLGAKPTKAYNLLFAIGIHKGLAAYALGTALLQSAMPFSKLVGYMIAFALMSPLGILLGSMIEKTGE-DAAGATCVALASGTFLYVALMEVLPPELDSTKHGWAKMASLFAGFSLSALMGWIVG 1038
            VHMLPESSETL+ +WGD FPW GFLCS GFLL+L  DQ V I+ A  +     GH+LVPTEPP     ++  +    +G      D   L    A +SP++LL            S +G SE  V +G + N                                           +D   H G GD +   H+HGLG   DG+ +RLALLLALSVHSVMEGLG+GA+ TKAY+LLFAIG+HKG+A YALG ALLQS +   ++  Y++AF+ M+PLGIL+G++I++  + D+ GA CVALA+GTFLYV+LMEVLPPEL ST++GW+KM SL  GF ++  +GW+VG
Sbjct:   64 VHMLPESSETLNDAWGDVFPWAGFLCSFGFLLVLFIDQGVSISHARSKKGRKGGHSLVPTEPPSAEGLNSFGQGQGVNGGSHRNTDSEDLAEVMAAISPKALLGY----------SAMGDSEEAVVRGGHTN-------------------------------------------DD---HSGDGDHLRGAHAHGLGEEGDGVWVRLALLLALSVHSVMEGLGVGAEATKAYDLLFAIGVHKGIAGYALGAALLQSGVHAKQVTLYILAFSAMTPLGILIGAIIQQDADNDSGGAVCVALAAGTFLYVSLMEVLPPELASTENGWSKMGSLVLGFLVATGVGWLVG 353
[Close]
BLAST of mRNA_H-elongata_contig15185.3431.1 vs. uniprot
Match: D7FLN8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FLN8_ECTSI)

HSP 1 Score: 258 bits (660), Expect = 5.780e-80
Identity = 165/353 (46.74%), Postives = 203/353 (57.51%), Query Frame = 1 
Query:    4 VHMLPESSETLSASWGDAFPWGGFLCSLGFLLILSTDQAVRIAQAGGQHTSSEGHTLVPTEPP-LDAAEHNSPRLLRNDGHHGDGGDYTALVREGARVSPRSLLDKELTRKRTGNGSQVGGSENGVDQGYNRNGSDLESIDGSVSHRVAPLDGGSYGGSSLNSGRRSGGGSDFVAHEDSRTHHGSGDVVHHVHSHG------LGSSADGMLLRLALLLALSVHSVMEGLGLGAKPTKAYNLLFAIGIHKGLAAYALGTALLQSAMPFSKLVGYMIAFALMSPLGILLGSMIEKTGED-AAGATCVALASGTFLYVALMEVLPPELDSTKHGWAKMASLFAGFSLSALMGWIVG 1038
            VHMLPESSETL+ +WGD FPWGG+ C+ GFLLIL  DQAV I+ A  +     GH+LVPTEPP +D       R   N G H +         E A +SP++LL            S +G S   V +G   NG D     G                       + G     ++   S   HG  D   H    G                    LLALSVHSVMEGLG+GAK TKAYNLLFAIG+HKGLAAYALG +LLQS +   ++  ++IAF+ M+PLGILLG++IEK GED + GA CVALA+GTFLYV+LMEVLPPEL ST++GW+KM SL  GF +SA +GW+VG
Sbjct:   62 VHMLPESSETLNDAWGDVFPWGGYFCAFGFLLILCIDQAVSISHARRRKGRKGGHSLVPTEPPSVDDLNRFGQRRGINGGSHRNTDSEDLAELEMAAISPKALLGS----------SAMGDSHEAVVRGGGTNG-DRNGNGGEAGGAXXXXXXXXXXXXXXXXCPQQG----LISSPSSTDSHGDEDCADHHXXXGHAXXXXXXXXXXXXXXXXXXLLALSVHSVMEGLGVGAKTTKAYNLLFAIGVHKGLAAYALGASLLQSGVYGKQVTLFVIAFSAMTPLGILLGALIEKDGEDDSGGAVCVALAAGTFLYVSLMEVLPPELASTENGWSKMGSLVLGFVVSAGVGWLVG 399
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BLAST of mRNA_H-elongata_contig15185.3431.1 vs. uniprot
Match: A0A3R7GT88_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7GT88_9STRA)

HSP 1 Score: 128 bits (322), Expect = 6.490e-31
Identity = 69/138 (50.00%), Postives = 96/138 (69.57%), Query Frame = 1 
