mRNA_H-elongata_contig151599.3414.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig151599.3414.1
Unique NamemRNA_H-elongata_contig151599.3414.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig151599.3414.1 vs. uniprot
Match: D8LSW5_ECTSI (ABC transporter domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSW5_ECTSI)

HSP 1 Score: 71.6 bits (174), Expect = 1.430e-13
Identity = 37/40 (92.50%), Postives = 39/40 (97.50%), Query Frame = 1 
Query:    1 IQVGQRQLLCLARAVLQRSQILVMDEATANIDQYTDSLIQ 120
            + VGQRQLLCLARAVLQRSQILVMDEATANIDQ+TDSLIQ
Sbjct:  221 LSVGQRQLLCLARAVLQRSQILVMDEATANIDQHTDSLIQ 260
[Close]
BLAST of mRNA_H-elongata_contig151599.3414.1 vs. uniprot
Match: A0A6H5JDN6_9PHAE (ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDN6_9PHAE)

HSP 1 Score: 71.6 bits (174), Expect = 1.680e-13
Identity = 37/40 (92.50%), Postives = 39/40 (97.50%), Query Frame = 1 
Query:    1 IQVGQRQLLCLARAVLQRSQILVMDEATANIDQYTDSLIQ 120
            + VGQRQLLCLARAVLQRSQILVMDEATANIDQ+TDSLIQ
Sbjct: 1337 LSVGQRQLLCLARAVLQRSQILVMDEATANIDQHTDSLIQ 1376
[Close]
BLAST of mRNA_H-elongata_contig151599.3414.1 vs. uniprot
Match: D8LSW4_ECTSI (Multidrug resistance-associated protein-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSW4_ECTSI)

HSP 1 Score: 71.6 bits (174), Expect = 1.680e-13
Identity = 37/40 (92.50%), Postives = 39/40 (97.50%), Query Frame = 1 
Query:    1 IQVGQRQLLCLARAVLQRSQILVMDEATANIDQYTDSLIQ 120
            + VGQRQLLCLARAVLQRSQILVMDEATANIDQ+TDSLIQ
Sbjct: 1317 LSVGQRQLLCLARAVLQRSQILVMDEATANIDQHTDSLIQ 1356
[Close]
BLAST of mRNA_H-elongata_contig151599.3414.1 vs. uniprot
Match: D8LSW3_ECTSI (Multidrug resistance-associated protein-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSW3_ECTSI)

HSP 1 Score: 71.6 bits (174), Expect = 1.680e-13
Identity = 37/40 (92.50%), Postives = 39/40 (97.50%), Query Frame = 1 
Query:    1 IQVGQRQLLCLARAVLQRSQILVMDEATANIDQYTDSLIQ 120
            + VGQRQLLCLARAVLQRSQILVMDEATANIDQ+TDSLIQ
Sbjct: 1286 LSVGQRQLLCLARAVLQRSQILVMDEATANIDQHTDSLIQ 1325
[Close]
BLAST of mRNA_H-elongata_contig151599.3414.1 vs. uniprot
Match: A0A6H5JDL0_9PHAE (ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDL0_9PHAE)

HSP 1 Score: 70.5 bits (171), Expect = 4.300e-13
Identity = 36/40 (90.00%), Postives = 39/40 (97.50%), Query Frame = 1 
Query:    1 IQVGQRQLLCLARAVLQRSQILVMDEATANIDQYTDSLIQ 120
            + VGQRQLLCLARAVLQR+QILVMDEATANIDQ+TDSLIQ
Sbjct: 1236 LSVGQRQLLCLARAVLQRTQILVMDEATANIDQHTDSLIQ 1275
[Close]
BLAST of mRNA_H-elongata_contig151599.3414.1 vs. uniprot
Match: A0A835YMC7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMC7_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 1.190e-10
Identity = 32/40 (80.00%), Postives = 37/40 (92.50%), Query Frame = 1 
Query:    1 IQVGQRQLLCLARAVLQRSQILVMDEATANIDQYTDSLIQ 120
            + VGQRQLLCLARA+LQRS++L+MDEATANID  TDSLIQ
Sbjct: 1667 LSVGQRQLLCLARAILQRSKLLLMDEATANIDTGTDSLIQ 1706
[Close]
BLAST of mRNA_H-elongata_contig151599.3414.1 vs. uniprot
Match: UPI00142558AC (multidrug resistance-associated protein 4-like isoform X1 n=4 Tax=Anneissia japonica TaxID=1529436 RepID=UPI00142558AC)

HSP 1 Score: 62.8 bits (151), Expect = 2.220e-10
Identity = 27/38 (71.05%), Postives = 38/38 (100.00%), Query Frame = 1 
Query:    7 VGQRQLLCLARAVLQRSQILVMDEATANIDQYTDSLIQ 120
            VGQRQL+CLARA+L+++++L++DEATAN+DQYTD+LIQ
Sbjct: 1223 VGQRQLICLARAILRQNRVLILDEATANVDQYTDTLIQ 1260
[Close]
BLAST of mRNA_H-elongata_contig151599.3414.1 vs. uniprot
Match: N6UP16_DENPD (ABC transporter domain-containing protein (Fragment) n=2 Tax=Dendroctonus ponderosae TaxID=77166 RepID=N6UP16_DENPD)

