mRNA_H-elongata_contig151783.3426.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig151783.3426.1
Unique NamemRNA_H-elongata_contig151783.3426.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig151783.3426.1 vs. uniprot
Match: A0A6H5KT91_9PHAE (Glutamine--fructose-6-phosphate transaminase (isomerizing) n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KT91_9PHAE)

HSP 1 Score: 99.4 bits (246), Expect = 9.450e-23
Identity = 48/67 (71.64%), Postives = 54/67 (80.60%), Query Frame = 1 
Query:    1 NKINKKDGEIGVISADSCSLDSSRVEKASQQEDILLSPAPHPHWTIRECLQQPEAIARAMAFGGTLT 201
            N I  KDGEIGVI    CSLD SR+EK+S  EDILLSPAP+ HWTI ECLQQPEAIARA+AFGG ++
Sbjct:  365 NFIAMKDGEIGVIGTGGCSLDVSRMEKSSHTEDILLSPAPYAHWTIMECLQQPEAIARALAFGGRMS 431
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BLAST of mRNA_H-elongata_contig151783.3426.1 vs. uniprot
Match: A0A1Z5KJZ5_FISSO (Glutamine--fructose-6-phosphate transaminase (isomerizing) n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KJZ5_FISSO)

HSP 1 Score: 89.0 bits (219), Expect = 4.230e-19
Identity = 44/66 (66.67%), Postives = 51/66 (77.27%), Query Frame = 1 
Query:    1 NKINKKDGEIGVISADSCSLDSSRVEKASQQEDILLSPAPHPHWTIRECLQQPEAIARAMAFGGTL 198
            N I+ KDGEIGV+ AD  SLD  R +KA  Q D+ LSPAP+PHWT+REC +QPEAIARAM FGG L
Sbjct:  280 NFISMKDGEIGVLHADGRSLDLKRKQKAPDQ-DVKLSPAPYPHWTLRECYEQPEAIARAMGFGGRL 344
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BLAST of mRNA_H-elongata_contig151783.3426.1 vs. uniprot
Match: A0A7S2E9C4_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2E9C4_TRICV)

HSP 1 Score: 88.2 bits (217), Expect = 4.810e-19
Identity = 42/67 (62.69%), Postives = 54/67 (80.60%), Query Frame = 1 
Query:    1 NKINKKDGEIGVISADSCSLDSSRVEKASQQEDILLSPAPHPHWTIRECLQQPEAIARAMAFGGTLT 201
            N I+ KDGEIGV+ AD  +LD SR++KA  QE ++LSP P+PHWTI+ECL+QPEAI RA+ FGG L+
Sbjct:  317 NFISMKDGEIGVLHADGRTLDLSRMQKAPDQE-VVLSPEPYPHWTIKECLEQPEAIGRALKFGGRLS 382
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BLAST of mRNA_H-elongata_contig151783.3426.1 vs. uniprot
Match: A0A4D9CTV3_9STRA (Glutamine--fructose-6-phosphate transaminase (isomerizing) n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CTV3_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 1.470e-18
Identity = 43/67 (64.18%), Postives = 53/67 (79.10%), Query Frame = 1 
Query:    1 NKINKKDGEIGVISADSCSLDSSRVEKASQQEDILLSPAPHPHWTIRECLQQPEAIARAMAFGGTLT 201
            N I  KDGE+GV+ AD  +LD +RV+KA    +ILLSPAP PHWTIRECL+QPEAIARA+ FGG ++
Sbjct:  254 NFIALKDGELGVVRADGSTLDLTRVQKAPDV-NILLSPAPFPHWTIRECLEQPEAIARALGFGGRMS 319
[Close]
BLAST of mRNA_H-elongata_contig151783.3426.1 vs. uniprot
Match: K0TN16_THAOC (Glutamine--fructose-6-phosphate transaminase (isomerizing) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TN16_THAOC)

