mRNA_H-elongata_contig151841.3430.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig151841.3430.1
Unique NamemRNA_H-elongata_contig151841.3430.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig151841.3430.1 vs. uniprot
Match: A0A6H5KZU9_9PHAE (Protein O-GlcNAc transferase n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KZU9_9PHAE)

HSP 1 Score: 148 bits (373), Expect = 1.120e-39
Identity = 69/79 (87.34%), Postives = 76/79 (96.20%), Query Frame = 1
Query:    1 RFKESQALCEAVYRQRAYRTDNLLLLGAVHFQLRNFSECVMYNQQCIRIDPNFAEAYSNLGNALKELGDVAGAVQFYLK 237
            R+K++QALCE+VYRQ A RTDNLLLLGAVHFQLRNFSEC++YNQQCIRIDPNFAEAYSNLGNALKELGDV GA+QFYLK
Sbjct:   94 RYKDAQALCESVYRQGACRTDNLLLLGAVHFQLRNFSECILYNQQCIRIDPNFAEAYSNLGNALKELGDVGGAIQFYLK 172          
BLAST of mRNA_H-elongata_contig151841.3430.1 vs. uniprot
Match: A0A7S2WWR9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WWR9_9STRA)

HSP 1 Score: 133 bits (334), Expect = 4.570e-38
Identity = 58/79 (73.42%), Postives = 71/79 (89.87%), Query Frame = 1
Query:    1 RFKESQALCEAVYRQRAYRTDNLLLLGAVHFQLRNFSECVMYNQQCIRIDPNFAEAYSNLGNALKELGDVAGAVQFYLK 237
            R++E+  +CE +Y+  A+RT+NLLL+GA+HFQLRNFSEC+ YNQQC+R+ PNFAEAYSNLGNALKELGD AGAVQFYLK
Sbjct:   22 RYREALQMCETIYQVDAFRTENLLLMGAIHFQLRNFSECIFYNQQCVRVQPNFAEAYSNLGNALKELGDCAGAVQFYLK 100          
BLAST of mRNA_H-elongata_contig151841.3430.1 vs. uniprot
Match: A0A7S1C5Z1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C5Z1_9STRA)

HSP 1 Score: 127 bits (319), Expect = 1.450e-35
Identity = 58/77 (75.32%), Postives = 67/77 (87.01%), Query Frame = 1
Query:    1 RFKESQALCEAVYRQRAYRTDNLLLLGAVHFQLRNFSECVMYNQQCIRIDPNFAEAYSNLGNALKELGDVAGAVQFY 231
            R+K++   CE VY+  AYR+DNLLLLGAVHFQLRN+SEC+ YNQQ IRIDPNFAEAY NLGNALKELGD+ G+VQFY
Sbjct:   19 RYKDAHITCEQVYQTDAYRSDNLLLLGAVHFQLRNYSECIFYNQQAIRIDPNFAEAYGNLGNALKELGDIDGSVQFY 95          
BLAST of mRNA_H-elongata_contig151841.3430.1 vs. uniprot
Match: A0A835ZDI7_9STRA (Protein O-GlcNAc transferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDI7_9STRA)

HSP 1 Score: 135 bits (341), Expect = 2.320e-35
Identity = 61/78 (78.21%), Postives = 71/78 (91.03%), Query Frame = 1
Query:    4 FKESQALCEAVYRQRAYRTDNLLLLGAVHFQLRNFSECVMYNQQCIRIDPNFAEAYSNLGNALKELGDVAGAVQFYLK 237
            + ++QA CEA+Y + A+RTDNLLLLGAVHFQLRNFSEC+ YNQQCIR+DP FAEAYSNLGNALKELGD+ GAVQFY+K
Sbjct:   13 YTDAQATCEAIYAEDAHRTDNLLLLGAVHFQLRNFSECIFYNQQCIRVDPGFAEAYSNLGNALKELGDINGAVQFYVK 90          
BLAST of mRNA_H-elongata_contig151841.3430.1 vs. uniprot
Match: A0A7S2B1K3_9STRA (Protein O-GlcNAc transferase n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2B1K3_9STRA)