Query:  571 HVHSHGLGSSADGMLLRLALLL--ALSVHSVMEGLGLGAKPTKAYNLLFAIGIHKGLAAYALGTALLQSAMPFSKLVGYMIAFALMSPLGILLGSMI--EKTGEDAAGATCVALASGTFLYVALMEVLPPELDSTKHG 972
            H H  G G  AD   L +A++L  ALS HSV+EGLG+GA+   A+ +  AI +HKGLAA+ALG+ L+QSAMP +++  YM+ F+ MS +GI++G +I  + + + AA   CVALASGTF+YVA+MEV+P E     HG
Sbjct:  139 HSHLGGAGDQADAGSLAVAMVLFIALSFHSVLEGLGIGAQTETAWGVFMAIVMHKGLAAFALGSGLVQSAMPVAQVTLYMVVFSFMSIIGIIIGWIIAADSSEDSAAAGICVALASGTFIYVAVMEVIPQEFPRHSHG 276
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BLAST of mRNA_H-elongata_contig15185.3431.1 vs. uniprot
Match: A0A662Y4D4_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662Y4D4_9STRA)

HSP 1 Score: 129 bits (323), Expect = 8.440e-31
Identity = 79/179 (44.13%), Postives = 113/179 (63.13%), Query Frame = 1 
Query:  550 GSGDVVH-HV-HSHGLGSSADG----MLLRLALLLALSVHSVMEGLGLGAKPTKAYNLLFAIGIHKGLAAYALGTALLQSAMPFSKLVGYMIAFALMSPLGILLGSMI--EKTGEDAAGATCVALASGTFLYVALMEVLPPELDSTKHG-------------WAKMASLFAGFSLSALM 1023
            GS +V H H  HSH LG  A G    + + + L +ALS HSV+EGLG+GA+   A+ + FAI +HKGLAA+ALG+ L+QSAMP + ++ YM+ F+ MS +GI++G +I  + + + AA   CVALASGTF+YVA+MEV+P E     HG               K  +L AG+++  L+
Sbjct:  159 GSSNVRHSHAGHSH-LGGGAHGDAGSLAVAMVLFIALSFHSVLEGLGIGAQTQSAWGVFFAIVVHKGLAAFALGSGLVQSAMPAAHVMLYMVVFSFMSIIGIIVGWIIAADSSEDSAAAGICVALASGTFIYVAVMEVIPQEFPRHGHGDDDRHSPQKVDLTTQKSLALVAGYAIFGLL 336
[Close]
BLAST of mRNA_H-elongata_contig15185.3431.1 vs. uniprot
Match: G5ABV8_PHYSP (Uncharacterized protein n=4 Tax=Phytophthora TaxID=4783 RepID=G5ABV8_PHYSP)

HSP 1 Score: 125 bits (315), Expect = 1.120e-29
Identity = 68/141 (48.23%), Postives = 96/141 (68.09%), Query Frame = 1 
Query:  568 HHVHSHGLG----SSADGMLLRLALLLALSVHSVMEGLGLGAKPTKAYNLLFAIGIHKGLAAYALGTALLQSAMPFSKLVGYMIAFALMSPLGILLGSMI--EKTGEDAAGATCVALASGTFLYVALMEVLPPELDSTKHG 972
            H  HSHG G    + A  + + + L +ALS HSV+EGLG+GA+   A+ +  AI +HKGLAA+ALG+ L+QSAMP + ++ YM  F+ MS +GI++G +I  + + + AA   CVALASGTF+YVA+MEV+P E     HG
Sbjct:  161 HAGHSHGPGHADEADAGSLAVAIVLFIALSFHSVLEGLGIGAQTETAWGVFMAIIMHKGLAAFALGSGLVQSAMPVTYVMLYMFVFSFMSIIGIVVGWIIAADSSEDSAAAGICVALASGTFIYVAVMEVIPQEFPRHSHG 301
[Close]
BLAST of mRNA_H-elongata_contig15185.3431.1 vs. uniprot
Match: D0NNK1_PHYIT (Zinc (Zn2)-Iron (Fe2) Permease (ZIP) family n=15 Tax=Phytophthora TaxID=4783 RepID=D0NNK1_PHYIT)

HSP 1 Score: 125 bits (313), Expect = 1.890e-29
Identity = 72/168 (42.86%), Postives = 105/168 (62.50%), Query Frame = 1 