HSP 1 Score: 86.7 bits (213), Expect = 2.340e-18
Identity = 43/67 (64.18%), Postives = 52/67 (77.61%), Query Frame = 1 
Query:    1 NKINKKDGEIGVISADSCSLDSSRVEKASQQEDILLSPAPHPHWTIRECLQQPEAIARAMAFGGTLT 201
            N I+ KDGEIGV+ AD  SLD SRV+ A  QE + LSPAP+PHWT++E  +QPEAIARA+ FGG LT
Sbjct:   42 NFISMKDGEIGVLHADGSSLDLSRVQVAPDQE-VKLSPAPYPHWTLKETFEQPEAIARALGFGGRLT 107
[Close]
BLAST of mRNA_H-elongata_contig151783.3426.1 vs. uniprot
Match: B8CAH9_THAPS (Glutamine--fructose-6-phosphate transaminase (isomerizing) n=3 Tax=Thalassiosirales TaxID=33847 RepID=B8CAH9_THAPS)

HSP 1 Score: 86.7 bits (213), Expect = 2.750e-18
Identity = 40/67 (59.70%), Postives = 54/67 (80.60%), Query Frame = 1 
Query:    1 NKINKKDGEIGVISADSCSLDSSRVEKASQQEDILLSPAPHPHWTIRECLQQPEAIARAMAFGGTLT 201
            N I+  DGEIGV+ AD  +LD +R+++A  QE + LSPAP+PHWT++EC++QPEAIARA+ FGG LT
Sbjct:  301 NFISMNDGEIGVLRADGTTLDLTRMQEAPDQE-VKLSPAPYPHWTLKECVEQPEAIARALGFGGRLT 366
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BLAST of mRNA_H-elongata_contig151783.3426.1 vs. uniprot
Match: A0A0H5RK65_9EUKA (Glutamine--fructose-6-phosphate transaminase (isomerizing) n=1 Tax=Spongospora subterranea TaxID=70186 RepID=A0A0H5RK65_9EUKA)

HSP 1 Score: 86.3 bits (212), Expect = 3.740e-18
Identity = 39/64 (60.94%), Postives = 51/64 (79.69%), Query Frame = 1 
Query:    7 INKKDGEIGVISADSCSLDSSRVEKASQQEDILLSPAPHPHWTIRECLQQPEAIARAMAFGGTL 198
            I+ +DGE+ VI AD+ SLD SR E A + +DILLSPAP+PHWTIRE  +QPEAI+RA+ +GG +
Sbjct:  253 ISLRDGEVAVIEADAVSLDKSRQESAPKSDDILLSPAPYPHWTIREINEQPEAISRALGYGGRI 316
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BLAST of mRNA_H-elongata_contig151783.3426.1 vs. uniprot
Match: A0A7S4M7P3_9STRA (Glutamine--fructose-6-phosphate transaminase (isomerizing) (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4M7P3_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 4.420e-18
Identity = 39/67 (58.21%), Postives = 52/67 (77.61%), Query Frame = 1 
Query:    1 NKINKKDGEIGVISADSCSLDSSRVEKASQQEDILLSPAPHPHWTIRECLQQPEAIARAMAFGGTLT 201
            N I+ KDGEIGVI AD   LD SR++KA  +E+  ++P P PHWTI+EC++QPEAIARA+ FGG ++
Sbjct:  169 NFISMKDGEIGVIHADGRMLDLSRMQKAPAEEEEKMTPEPFPHWTIKECMEQPEAIARALGFGGRMS 235
[Close]
BLAST of mRNA_H-elongata_contig151783.3426.1 vs. uniprot
Match: A0A7S1ZUI1_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZUI1_TRICV)

HSP 1 Score: 85.1 bits (209), Expect = 5.440e-18
Identity = 40/67 (59.70%), Postives = 53/67 (79.10%), Query Frame = 1 
Query:    1 NKINKKDGEIGVISADSCSLDSSRVEKASQQEDILLSPAPHPHWTIRECLQQPEAIARAMAFGGTLT 201
            N I+ KDGE+GV+ AD  +LD SR++ A  QE ++LSP P+PHWTI+EC +QPEAIARA+ FGG L+
Sbjct:  261 NFISLKDGELGVLHADGRTLDLSRMQTAPDQE-VMLSPDPYPHWTIKECFEQPEAIARALGFGGRLS 326
[Close]
BLAST of mRNA_H-elongata_contig151783.3426.1 vs. uniprot
Match: K0TJ40_THAOC (Glutamine--fructose-6-phosphate transaminase (isomerizing) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TJ40_THAOC)