HSP 1 Score: 123 bits (309), Expect = 4.850e-31
Identity = 56/75 (74.67%), Postives = 66/75 (88.00%), Query Frame = 1
Query:    1 RFKESQALCEAVYRQRAYRTDNLLLLGAVHFQLRNFSECVMYNQQCIRIDPNFAEAYSNLGNALKELGDVAGAVQ 225
            R+KE+  +CE +Y   AYRT+NLLLLGA HFQLRNFSECV YNQQC+R+DPNFAEA+SNLGNALKELGDV GA++
Sbjct:   53 RYKEALDVCEGMYITDAYRTENLLLLGATHFQLRNFSECVFYNQQCVRVDPNFAEAFSNLGNALKELGDVQGAIK 127          
BLAST of mRNA_H-elongata_contig151841.3430.1 vs. uniprot
Match: A0A6G0XEP2_9STRA (Protein O-GlcNAc transferase n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XEP2_9STRA)

HSP 1 Score: 121 bits (304), Expect = 2.300e-30
Identity = 56/78 (71.79%), Postives = 65/78 (83.33%), Query Frame = 1
Query:    1 RFKESQALCEAVYRQRAYRTDNLLLLGAVHFQLRNFSECVMYNQQCIRIDPNFAEAYSNLGNALKELGDVAGAVQFYL 234
            ++KE  A+CE +Y   A RTDNLLLLGA+HFQLRNFSE + YNQQCIRIDP FAEA+ NLGNALKE+GD  GA+QFYL
Sbjct:   43 KYKEGIAICEMLYEADAARTDNLLLLGALHFQLRNFSEAIFYNQQCIRIDPQFAEAFGNLGNALKEIGDSQGAIQFYL 120          
BLAST of mRNA_H-elongata_contig151841.3430.1 vs. uniprot
Match: A0A482RRV3_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RRV3_9ARCH)

HSP 1 Score: 113 bits (283), Expect = 2.720e-30
Identity = 50/78 (64.10%), Postives = 65/78 (83.33%), Query Frame = 1
Query:    4 FKESQALCEAVYRQRAYRTDNLLLLGAVHFQLRNFSECVMYNQQCIRIDPNFAEAYSNLGNALKELGDVAGAVQFYLK 237
            + +  +LC+ +Y   A++TDNL+L+GA HFQLRN+SE V YNQQCI++DP+ AEA+SNLGNALKELGD+ GA QFYLK
Sbjct:   61 YTDCLSLCDKIYEFDAHKTDNLILMGAAHFQLRNYSESVFYNQQCIKVDPHCAEAFSNLGNALKELGDLKGATQFYLK 138          
BLAST of mRNA_H-elongata_contig151841.3430.1 vs. uniprot
Match: A0A067CJ54_SAPPC (Protein O-GlcNAc transferase (Fragment) n=3 Tax=Saprolegnia TaxID=4769 RepID=A0A067CJ54_SAPPC)

HSP 1 Score: 121 bits (303), Expect = 3.130e-30
Identity = 56/79 (70.89%), Postives = 68/79 (86.08%), Query Frame = 1
Query:    1 RFKESQALCEAVYRQRAYRTDNLLLLGAVHFQLRNFSECVMYNQQCIRIDPNFAEAYSNLGNALKELGDVAGAVQFYLK 237
            R+KE  ++CE +Y   A RTDNLLLLGA+HFQLRNFSE + YNQQCIRI+P+FAEA+ NLGNALKE+GD+ GAVQFYL+
Sbjct:   51 RYKEGISICEHLYAADASRTDNLLLLGALHFQLRNFSESIFYNQQCIRIEPHFAEAFGNLGNALKEIGDMNGAVQFYLR 129          
BLAST of mRNA_H-elongata_contig151841.3430.1 vs. uniprot
Match: A0A485L9P8_9STRA (Aste57867_18300 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L9P8_9STRA)

HSP 1 Score: 120 bits (301), Expect = 5.840e-30
Identity = 56/79 (70.89%), Postives = 67/79 (84.81%), Query Frame = 1
Query:    1 RFKESQALCEAVYRQRAYRTDNLLLLGAVHFQLRNFSECVMYNQQCIRIDPNFAEAYSNLGNALKELGDVAGAVQFYLK 237
            ++KE  A+CE +Y   A RTDNLLLLGA+HFQLRNFSE + YNQQCIRI+P+FAEA+ NLGNALKE+GD  GAVQFYL+
Sbjct:   58 KYKEGIAICEQLYDADASRTDNLLLLGALHFQLRNFSEAIFYNQQCIRIEPHFAEAFGNLGNALKEIGDGQGAVQFYLR 136          
BLAST of mRNA_H-elongata_contig151841.3430.1 vs. uniprot
Match: A0A7S3MGN8_9STRA (Protein O-GlcNAc transferase n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MGN8_9STRA)