Query:  577 HSHGLGS----SADGMLLRLALLLALSVHSVMEGLGLGAKPTKAYNLLFAIGIHKGLAAYALGTALLQSAMPFSKLVGYMIAFALMSPLGILLGSMI--EKTGEDAAGATCVALASGTFLYVALMEVLPPELDSTKHGWA-------------KMASLFAGFSLSALM 1023
            HSH  G+     A  M + + L +ALS HSV+EGLG+GA+   A+ +  AI +HKGLAA+ALG+ L+QSAMP + ++ YM+ F+ MS +GI++G +I  + + + AA   CVALASGTF+YVA+MEV+P E     HG               K  +L AG+++  L+
Sbjct:  159 HSHFGGAHKEPEAGSMAVAMVLFIALSFHSVLEGLGIGAQTETAWGVFMAIIMHKGLAAFALGSGLVQSAMPATHVMLYMVVFSFMSIIGIIVGWIIAADSSEDSAAAGICVALASGTFIYVAVMEVIPQEFPRHSHGGGEDHGHHKNTMTLKKSIALVAGYAIFGLL 326
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BLAST of mRNA_H-elongata_contig15185.3431.1 vs. uniprot
Match: H3GY93_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GY93_PHYRM)

HSP 1 Score: 124 bits (311), Expect = 3.110e-29
Identity = 66/137 (48.18%), Postives = 94/137 (68.61%), Query Frame = 1 
Query:  577 HSHGLGSS---ADGMLLRLALLLALSVHSVMEGLGLGAKPTKAYNLLFAIGIHKGLAAYALGTALLQSAMPFSKLVGYMIAFALMSPLGILLGSMI--EKTGEDAAGATCVALASGTFLYVALMEVLPPELDSTKHG 972
            HSHG       A  + + + L +ALS HSV+EGLG+GA+   A+ +  AI +HKGLAA+ALG+ L+QSAMP + ++ YM+ F+ MS +GI++G +I  + + + AA   CVALASGTF+YVA+MEV+P E     HG
Sbjct:  151 HSHGXXXXXXXAGSLAVAMVLFIALSFHSVLEGLGIGAQTETAWGVFMAIIMHKGLAAFALGSGLVQSAMPVAHVMLYMVVFSFMSIVGIIVGWIIAADSSEDSAAAGICVALASGTFIYVAVMEVIPQEFPRHSHG 287
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BLAST of mRNA_H-elongata_contig15185.3431.1 vs. uniprot
Match: A0A484EFW1_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484EFW1_BRELC)

HSP 1 Score: 124 bits (311), Expect = 3.580e-29
Identity = 69/137 (50.36%), Postives = 95/137 (69.34%), Query Frame = 1 
Query:  577 HSH-GLGSS---ADGMLLRLALLLALSVHSVMEGLGLGAKPTKAYNLLFAIGIHKGLAAYALGTALLQSAMPFSKLVGYMIAFALMSPLGILLGSMI--EKTGEDAAGATCVALASGTFLYVALMEVLPPELDSTKH 969
            HSH G+ S    A  M + + L +ALS HSV+EGLG+GA+   A+ +  AI +HKGLAA+ALG+ L+QSAMP    + YM+ F+LMS +GI+LG +I  + + + AA   CVALASGTF+YVA+MEV+P E   + H
Sbjct:  156 HSHFGVSSKETKASSMAVAMVLFIALSFHSVLEGLGIGAQTETAWGVFCAIIMHKGLAAFALGSGLVQSAMPVMHAMMYMVVFSLMSIIGIILGWIIAADSSEKSAAAGICVALASGTFIYVAVMEVIPQEFPRSSH 292
[Close]
BLAST of mRNA_H-elongata_contig15185.3431.1 vs. uniprot
Match: A0A1V9YDA1_9STRA (Zinc (Zn2)-Iron (Fe2) Permease (ZIP) Family n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YDA1_9STRA)

HSP 1 Score: 120 bits (301), Expect = 1.950e-28
Identity = 71/175 (40.57%), Postives = 105/175 (60.00%), Query Frame = 1 
Query:  520 VAHEDSRTHHGSGDVVHHVHSHGLGSSADG-MLLRLALLLALSVHSVMEGLGLGAKPTKAYNLLFAIGIHKGLAAYALGTALLQSAMPFSKLVGYMIAFALMSPLGILLGSMIEKTG--EDAAGATCVALASGTFLYVALMEVLPPELDSTKHGWAKMASLFAGFSLSALMG-WI 1032