HSP 1 Score: 84.3 bits (207), Expect = 1.780e-17
Identity = 40/67 (59.70%), Postives = 53/67 (79.10%), Query Frame = 1 
Query:    1 NKINKKDGEIGVISADSCSLDSSRVEKASQQEDILLSPAPHPHWTIRECLQQPEAIARAMAFGGTLT 201
            N I+ KDGEIGV+ AD  +LD +R+++A  QE + LSPAP+PHWT++E  +QPEAIARA+ FGG LT
Sbjct:  303 NFISMKDGEIGVLHADGSTLDLTRMQEAPDQE-VKLSPAPYPHWTLKETFEQPEAIARALGFGGRLT 368
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig151783.3426.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KT91_9PHAE9.450e-2371.64Glutamine--fructose-6-phosphate transaminase (isom... [more]
A0A1Z5KJZ5_FISSO4.230e-1966.67Glutamine--fructose-6-phosphate transaminase (isom... [more]
A0A7S2E9C4_TRICV4.810e-1962.69Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]
A0A4D9CTV3_9STRA1.470e-1864.18Glutamine--fructose-6-phosphate transaminase (isom... [more]
K0TN16_THAOC2.340e-1864.18Glutamine--fructose-6-phosphate transaminase (isom... [more]
B8CAH9_THAPS2.750e-1859.70Glutamine--fructose-6-phosphate transaminase (isom... [more]
A0A0H5RK65_9EUKA3.740e-1860.94Glutamine--fructose-6-phosphate transaminase (isom... [more]
A0A7S4M7P3_9STRA4.420e-1858.21Glutamine--fructose-6-phosphate transaminase (isom... [more]
A0A7S1ZUI1_TRICV5.440e-1859.70Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]
K0TJ40_THAOC1.780e-1759.70Glutamine--fructose-6-phosphate transaminase (isom... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig151783contigH-elongata_contig151783:1266..1466 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score99.0
Seed ortholog evalue9e-19
Seed eggNOG ortholog2880.D8LI63
Preferred nameGFPT1
KEGG rclassRC00010,RC00163,RC02752
KEGG koko:K00820
KEGG ReactionR00768
KEGG Pathwayko00250,ko00520,ko01100,ko01130,ko04931,map00250,map00520,map01100,map01130,map04931
GOsGO:0000271,GO:0003674,GO:0003824,GO:0004360,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0005976,GO:0005979,GO:0006002,GO:0006022,GO:0006023,GO:0006030,GO:0006031,GO:0006037,GO:0006038,GO:0006040,GO:0006041,GO:0006042,GO:0006047,GO:0006048,GO:0006082,GO:0006091,GO:0006109,GO:0006112,GO:0006139,GO:0006464,GO:0006486,GO:0006487,GO:0006520,GO:0006541,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006986,GO:0007154,GO:0007165,GO:0007623,GO:0008150,GO:0008152,GO:0008483,GO:0009058,GO:0009059,GO:0009064,GO:0009100,GO:0009101,GO:0009225,GO:0009226,GO:0009272,GO:0009719,GO:0009725,GO:0009743,GO:0009744,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010033,GO:0010243,GO:0010383,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010675,GO:0010677,GO:0010906,GO:0010962,GO:0015980,GO:0016043,GO:0016051,GO:0016597,GO:0016740,GO:0016769,GO:0017144,GO:0018130,GO:0019222,GO:0019438,GO:0019538,GO:0019637,GO:0019752,GO:0022607,GO:0023052,GO:0030246,GO:0030447,GO:0030448,GO:0030968,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031406,GO:0032501,GO:0032868,GO:0032869,GO:0032870,GO:0032881,GO:0032885,GO:0032922,GO:0033554,GO:0033692,GO:0034097,GO:0034221,GO:0034285,GO:0034620,GO:0034637,GO:0034641,GO:0034645,GO:0034654,GO:0034976,GO:0035690,GO:0035966,GO:0035967,GO:0036094,GO:0036211,GO:0036498,GO:0040007,GO:0042221,GO:0042493,GO:0042546,GO:0043167,GO:0043168,GO:0043170,GO:0043177,GO:0043255,GO:0043412,GO:0043413,GO:0043434,GO:0043436,GO:0043467,GO:0043933,GO:0044036,GO:0044038,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044262,GO:0044264,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0045229,GO:0045719,GO:0045912,GO:0046349,GO:0046483,GO:0048511,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051259,GO:0051260,GO:0051262,GO:0051278,GO:0051289,GO:0051716,GO:0055086,GO:0055114,GO:0060255,GO:0062012,GO:0065003,GO:0065007,GO:0070085,GO:0070548,GO:0070589,GO:0070592,GO:0070873,GO:0070874,GO:0070887,GO:0071310,GO:0071345,GO:0071375,GO:0071417,GO:0071495,GO:0071554,GO:0071704,GO:0071840,GO:0071852,GO:0071966,GO:0080090,GO:1901071,GO:1901073,GO:1901135,GO:1901137,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901652,GO:1901653,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1990823,GO:1990830,GO:2000112,GO:2000113
EggNOG free text desc.glutamine-fructose-6-phosphate transaminase (isomerizing) activity
EggNOG OGsCOG0449@1,KOG1268@2759
EC2.6.1.16
COG Functional cat.M
BiGG ReactioniMM904.YKL104C,iND750.YKL104C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002
Hectar predicted targeting categoryother localisation
Exons1
Model size201
Cds size201
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929897.626272-CDS-H-elongata_contig151783:1265..14661622929897.626272-CDS-H-elongata_contig151783:1265..1466Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig151783 1266..1466 -
1691679199.727453-CDS-H-elongata_contig151783:1265..14661691679199.727453-CDS-H-elongata_contig151783:1265..1466Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig151783 1266..1466 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig151783.3426.1prot_H-elongata_contig151783.3426.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig151783 1266..1466 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig151783.3426.1

