mRNA_H-elongata_contig151691.3420.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig151691.3420.1
Unique NamemRNA_H-elongata_contig151691.3420.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig151691.3420.1 vs. uniprot
Match: D7G1U6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1U6_ECTSI)

HSP 1 Score: 187 bits (474), Expect = 1.510e-58
Identity = 93/99 (93.94%), Postives = 98/99 (98.99%), Query Frame = 1 
Query:    1 VVAEDAEEEGDAQEIPLPNVKASVLSKVIEFCAHYKEDPMNEIEKPLRSANMYDVVQEWYAKFVEVQQETLFELILAANYMDIKPLLDLTCATVASMIK 297
            ++ EDAEE+GDAQEIPLPNVKASVLSKVIEFCAHYKEDPMNEIEKPL+SANM+DVVQEWYAKFVEVQQETLFELILAANYMDIKPLLDLTCATVASMIK
Sbjct:   50 MIDEDAEEDGDAQEIPLPNVKASVLSKVIEFCAHYKEDPMNEIEKPLKSANMHDVVQEWYAKFVEVQQETLFELILAANYMDIKPLLDLTCATVASMIK 148
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BLAST of mRNA_H-elongata_contig151691.3420.1 vs. uniprot
Match: A0A835Z9K0_9STRA (Skp1 family, dimerization domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9K0_9STRA)

HSP 1 Score: 163 bits (413), Expect = 3.200e-49
Identity = 78/103 (75.73%), Postives = 94/103 (91.26%), Query Frame = 1 
Query:    1 VVAEDAEEEGDAQEIPLPNVKASVLSKVIEFCAHYKEDPMNEIEKPLRSANMYDVVQEWYAKFVEVQQETLFELILAANYMDIKPLLDLTCATVASMIKVRAP 309
            ++ +DA+E+ +AQEIPLPNVK+SVL+K+IEFC HY EDPMNEIEKPL+SANM +VVQ+W+A FV+V+QE LFELILAANYMDIKPLLDLTCATVASMIK + P
Sbjct:   54 MIDDDADEDAEAQEIPLPNVKSSVLTKIIEFCRHYIEDPMNEIEKPLKSANMQEVVQDWFANFVQVEQELLFELILAANYMDIKPLLDLTCATVASMIKGKTP 156
[Close]
BLAST of mRNA_H-elongata_contig151691.3420.1 vs. uniprot
Match: A0A836CN28_9STRA (Skp1 family, dimerization domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CN28_9STRA)

HSP 1 Score: 160 bits (405), Expect = 4.510e-48
Identity = 78/100 (78.00%), Postives = 90/100 (90.00%), Query Frame = 1 
Query:   10 EDAEEEGDAQEIPLPNVKASVLSKVIEFCAHYKEDPMNEIEKPLRSANMYDVVQEWYAKFVEVQQETLFELILAANYMDIKPLLDLTCATVASMIKVRAP 309
            E+ EE+ +AQEIPLPNVK+SVL+KVIEFC HY EDPMNEIEKPL+SANM +VVQ W+A +V+V+QE LFELILAANYMDIKPLLDLTCATVASMIK + P
Sbjct:   52 EELEEDAEAQEIPLPNVKSSVLTKVIEFCRHYVEDPMNEIEKPLKSANMQEVVQNWFATYVQVEQEVLFELILAANYMDIKPLLDLTCATVASMIKGKTP 151
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BLAST of mRNA_H-elongata_contig151691.3420.1 vs. uniprot
Match: F0XYF9_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XYF9_AURAN)

HSP 1 Score: 158 bits (400), Expect = 1.200e-47
Identity = 77/103 (74.76%), Postives = 92/103 (89.32%), Query Frame = 1 
Query:    1 VVAEDAEEEGDAQEIPLPNVKASVLSKVIEFCAHYKEDPMNEIEKPLRSANMYDVVQEWYAKFVEVQQETLFELILAANYMDIKPLLDLTCATVASMIKVRAP 309
            ++ E+A+EE +AQEIPLPNVK+ VL+KVIEFC  Y E+PM+EIEKPL+SANM++VVQEWYA +V+V QE LFELILAANYMDIKPLLDLTCATVASMIK + P
Sbjct:   24 MIPEEADEEEEAQEIPLPNVKSHVLAKVIEFCRRYAEEPMSEIEKPLKSANMHEVVQEWYANYVDVDQELLFELILAANYMDIKPLLDLTCATVASMIKGKTP 126
[Close]
BLAST of mRNA_H-elongata_contig151691.3420.1 vs. uniprot
Match: A0A7S2BM50_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BM50_9STRA)