            V  + +RT HG+     H+H++   S  D   ++   + +ALS HS+MEG+G+GA P  A++LL AI  HK LAA AL   +L  A+P  K+V  ++ FA MSP+G+ +G ++  +   +  A   C ALA GTFLYV  MEVLP EL + KH  AK+A+    F L +++  W+
Sbjct:   82 VPTDKNRTCHGANTA--HMHTNEDASENDNPTVVAATVFVALSFHSLMEGIGIGAAPQNAWSLLLAIVAHKSLAAMALALEMLHHAVPPKKIVAVILVFAAMSPIGVGVGYIVSGSSPADSLASGVCTALAGGTFLYVGAMEVLPEELRNKKHMLAKLAAFVLSFILFSILALWV 254
[Close]
BLAST of mRNA_H-elongata_contig15185.3431.1 vs. uniprot
Match: A0A1V9ZN15_9STRA (Zinc (Zn2)-Iron (Fe2) Permease (ZIP) family n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZN15_9STRA)

HSP 1 Score: 121 bits (304), Expect = 2.270e-28
Identity = 65/138 (47.10%), Postives = 93/138 (67.39%), Query Frame = 1 
Query:  628 LLLALSVHSVMEGLGLGAKPTKAYNLLFAIGIHKGLAAYALGTALLQSAMPFSKLVGYMIAFALMSPLGILLGSMI---EKTGEDAAGATCVALASGTFLYVALMEVLPPELDSTKHGWAKMASLFAGFSL-SALMGW 1029
            L +ALS HSV+EGLG+GA+ T A+ +  AI IHKGLAA+ALGT +L+S +  +K + YM+ F+LMS  GI++G  +   E + + AA   C+ALASGTF+YVA+ME++P E    K    K   L AG+++  A+  W
Sbjct:  168 LFVALSFHSVLEGLGIGAQSTPAWGVFLAIIIHKGLAAFALGTGMLKSQLSKAKFIAYMLLFSLMSIFGIIIGWAVNAAESSEDSAAAGICLALASGTFIYVAVMEIIPQEFAHGKSSPKKTLLLVAGYAIFGAIAKW 305
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig15185.3431.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FLN7_ECTSI7.940e-8645.95Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7FLN8_ECTSI5.780e-8046.74Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A3R7GT88_9STRA6.490e-3150.00Uncharacterized protein n=3 Tax=Phytophthora kerno... [more]
A0A662Y4D4_9STRA8.440e-3144.13Uncharacterized protein n=2 Tax=Nothophytophthora ... [more]
G5ABV8_PHYSP1.120e-2948.23Uncharacterized protein n=4 Tax=Phytophthora TaxID... [more]
D0NNK1_PHYIT1.890e-2942.86Zinc (Zn2)-Iron (Fe2) Permease (ZIP) family n=15 T... [more]
H3GY93_PHYRM3.110e-2948.18Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
A0A484EFW1_BRELC3.580e-2950.36Uncharacterized protein n=1 Tax=Bremia lactucae Ta... [more]
A0A1V9YDA1_9STRA1.950e-2840.57Zinc (Zn2)-Iron (Fe2) Permease (ZIP) Family n=1 Ta... [more]
A0A1V9ZN15_9STRA2.270e-2847.10Zinc (Zn2)-Iron (Fe2) Permease (ZIP) family n=1 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig15185contigH-elongata_contig15185:2855..6271 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score271.9
Seed ortholog evalue4e-70
Seed eggNOG ortholog2880.D7FLN7
KEGG koko:K14709
KEGG TC2.A.5.1,2.A.5.3,2.A.5.6
EggNOG free text desc.zinc ion transmembrane transporter activity