HSP 1 Score: 60.5 bits (145), Expect = 2.730e-10
Identity = 27/37 (72.97%), Postives = 36/37 (97.30%), Query Frame = 1 
Query:   10 GQRQLLCLARAVLQRSQILVMDEATANIDQYTDSLIQ 120
            GQRQL+CLARA+++ ++IL+MDEATAN+DQ+TDSLIQ
Sbjct:   33 GQRQLICLARAIVRNNKILIMDEATANVDQHTDSLIQ 69
[Close]
BLAST of mRNA_H-elongata_contig151599.3414.1 vs. uniprot
Match: A0A1Y1MSU2_PHOPY (ABC transporter domain-containing protein (Fragment) n=1 Tax=Photinus pyralis TaxID=7054 RepID=A0A1Y1MSU2_PHOPY)

HSP 1 Score: 58.9 bits (141), Expect = 3.380e-10
Identity = 28/40 (70.00%), Postives = 36/40 (90.00%), Query Frame = 1 
Query:    1 IQVGQRQLLCLARAVLQRSQILVMDEATANIDQYTDSLIQ 120
            + VGQRQL+CLARA+L+ ++IL+MDEATANID  TD+LIQ
Sbjct:   51 VSVGQRQLICLARAILRNNKILIMDEATANIDLETDNLIQ 90
[Close]
BLAST of mRNA_H-elongata_contig151599.3414.1 vs. uniprot
Match: A0A6P6YL70_DERPT (multidrug resistance-associated protein 4-like n=1 Tax=Dermatophagoides pteronyssinus TaxID=6956 RepID=A0A6P6YL70_DERPT)

HSP 1 Score: 62.0 bits (149), Expect = 4.150e-10
Identity = 29/40 (72.50%), Postives = 38/40 (95.00%), Query Frame = 1 
Query:    1 IQVGQRQLLCLARAVLQRSQILVMDEATANIDQYTDSLIQ 120
            + VGQRQL+CLARA+L+R++ILV+DEATAN+D +TDSLIQ
Sbjct: 1189 LSVGQRQLICLARALLRRNKILVLDEATANVDHHTDSLIQ 1228
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig151599.3414.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LSW5_ECTSI1.430e-1392.50ABC transporter domain-containing protein n=1 Tax=... [more]
A0A6H5JDN6_9PHAE1.680e-1392.50ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
D8LSW4_ECTSI1.680e-1392.50Multidrug resistance-associated protein-like prote... [more]
D8LSW3_ECTSI1.680e-1392.50Multidrug resistance-associated protein-like prote... [more]
A0A6H5JDL0_9PHAE4.300e-1390.00ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
A0A835YMC7_9STRA1.190e-1080.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
UPI00142558AC2.220e-1071.05multidrug resistance-associated protein 4-like iso... [more]
N6UP16_DENPD2.730e-1072.97ABC transporter domain-containing protein (Fragmen... [more]
A0A1Y1MSU2_PHOPY3.380e-1070.00ABC transporter domain-containing protein (Fragmen... [more]
A0A6P6YL70_DERPT4.150e-1072.50multidrug resistance-associated protein 4-like n=1... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig151599contigH-elongata_contig151599:1150..1272 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score71.2
Seed ortholog evalue1.2e-10
Seed eggNOG ortholog2880.D8LSW3
KEGG koko:K05673
KEGG TC3.A.1.208.7
KEGG Pathwayko01523,ko02010,ko04024,ko04976,map01523,map02010,map04024,map04976
EggNOG free text desc.ATPase activity, coupled to transmembrane movement of substances
EggNOG OGsCOG1132@1,KOG0054@2759
COG Functional cat.V
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02000
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size123
Cds size123
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929896.4299498-CDS-H-elongata_contig151599:1149..12721622929896.4299498-CDS-H-elongata_contig151599:1149..1272Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig151599 1150..1272 +
1691679199.2209308-CDS-H-elongata_contig151599:1149..12721691679199.2209308-CDS-H-elongata_contig151599:1149..1272Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig151599 1150..1272 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig151599.3414.1prot_H-elongata_contig151599.3414.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig151599 1150..1272 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig151599.3414.1

>prot_H-elongata_contig151599.3414.1 ID=prot_H-elongata_contig151599.3414.1|Name=mRNA_H-elongata_contig151599.3414.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=41bp
IQVGQRQLLCLARAVLQRSQILVMDEATANIDQYTDSLIQV
back to top

mRNA from alignment at H-elongata_contig151599:1150..1272+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig151599.3414.1 ID=mRNA_H-elongata_contig151599.3414.1|Name=mRNA_H-elongata_contig151599.3414.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=123bp|location=Sequence derived from alignment at H-elongata_contig151599:1150..1272+ (Himanthalia elongata Himel1 dioecious)
ATACAGGTCGGTCAACGGCAACTACTCTGCCTCGCCAGAGCCGTCTTGCA
GAGGTCGCAGATCCTTGTCATGGACGAGGCTACGGCCAACATTGACCAAT
ACACTGATTCCCTTATACAGGTG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig151599:1150..1272+

>mRNA_H-elongata_contig151599.3414.1 ID=mRNA_H-elongata_contig151599.3414.1|Name=mRNA_H-elongata_contig151599.3414.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=246bp|location=Sequence derived from alignment at H-elongata_contig151599:1150..1272+ (Himanthalia elongata Himel1 dioecious)
ATACAGGTCGGTCAACGGCAACTACTCTGCCTCGCCAGAGCCGTCTTGCA
GAGGTCGCAGATCCTTGTCATGGACGAGGCTACGGCCAACATTGACCAAT
ACACTGATTCCCTTATACAGGTGATACAGGTCGGTCAACGGCAACTACTC
TGCCTCGCCAGAGCCGTCTTGCAGAGGTCGCAGATCCTTGTCATGGACGA
GGCTACGGCCAACATTGACCAATACACTGATTCCCTTATACAGGTG
back to top