>prot_H-elongata_contig151783.3426.1 ID=prot_H-elongata_contig151783.3426.1|Name=mRNA_H-elongata_contig151783.3426.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=67bp
NKINKKDGEIGVISADSCSLDSSRVEKASQQEDILLSPAPHPHWTIRECL
QQPEAIARAMAFGGTLT
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mRNA from alignment at H-elongata_contig151783:1266..1466-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig151783.3426.1 ID=mRNA_H-elongata_contig151783.3426.1|Name=mRNA_H-elongata_contig151783.3426.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=201bp|location=Sequence derived from alignment at H-elongata_contig151783:1266..1466- (Himanthalia elongata Himel1 dioecious)
AATAAAATAAATAAAAAGGACGGAGAGATCGGCGTGATCAGTGCGGACAG
CTGCTCTCTAGACTCCTCCCGGGTGGAAAAGGCGTCGCAGCAGGAGGACA
TACTGCTGTCGCCCGCCCCTCATCCACACTGGACCATTCGGGAGTGCCTT
CAGCAGCCGGAGGCCATCGCACGAGCAATGGCGTTTGGAGGTACATTGAC
T
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Coding sequence (CDS) from alignment at H-elongata_contig151783:1266..1466-

>mRNA_H-elongata_contig151783.3426.1 ID=mRNA_H-elongata_contig151783.3426.1|Name=mRNA_H-elongata_contig151783.3426.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=402bp|location=Sequence derived from alignment at H-elongata_contig151783:1266..1466- (Himanthalia elongata Himel1 dioecious)
AATAAAATAAATAAAAAGGACGGAGAGATCGGCGTGATCAGTGCGGACAG
CTGCTCTCTAGACTCCTCCCGGGTGGAAAAGGCGTCGCAGCAGGAGGACA
TACTGCTGTCGCCCGCCCCTCATCCACACTGGACCATTCGGGAGTGCCTT
CAGCAGCCGGAGGCCATCGCACGAGCAATGGCGTTTGGAGGTACATTGAC
TAATAAAATAAATAAAAAGGACGGAGAGATCGGCGTGATCAGTGCGGACA
GCTGCTCTCTAGACTCCTCCCGGGTGGAAAAGGCGTCGCAGCAGGAGGAC
ATACTGCTGTCGCCCGCCCCTCATCCACACTGGACCATTCGGGAGTGCCT
TCAGCAGCCGGAGGCCATCGCACGAGCAATGGCGTTTGGAGGTACATTGA
CT
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