HSP 1 Score: 119 bits (298), Expect = 1.480e-29
Identity = 55/78 (70.51%), Postives = 64/78 (82.05%), Query Frame = 1
Query:    4 FKESQALCEAVYRQRAYRTDNLLLLGAVHFQLRNFSECVMYNQQCIRIDPNFAEAYSNLGNALKELGDVAGAVQFYLK 237
            + ++    E VY   AYRT+NLLLLGA+HFQLRNFSE + YNQQCIR+D NFAEAYSNLGNALKELGD+ GA +FYLK
Sbjct:   80 YSDALTCSEKVYESDAYRTENLLLLGAIHFQLRNFSESIFYNQQCIRVDANFAEAYSNLGNALKELGDLKGATKFYLK 157          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig151841.3430.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KZU9_9PHAE1.120e-3987.34Protein O-GlcNAc transferase n=2 Tax=Ectocarpus Ta... [more]
A0A7S2WWR9_9STRA4.570e-3873.42Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A7S1C5Z1_9STRA1.450e-3575.32Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A835ZDI7_9STRA2.320e-3578.21Protein O-GlcNAc transferase n=1 Tax=Tribonema min... [more]
A0A7S2B1K3_9STRA4.850e-3174.67Protein O-GlcNAc transferase n=1 Tax=Dictyocha spe... [more]
A0A6G0XEP2_9STRA2.300e-3071.79Protein O-GlcNAc transferase n=1 Tax=Aphanomyces e... [more]
A0A482RRV3_9ARCH2.720e-3064.10Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A067CJ54_SAPPC3.130e-3070.89Protein O-GlcNAc transferase (Fragment) n=3 Tax=Sa... [more]
A0A485L9P8_9STRA5.840e-3070.89Aste57867_18300 protein n=1 Tax=Aphanomyces stella... [more]
A0A7S3MGN8_9STRA1.480e-2970.51Protein O-GlcNAc transferase n=1 Tax=Spumella elon... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig151841contigH-elongata_contig151841:139..1167 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score149.8
Seed ortholog evalue5.2e-34
Seed eggNOG ortholog2880.D7FX68
KEGG rclassRC00005,RC00059
KEGG koko:K09667
KEGG ReactionR09304,R09676
KEGG Pathwayko00514,ko04931,map00514,map04931
GOsGO:0003674,GO:0003824,GO:0006464,GO:0006486,GO:0006493,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009987,GO:0016740,GO:0016757,GO:0019538,GO:0034645,GO:0036211,GO:0043170,GO:0043412,GO:0043413,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0070085,GO:0071704,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576
EggNOG free text desc.protein N-acetylglucosaminyltransferase activity
EggNOG OGsCOG3914@1,KOG4626@2759
EC2.4.1.255
COG Functional cat.O
CAZyGT41
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01003,ko03036
Hectar predicted targeting categoryother localisation
Exons2
Model size237
Cds size237
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929898.0568378-CDS-H-elongata_contig151841:138..2431622929898.0568378-CDS-H-elongata_contig151841:138..243Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig151841 139..243 -
1691679199.9580164-CDS-H-elongata_contig151841:138..2431691679199.9580164-CDS-H-elongata_contig151841:138..243Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig151841 139..243 -
1622929898.0702958-CDS-H-elongata_contig151841:1035..11671622929898.0702958-CDS-H-elongata_contig151841:1035..1167Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig151841 1036..1167 -
1691679199.9766285-CDS-H-elongata_contig151841:1035..11671691679199.9766285-CDS-H-elongata_contig151841:1035..1167Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig151841 1036..1167 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig151841.3430.1prot_H-elongata_contig151841.3430.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig151841 139..1167 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig151841.3430.1