HSP 1 Score: 159 bits (402), Expect = 1.330e-47
Identity = 76/103 (73.79%), Postives = 91/103 (88.35%), Query Frame = 1 
Query:    1 VVAEDAEEEGDAQEIPLPNVKASVLSKVIEFCAHYKEDPMNEIEKPLRSANMYDVVQEWYAKFVEVQQETLFELILAANYMDIKPLLDLTCATVASMIKVRAP 309
            ++ E+ + E D QEIPLPNVK+ +L KV+EFC HY E+PMNEIEKPL+S+NM++VVQEWYA +VEV+QETLFELILAANYMDIKPLLDLTCATVASMIK + P
Sbjct:   50 MIPEEEDGETDQQEIPLPNVKSQILGKVMEFCKHYCEEPMNEIEKPLKSSNMHEVVQEWYANYVEVEQETLFELILAANYMDIKPLLDLTCATVASMIKGKTP 152
[Close]
BLAST of mRNA_H-elongata_contig151691.3420.1 vs. uniprot
Match: A0A7S2BMM8_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BMM8_9STRA)

HSP 1 Score: 159 bits (402), Expect = 4.760e-47
Identity = 76/103 (73.79%), Postives = 91/103 (88.35%), Query Frame = 1 
Query:    1 VVAEDAEEEGDAQEIPLPNVKASVLSKVIEFCAHYKEDPMNEIEKPLRSANMYDVVQEWYAKFVEVQQETLFELILAANYMDIKPLLDLTCATVASMIKVRAP 309
            ++ E+ + E D QEIPLPNVK+ +L KV+EFC HY E+PMNEIEKPL+S+NM++VVQEWYA +VEV+QETLFELILAANYMDIKPLLDLTCATVASMIK + P
Sbjct:   93 MIPEEEDGETDQQEIPLPNVKSQILGKVMEFCKHYCEEPMNEIEKPLKSSNMHEVVQEWYANYVEVEQETLFELILAANYMDIKPLLDLTCATVASMIKGKTP 195
[Close]
BLAST of mRNA_H-elongata_contig151691.3420.1 vs. uniprot
Match: A0A7S2SQM9_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SQM9_9STRA)

HSP 1 Score: 157 bits (397), Expect = 7.400e-47
Identity = 79/98 (80.61%), Postives = 87/98 (88.78%), Query Frame = 1 
Query:   19 EEEGD-AQEIPLPNVKASVLSKVIEFCAHYKEDPMNEIEKPLRSANMYDVVQEWYAKFVEVQQETLFELILAANYMDIKPLLDLTCATVASMIKVRAP 309
            E+EGD  QEIPLPNVK+SVL KVIEFC HYKEDPM EIEKPL+S+ M +VVQEWYA FV+V+QE LFELILAANYMDIKPLLDLTCATVASMIK + P
Sbjct:   54 EDEGDEVQEIPLPNVKSSVLGKVIEFCRHYKEDPMTEIEKPLKSSTMSEVVQEWYATFVDVEQEVLFELILAANYMDIKPLLDLTCATVASMIKGKTP 151
[Close]
BLAST of mRNA_H-elongata_contig151691.3420.1 vs. uniprot
Match: A0A4D9D5I6_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D5I6_9STRA)

HSP 1 Score: 155 bits (393), Expect = 2.420e-46
Identity = 75/99 (75.76%), Postives = 87/99 (87.88%), Query Frame = 1 
Query:   13 DAEEEGDAQEIPLPNVKASVLSKVIEFCAHYKEDPMNEIEKPLRSANMYDVVQEWYAKFVEVQQETLFELILAANYMDIKPLLDLTCATVASMIKVRAP 309
            D ++  + QEIPLPNVK +VL+KVIEFC H+KEDPMN+IEKPL+SANM++VVQ+WYA FV V QE LFELILAANYMDIKPLLDLTCATVASMIK + P
Sbjct:   43 DDDDSSETQEIPLPNVKNNVLAKVIEFCKHHKEDPMNDIEKPLKSANMHEVVQDWYANFVNVDQELLFELILAANYMDIKPLLDLTCATVASMIKGKTP 141
[Close]
BLAST of mRNA_H-elongata_contig151691.3420.1 vs. uniprot
Match: A0A7S3HQT9_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HQT9_9STRA)