EggNOG OGsKOG1558@1,KOG1558@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000
Hectar predicted targeting categorysignal peptide
Exons5
Model size1048
Cds size1032
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929898.194142-UTR-H-elongata_contig15185:2854..28611622929898.194142-UTR-H-elongata_contig15185:2854..2861Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig15185 2855..2861 -
1691679199.9872975-UTR-H-elongata_contig15185:2854..28611691679199.9872975-UTR-H-elongata_contig15185:2854..2861Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig15185 2855..2861 -
1622929898.2641692-UTR-H-elongata_contig15185:6262..62711622929898.2641692-UTR-H-elongata_contig15185:6262..6271Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig15185 6263..6271 -
1691679200.066766-UTR-H-elongata_contig15185:6262..62711691679200.066766-UTR-H-elongata_contig15185:6262..6271Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig15185 6263..6271 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929898.2057068-CDS-H-elongata_contig15185:2861..31731622929898.2057068-CDS-H-elongata_contig15185:2861..3173Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15185 2862..3173 -
1691679200.0025096-CDS-H-elongata_contig15185:2861..31731691679200.0025096-CDS-H-elongata_contig15185:2861..3173Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15185 2862..3173 -
1622929898.2182462-CDS-H-elongata_contig15185:4413..48531622929898.2182462-CDS-H-elongata_contig15185:4413..4853Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15185 4414..4853 -
1691679200.0205803-CDS-H-elongata_contig15185:4413..48531691679200.0205803-CDS-H-elongata_contig15185:4413..4853Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15185 4414..4853 -
1622929898.2287805-CDS-H-elongata_contig15185:5276..53821622929898.2287805-CDS-H-elongata_contig15185:5276..5382Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15185 5277..5382 -
1691679200.0300243-CDS-H-elongata_contig15185:5276..53821691679200.0300243-CDS-H-elongata_contig15185:5276..5382Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15185 5277..5382 -
1622929898.240927-CDS-H-elongata_contig15185:5819..59031622929898.240927-CDS-H-elongata_contig15185:5819..5903Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15185 5820..5903 -
1691679200.0395925-CDS-H-elongata_contig15185:5819..59031691679200.0395925-CDS-H-elongata_contig15185:5819..5903Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15185 5820..5903 -