>prot_H-elongata_contig151841.3430.1 ID=prot_H-elongata_contig151841.3430.1|Name=mRNA_H-elongata_contig151841.3430.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=79bp
RFKESQALCEAVYRQRAYRTDNLLLLGAVHFQLRNFSECVMYNQQCIRID
PNFAEAYSNLGNALKELGDVAGAVQFYLK
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mRNA from alignment at H-elongata_contig151841:139..1167-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig151841.3430.1 ID=mRNA_H-elongata_contig151841.3430.1|Name=mRNA_H-elongata_contig151841.3430.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1029bp|location=Sequence derived from alignment at H-elongata_contig151841:139..1167- (Himanthalia elongata Himel1 dioecious)
AGATTCAAGGAATCGCAAGCGTTGTGCGAAGCCGTCTACCGGCAGAGGGC CTACCGCACGGACAACCTTCTTCTCCTCGGGGCGGTTCATTTCCAGCTCA GGAACTTCAGCGAGTGCGTCATGTACAATCAGGTACAGTAACTGGCACTA TTTTTGAAGTACTGAGAGAGACAAATGAGGTACAGCACAGTACAAATTTT GAAGGAGTACATAGAGATATAGTAGCATGTAGCGGTCTCGGTCCGAATCG CCGCATTCTTTTTTAACGTATGTCTGTTGAAACAGAGTCGTGAAAGTCCC GCGAGTGTAGTAGCAGCACGTTAAAGTATTTTACGTGACAGTCCCGCGAG ATGTGCACGAACCGGCACGGTAGCGCCCTGGGGTGACGACTCCTTGCAAA TACGCGAAGCAAACTAAGTTCTGAGTTACTTTTATCGGGTAGTTTATTTT TTTCGTGTTGAAAAAATTGTACAAATCTAGTCATAGGGGCAGGGAGGGAC AGGGCACAAAACGGCACGGGTTACGATCTAGGCTTATCATTGACAGCTAA TATGTCAGATATATCTCTATGCCACATCCAGTCTATGTAATATCCGCTTG CGTGAGGTAAGGCCAAAGTTCGGCTGACGTACGCGTCACCCCCCCCCCTC CTACCTCCCCGATTCTCGCGGTCGAAATCGCGATGTCATGCATAGATGCG CGGCGTGGTGGGTTGTGTTTACACGTGCTCGAGGCTGGATTGATGCGGCG ACCGCGCGCCCGCGAGTGAAGCGGTGTCAATACGGTACTGTACTGTACTG TATCGTTAATCAAAGGTCAAGGCAATGCGGTCCGCTTGTGTATACTGAAA TGAAATGGTTTTCACGCTCTTTTGCCCTTTTCTTCTTCATTTTATTTTTG TTCTGCCTCTCTCTTTTGCCCTAGCAATGCATTCGGATTGATCCGAACTT CGCCGAGGCTTACAGCAACCTGGGCAATGCGCTCAAAGAGCTTGGGGACG TGGCGGGCGCCGTTCAGTTCTACCTCAAG
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Coding sequence (CDS) from alignment at H-elongata_contig151841:139..1167-

>mRNA_H-elongata_contig151841.3430.1 ID=mRNA_H-elongata_contig151841.3430.1|Name=mRNA_H-elongata_contig151841.3430.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=474bp|location=Sequence derived from alignment at H-elongata_contig151841:139..1167- (Himanthalia elongata Himel1 dioecious)
AGATTCAAGGAATCGCAAGCGTTGTGCGAAGCCGTCTACCGGCAGAGGGC
CTACCGCACGGACAACCTTCTTCTCCTCGGGGCGGTTCATTTCCAGCTCA
GGAACTTCAGCGAGTGCGTCATGTACAATCAGAGATTCAAGGAATCGCAA
GCGTTGTGCGAAGCCGTCTACCGGCAGAGGGCCTACCGCACGGACAACCT
TCTTCTCCTCGGGGCGGTTCATTTCCAGCTCAGGAACTTCAGCGAGTGCG
TCATGTACAATCAGCAATGCATTCGGATTGATCCGAACTTCGCCGAGGCT
TACAGCAACCTGGGCAATGCGCTCAAAGAGCTTGGGGACGTGGCGGGCGC
CGTTCAGTTCTACCTCAAGCAATGCATTCGGATTGATCCGAACTTCGCCG
AGGCTTACAGCAACCTGGGCAATGCGCTCAAAGAGCTTGGGGACGTGGCG
GGCGCCGTTCAGTTCTACCTCAAG
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