HSP 1 Score: 155 bits (392), Expect = 2.780e-46
Identity = 78/103 (75.73%), Postives = 91/103 (88.35%), Query Frame = 1 
Query:    1 VVAEDAEEEGDAQEIPLPNVKASVLSKVIEFCAHYKEDPMNEIEKPLRSANMYDVVQEWYAKFVEVQQETLFELILAANYMDIKPLLDLTCATVASMIKVRAP 309
            ++ ED  EE +AQEIPLPNVK+++LSKVIEF  HYKE+PMNEIEKPL+SANM +VVQEWY+ F+ V QE LFELILAANYMDIKPLLDLTCATVASMIK ++P
Sbjct:   36 MIDEDQNEE-EAQEIPLPNVKSAILSKVIEFTKHYKEEPMNEIEKPLKSANMAEVVQEWYSNFIAVDQEILFELILAANYMDIKPLLDLTCATVASMIKGKSP 137
[Close]
BLAST of mRNA_H-elongata_contig151691.3420.1 vs. uniprot
Match: A0A7S3JW81_9STRA (Hypothetical protein n=3 Tax=Pelagomonadales TaxID=54409 RepID=A0A7S3JW81_9STRA)

HSP 1 Score: 155 bits (393), Expect = 2.840e-45
Identity = 79/104 (75.96%), Postives = 91/104 (87.50%), Query Frame = 1 
Query:    1 VVAEDAEEEGD-AQEIPLPNVKASVLSKVIEFCAHYKEDPMNEIEKPLRSANMYDVVQEWYAKFVEVQQETLFELILAANYMDIKPLLDLTCATVASMIKVRAP 309
            ++ E+A+E+ D AQEIPLPNVK+ VLSKVIEFC  Y  DPM EIEKPL+SANM++VVQEWYAK+V+V QE LFELILAANYMDIKPLLDLTCATVASMIK + P
Sbjct:  126 MIPEEADEDDDQAQEIPLPNVKSHVLSKVIEFCRQYVNDPMAEIEKPLKSANMHEVVQEWYAKYVDVDQELLFELILAANYMDIKPLLDLTCATVASMIKGKTP 229
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig151691.3420.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G1U6_ECTSI1.510e-5893.94Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835Z9K0_9STRA3.200e-4975.73Skp1 family, dimerization domain-containing protei... [more]
A0A836CN28_9STRA4.510e-4878.00Skp1 family, dimerization domain-containing protei... [more]
F0XYF9_AURAN1.200e-4774.76Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A7S2BM50_9STRA1.330e-4773.79Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S2BMM8_9STRA4.760e-4773.79Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S2SQM9_9STRA7.400e-4780.61Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A4D9D5I6_9STRA2.420e-4675.76Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A7S3HQT9_9STRA2.780e-4675.73Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A7S3JW81_9STRA2.840e-4575.96Hypothetical protein n=3 Tax=Pelagomonadales TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig151691contigH-elongata_contig151691:260..1092 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score186.0
Seed ortholog evalue9.1e-45
Seed eggNOG ortholog2880.D7G1U6
KEGG koko:K03094
KEGG Pathwayko04110,ko04111,ko04114,ko04120,ko04141,ko04310,ko04341,ko04350,ko04710,ko05168,ko05200,map04110,map04111,map04114,map04120,map04141,map04310,map04341,map04350,map04710,map05168,map05200
KEGG ModuleM00379,M00380,M00381,M00382,M00387,M00407,M00411
EggNOG free text desc.modification-dependent protein catabolic process
EggNOG OGsCOG5201@1,KOG1724@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03036,ko04121
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionS-phase kinase-associated protein 1-like
Ec32 orthologEc-07_004070.1
Exons3
Model size327
Cds size327
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig151691.3420.1prot_H-elongata_contig151691.3420.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig151691 260..1092 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929897.1611195-CDS-H-elongata_contig151691:259..3401622929897.1611195-CDS-H-elongata_contig151691:259..340Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig151691 260..340 +
1691679199.481078-CDS-H-elongata_contig151691:259..3401691679199.481078-CDS-H-elongata_contig151691:259..340Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig151691 260..340 +
1622929897.1834657-CDS-H-elongata_contig151691:523..6371622929897.1834657-CDS-H-elongata_contig151691:523..637Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig151691 524..637 +
1691679199.4930918-CDS-H-elongata_contig151691:523..6371691679199.4930918-CDS-H-elongata_contig151691:523..637Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig151691 524..637 +
1622929897.197577-CDS-H-elongata_contig151691:960..10921622929897.197577-CDS-H-elongata_contig151691:960..1092Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig151691 961..1092 +
1691679199.502878-CDS-H-elongata_contig151691:960..10921691679199.502878-CDS-H-elongata_contig151691:960..1092Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig151691 961..1092 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig151691.3420.1