1622929898.2514524-CDS-H-elongata_contig15185:6172..62621622929898.2514524-CDS-H-elongata_contig15185:6172..6262Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15185 6173..6262 -
1691679200.0492375-CDS-H-elongata_contig15185:6172..62621691679200.0492375-CDS-H-elongata_contig15185:6172..6262Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15185 6173..6262 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig15185.3431.1prot_H-elongata_contig15185.3431.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig15185 2862..6262 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig15185.3431.1

>prot_H-elongata_contig15185.3431.1 ID=prot_H-elongata_contig15185.3431.1|Name=mRNA_H-elongata_contig15185.3431.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=344bp
MLPESSETLSASWGDAFPWGGFLCSLGFLLILSTDQAVRIAQAGGQHTSS
EGHTLVPTEPPLDAAEHNSPRLLRNDGHHGDGGDYTALVREGARVSPRSL
LDKELTRKRTGNGSQVGGSENGVDQGYNRNGSDLESIDGSVSHRVAPLDG
GSYGGSSLNSGRRSGGGSDFVAHEDSRTHHGSGDVVHHVHSHGLGSSADG
MLLRLALLLALSVHSVMEGLGLGAKPTKAYNLLFAIGIHKGLAAYALGTA
LLQSAMPFSKLVGYMIAFALMSPLGILLGSMIEKTGEDAAGATCVALASG
TFLYVALMEVLPPELDSTKHGWAKMASLFAGFSLSALMGWIVG*
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mRNA from alignment at H-elongata_contig15185:2855..6271-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig15185.3431.1 ID=mRNA_H-elongata_contig15185.3431.1|Name=mRNA_H-elongata_contig15185.3431.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3417bp|location=Sequence derived from alignment at H-elongata_contig15185:2855..6271- (Himanthalia elongata Himel1 dioecious)
CAGGTTCACATGCTTCCCGAGAGCAGCGAGACTCTGAGCGCGTCGTGGGG
GGACGCCTTCCCCTGGGGAGGATTTCTCTGCTCGCTGGGATTCTTGCTGG
TACGAGGATTCACAGCGCTAATAGAAAAAGAAACGTAGGAAAGCATAAAC
GAGTTCCGCCACACATCTACAGGCGCCAAAAAACGAAGCGCCGTGCTCGC
GTGGTTGCTTCCCGTGGTCCCGTATATCGCTCGAACGCGCAAATCCCGGT
GCAAGTGCGAGTGCAAAGAGCCTGGTACGTGAAGTTTTGATCGAAGTCTA
AACGGCATCCAAACACCCTCGCTGCACACGCGTCACGTCTAACGCCGCTC
GCCCCGGCTGCTCGCCAGATTCTCAGCACCGATCAAGCCGTGAGGATCGC
CCAGGCCGGAGGGCAGCACACCAGTAGCGAGGGCCACACTCTTGTGCCAA
CGGTAAGAGCACCGCTGTGACGAACAAGGCAGGGTTGATATTAGACGTCC
TTCGGCGCTTCAGCCATGGGCACACGAAGGCGACGGCTGATAAAGAATAA
ACGAGAAGGCTTCCCCCCACCCTCTCCCCTTTTTGTCTCAAACGCAGAGG
TCTTTCCGGAGATCGTTATTATCATTCGCCCCGCGCGTTCGTCACAACTC
CTTGTTTTGCTAGCTACAAATATTGTGAGTAGTCAACACAGGGCTTACGA
GTGTCTCAATCCCTAGGGAGAGCCGTAGGGCTTCCGCGCCGTTTAAACTG
GTGATGTTTTCGCCTTGCACTTGCGGCGGTCGACCGATGCCATGCGGCGG
GCGGAATTGTTTAGCAAAAATAGAGCGACTCCCGTTTAAAGTCGCCTTCT
TTTTTTTTTCGAACCGCTACGGTACGTTGATTCTGCCAGGAACCACCACT
GGACGCCGCCGAGCATAACTCTCCAAGACTGTTGAGAAACGATGGTCATC
ACGGCGACGGTGGGGACTACACGGCGCTTGTGAGAGAAGGCGCTCGTGGA