>prot_H-elongata_contig151691.3420.1 ID=prot_H-elongata_contig151691.3420.1|Name=mRNA_H-elongata_contig151691.3420.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=109bp
VVAEDAEEEGDAQEIPLPNVKASVLSKVIEFCAHYKEDPMNEIEKPLRSA
NMYDVVQEWYAKFVEVQQETLFELILAANYMDIKPLLDLTCATVASMIKV
RAPVRALD*
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mRNA from alignment at H-elongata_contig151691:260..1092+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig151691.3420.1 ID=mRNA_H-elongata_contig151691.3420.1|Name=mRNA_H-elongata_contig151691.3420.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=833bp|location=Sequence derived from alignment at H-elongata_contig151691:260..1092+ (Himanthalia elongata Himel1 dioecious)
GTGGTTGCAGAGGATGCCGAAGAAGAGGGGGACGCACAGGAAATTCCCCT
CCCCAACGTTAAGGCATCCGTATTGTCGAAGGTACGAGCGTGCCTCACGA
AGACTTGATAGACAAAGTGGCACGCCCCTTCCAGAGATGCACTGATTGCG
ATTGCCAGTCTCAGCATACGCGGCAGTCCATGCCCCCTGTTAACACAGTG
GACTGTACATGATCACCAGCCATCGATTGCCCTTGTCCTCGGATCAATCC
CATGGTGCCTGCAGGTGATTGAGTTCTGTGCGCACTACAAGGAAGACCCA
ATGAACGAGATCGAAAAGCCTTTGAGGAGCGCCAACATGTACGATGTGGT
GCAGGAATGGTACGCGAAGTTTGTAGAGGTGAGGAAGGCGGTCGAAAGAG
GATTCCATAATTCCAGTCAAGACTAAATATTAGAGTGTCCTTACCGGGGC
AGCGTAACCTTTGCGCGCTGTGCTGTGCTGCACCGCGCTTAGCTTTGAGG
TGAGCGTCCTGTTTTTGGTGTCTTGCTCCCATGTTTTTAGTGTTGGGAAG
GACAAAAAGTCTCGTCAGCCAAACATCTGGAATGTGCTTGGCTCGTTTTT
TTTCTTTCTGGGAGCCGAGGCCCGCAGCTGTTTTTAGAGGCTTTCGTCAC
GAGCTGCACGCCTAAGAATGGGAATGCATGACCACGACTTTGTGTGCACA
GGTGCAGCAAGAGACGTTATTCGAGCTGATCCTAGCGGCGAACTACATGG
ACATCAAGCCCCTCCTTGATCTGACCTGCGCGACCGTTGCGTCTATGATC
AAGGTAAGAGCGCCTGTCCGCGCGTTGGATTAA
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Coding sequence (CDS) from alignment at H-elongata_contig151691:260..1092+

>mRNA_H-elongata_contig151691.3420.1 ID=mRNA_H-elongata_contig151691.3420.1|Name=mRNA_H-elongata_contig151691.3420.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=654bp|location=Sequence derived from alignment at H-elongata_contig151691:260..1092+ (Himanthalia elongata Himel1 dioecious)
GTGGTTGCAGAGGATGCCGAAGAAGAGGGGGACGCACAGGAAATTCCCCT
CCCCAACGTTAAGGCATCCGTATTGTCGAAGGTGGTTGCAGAGGATGCCG
AAGAAGAGGGGGACGCACAGGAAATTCCCCTCCCCAACGTTAAGGCATCC
GTATTGTCGAAGGTGATTGAGTTCTGTGCGCACTACAAGGAAGACCCAAT
GAACGAGATCGAAAAGCCTTTGAGGAGCGCCAACATGTACGATGTGGTGC
AGGAATGGTACGCGAAGTTTGTAGAGGTGATTGAGTTCTGTGCGCACTAC
AAGGAAGACCCAATGAACGAGATCGAAAAGCCTTTGAGGAGCGCCAACAT
GTACGATGTGGTGCAGGAATGGTACGCGAAGTTTGTAGAGGTGCAGCAAG
AGACGTTATTCGAGCTGATCCTAGCGGCGAACTACATGGACATCAAGCCC
CTCCTTGATCTGACCTGCGCGACCGTTGCGTCTATGATCAAGGTAAGAGC
GCCTGTCCGCGCGTTGGATTAAGTGCAGCAAGAGACGTTATTCGAGCTGA
TCCTAGCGGCGAACTACATGGACATCAAGCCCCTCCTTGATCTGACCTGC
GCGACCGTTGCGTCTATGATCAAGGTAAGAGCGCCTGTCCGCGCGTTGGA
TTAA
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