TTTGAATCCCGAGCCGGCTACGTCAGCCTAACCCCCGCCCCCCTCCTGGC
GTTCAATCTGTGGTGATATTTCTTGTGGGTTGGGGCCGTCTCTCTCCACC
GTCGTCGTTGTTTTCACCTCTCTGAAGCGGCGCCCAACACCCTTTTTATA
CTATATATATATATATATATATATATACGTTGTTGTTACGAAATTAAATA
GATTGCGGTAGGCGCCTAGAGCCTAATTAAGTGGGCCTAATTTGATAGAT
CGCCATAAGGAGGAGCACCTTCGCCCTAAATAATACCATCCAATTGCAGT
ATATATCTATAATATATATGTAGCTTTTCGAGAGAGGAGTTTGCGCCAGC
GTCATTGCTATACCCCCTCTCGTCTGCCGTGAATTTGGCCTCTTTTCCTC
GGATGGGGAAAAAGGGAGGAGTTTCTCCCCGATCGCTCTTGGACAAGGAG
CTAACGAGAAAGAGAACTGGCAATGGCAGTCAGGTTGGCGGTAGCGAAAA
TGGCGTGGACCAGGGCTACAACCGCAACGGGTCCGACTTGGAATCCATCG
ATGGAAGCGTTAGCCACCGCGTGGCGCCTCTCGACGGTGGCAGTTACGGA
GGAAGCAGTCTCAACAGCGGGAGGCGTTCGGGTGGTGGTTCCGACTTCGT
AGCACACGAAGATTCCCGCACGCATCACGGAAGCGGTGATGTGGTTCATC
ACGTCCATTCACATGGGCTCGGATCCTCCGCTGACGGGATGTTGCTGCGC
CTCGCCTTGCTCCTGGCCTTGTCTGTGCACTCGGTCATGGAGGGACTAGG
CTTGGGGGCAAAGCCTACCAAGGCGTACAACTTGCTCTTCGCGATCGGGA
TTCATAAGGTACGCACGGCGCGATGCACGGCGAGGGAGGGTGAGGGTTGA
CGAGCGGAGCGGAAGAGGTAGACGACGCTCGGCAAAATATTTTGAACTCA
CTCCCCCCTTGTCTTTGGCAGCTATCGTGTGACTTGATCGATTTTTCCTG
CACCAGCCGAGGTTACGATCTACACCGCTGGTGTCACCCTGAACAGTGCC
TCACACAGTACCGCGTGACATATATATTGCGTGCGACACGATCCCGTAGA
CAATACAAGAGCGTAATGAACCCCCTTATTTATAGAAAATAGTAATTTAT
TTGTGTTTTTTTACTAAATCCCCCTCCCCCCCCCAGAGTTATATCCAGCG
TAACTCCTCTGTGATAATCTAGGGCACAGGAGTCTGGTGAGCCGAAGGGG
CGTCCGTTGACGTTGAGAGAGAATACGATAAACGGGTGTATGGTAGGCTT
ATCGAATAAGCAGCTCATGTCTGCCCTCGAAAGAGTCTGACGAAAGGCCC
GCTCGTGAGACGCTTCTTTCCGTCTCGAAACCCCGACAGCATATCCCTTG
CTACTGCTGCTAATTCATTTTTTGTTTTTGTGTTTTAACGTGCGCACGAA
ACAAGAAAACCGTTTGTGCCGCGAGTCAACGGAAGAAAAAGACCAATCTA
CAATGACGTACGACATGCCCGCACTCGATATTTTTGTCCTAGAGCTATAA
AACTGTGTAACGCAACACTCTCCTTCCTTCACATCCGAAAATCTCCCACG
TGAAACTCTCTCGAAATCCAGCTCGCCGAACCGAAGCTCATTTGTCTGCC
CAGCCCCTCTCATAATATCCCAAGGCTATATTGTCTGTATGAGATACCTC
TCGCAATCGAGGCACACGGTACCGGTTCTAGCATTAGTGTCGACGGCACG
ATGACAGCTACTGACGGTGTGGAGGGGGGGGGAGGGTATAATTCGATCCG
TGTGATACGAGTATCTTGGCAGGTTTTTTTAAAAAAAACGGGGACTTGCA
TCCCTGTATGTGCTACACTATACTAAAGGAGAGAACAAGGGGAATGTGTT
CTGATAATTACACACACATATATATATATATAATATAAAGCGGGGTCAAT
TCGCCTGCAGAGTATTTCGTATACATACACGCACAGTACACACACACACA
TCGGGAGCGCACAAACCTGGCGCTGCACCATTGCCCTCGCTCGCGCTTTT
GCTTATGTCCTAATGTCTTCTACCGGAATCTCGCCGTCACCGCGCCAGGG
CCTCGCGGCGTACGCCCTTGGTACCGCGCTCCTTCAAAGCGCGATGCCCT
TCAGCAAGCTGGTTGGGTACATGATCGCCTTCGCGTTGATGTCGCCGCTG
GGGATACTCCTCGGGTCGATGATAGAAAAGACGGGGGAAGATGCGGCCGG
GGCGACGTGCGTGGCGTTAGCCTCTGGGACATTCTTGTACGTGGCGTTGA
TGGAGGTTCTTCCTCCCGAGCTAGATTCAACGAAGCACGGATGGGCGAAG
ATGGCGTCCTTGTTCGCAGGCTTCTCCTTGTCAGCGTTAATGGGATGGAT
CGTGGGTTAGATGTGGG
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Coding sequence (CDS) from alignment at H-elongata_contig15185:2855..6271-

>mRNA_H-elongata_contig15185.3431.1 ID=mRNA_H-elongata_contig15185.3431.1|Name=mRNA_H-elongata_contig15185.3431.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2064bp|location=Sequence derived from alignment at H-elongata_contig15185:2855..6271- (Himanthalia elongata Himel1 dioecious)
ATGCTTCCCGAGAGCAGCGAGACTCTGAGCGCGTCGTGGGGGGACGCCTT
CCCCTGGGGAGGATTTCTCTGCTCGCTGGGATTCTTGCTGATGCTTCCCG
AGAGCAGCGAGACTCTGAGCGCGTCGTGGGGGGACGCCTTCCCCTGGGGA
GGATTTCTCTGCTCGCTGGGATTCTTGCTGATTCTCAGCACCGATCAAGC
CGTGAGGATCGCCCAGGCCGGAGGGCAGCACACCAGTAGCGAGGGCCACA
CTCTTGTGCCAACGATTCTCAGCACCGATCAAGCCGTGAGGATCGCCCAG
GCCGGAGGGCAGCACACCAGTAGCGAGGGCCACACTCTTGTGCCAACGGA
ACCACCACTGGACGCCGCCGAGCATAACTCTCCAAGACTGTTGAGAAACG
ATGGTCATCACGGCGACGGTGGGGACTACACGGCGCTTGTGAGAGAAGGC
GCTCGAACCACCACTGGACGCCGCCGAGCATAACTCTCCAAGACTGTTGA
GAAACGATGGTCATCACGGCGACGGTGGGGACTACACGGCGCTTGTGAGA
GAAGGCGCTCGAGTTTCTCCCCGATCGCTCTTGGACAAGGAGCTAACGAG
AAAGAGAACTGGCAATGGCAGTCAGGTTGGCGGTAGCGAAAATGGCGTGG
ACCAGGGCTACAACCGCAACGGGTCCGACTTGGAATCCATCGATGGAAGC
GTTAGCCACCGCGTGGCGCCTCTCGACGGTGGCAGTTACGGAGGAAGCAG
TCTCAACAGCGGGAGGCGTTCGGGTGGTGGTTCCGACTTCGTAGCACACG
AAGATTCCCGCACGCATCACGGAAGCGGTGATGTGGTTCATCACGTCCAT
TCACATGGGCTCGGATCCTCCGCTGACGGGATGTTGCTGCGCCTCGCCTT
GCTCCTGGCCTTGTCTGTGCACTCGGTCATGGAGGGACTAGGCTTGGGGG
CAAAGCCTACCAAGGCGTACAACTTGCTCTTCGCGATCGGGATTCATAAG
GAGTTTCTCCCCGATCGCTCTTGGACAAGGAGCTAACGAGAAAGAGAACT
GGCAATGGCAGTCAGGTTGGCGGTAGCGAAAATGGCGTGGACCAGGGCTA
CAACCGCAACGGGTCCGACTTGGAATCCATCGATGGAAGCGTTAGCCACC
GCGTGGCGCCTCTCGACGGTGGCAGTTACGGAGGAAGCAGTCTCAACAGC
GGGAGGCGTTCGGGTGGTGGTTCCGACTTCGTAGCACACGAAGATTCCCG
CACGCATCACGGAAGCGGTGATGTGGTTCATCACGTCCATTCACATGGGC
TCGGATCCTCCGCTGACGGGATGTTGCTGCGCCTCGCCTTGCTCCTGGCC
TTGTCTGTGCACTCGGTCATGGAGGGACTAGGCTTGGGGGCAAAGCCTAC
CAAGGCGTACAACTTGCTCTTCGCGATCGGGATTCATAAGGGCCTCGCGG
CGTACGCCCTTGGTACCGCGCTCCTTCAAAGCGCGATGCCCTTCAGCAAG
CTGGTTGGGTACATGATCGCCTTCGCGTTGATGTCGCCGCTGGGGATACT
CCTCGGGTCGATGATAGAAAAGACGGGGGAAGATGCGGCCGGGGCGACGT
GCGTGGCGTTAGCCTCTGGGACATTCTTGTACGTGGCGTTGATGGAGGTT
CTTCCTCCCGAGCTAGATTCAACGAAGCACGGATGGGCGAAGATGGCGTC
CTTGTTCGCAGGCTTCTCCTTGTCAGCGTTAATGGGATGGATCGTGGGTT
AGGGCCTCGCGGCGTACGCCCTTGGTACCGCGCTCCTTCAAAGCGCGATG
CCCTTCAGCAAGCTGGTTGGGTACATGATCGCCTTCGCGTTGATGTCGCC
GCTGGGGATACTCCTCGGGTCGATGATAGAAAAGACGGGGGAAGATGCGG
CCGGGGCGACGTGCGTGGCGTTAGCCTCTGGGACATTCTTGTACGTGGCG
TTGATGGAGGTTCTTCCTCCCGAGCTAGATTCAACGAAGCACGGATGGGC
GAAGATGGCGTCCTTGTTCGCAGGCTTCTCCTTGTCAGCGTTAATGGGAT
GGATCGTGGGTTAG
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