mRNA_H-elongata_contig151458.3408.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig151458.3408.1 vs. uniprot
Match: D7FQG0_ECTSI (Lactamase_B domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQG0_ECTSI) HSP 1 Score: 121 bits (304), Expect = 2.270e-31 Identity = 56/90 (62.22%), Postives = 70/90 (77.78%), Query Frame = 1
Query: 7 RLYCGHGPAVDFADDKIKFYIAHRQEREDQIVEALAEAKDRSLSSLQIVLRVYGFLSIPLLLSAHYNVLQHLSKLCAEGKTKGGCFPCSF 276
RLYCGHGP V+ A +KI++YI HRQERE QI+ AL AK R+LS+LQI +RVYG + +P+ +SAHYNVL HLSKL +EGK G PCS+
Sbjct: 240 RLYCGHGPVVEAAQEKIEYYIKHRQEREAQIINALTAAKGRTLSALQITVRVYGAVPLPIFVSAHYNVLHHLSKLASEGKVVLGWVPCSY 329
BLAST of mRNA_H-elongata_contig151458.3408.1 vs. uniprot
Match: A0A6H5K7T3_9PHAE (Lactamase_B domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K7T3_9PHAE) HSP 1 Score: 119 bits (299), Expect = 6.260e-31 Identity = 56/90 (62.22%), Postives = 68/90 (75.56%), Query Frame = 1
Query: 7 RLYCGHGPAVDFADDKIKFYIAHRQEREDQIVEALAEAKDRSLSSLQIVLRVYGFLSIPLLLSAHYNVLQHLSKLCAEGKTKGGCFPCSF 276
RLYCGHGP V+ A +KI++YI HRQERE QI+ AL AK R+LS+ QI +RVYG L +P+ +SAHYNVL HLSKL EG+ G PCSF
Sbjct: 204 RLYCGHGPVVEAAQEKIEYYIKHRQEREAQIMNALTAAKGRTLSAFQITVRVYGVLPLPIFVSAHYNVLHHLSKLTREGRAVLGWVPCSF 293
BLAST of mRNA_H-elongata_contig151458.3408.1 vs. uniprot
Match: A0A212EVV0_DANPL (Beta-lactamase protein 2 n=2 Tax=Danaus TaxID=13036 RepID=A0A212EVV0_DANPL) HSP 1 Score: 70.9 bits (172), Expect = 1.670e-12 Identity = 36/83 (43.37%), Postives = 50/83 (60.24%), Query Frame = 1
Query: 4 GRLYCGHGPAVDFADDKIKFYIAHRQEREDQIVEALAEAKDRSLSSLQIVLRVYGFLSIPLLLSAHYNVLQHLSKLCAEGKTK 252
G +Y GHG VD +KI++YIAHR +RE+QI+E L D+ L+ + +V +Y L +A YNV HL+KL E K K
Sbjct: 192 GTIYPGHGNVVDDPIEKIQYYIAHRNQREEQILETLRNNSDKQLNEMDLVQLIYTETPEHLWAAAAYNVNHHLTKLTKENKIK 274
BLAST of mRNA_H-elongata_contig151458.3408.1 vs. uniprot
Match: A0A2I4CMS0_9TELE (Endoribonuclease LACTB2 n=1 Tax=Austrofundulus limnaeus TaxID=52670 RepID=A0A2I4CMS0_9TELE) HSP 1 Score: 70.5 bits (171), Expect = 2.200e-12 Identity = 36/79 (45.57%), Postives = 51/79 (64.56%), Query Frame = 1
Query: 10 LYCGHGPAVDFADDKIKFYIAHRQEREDQIVEALAEAKDRSLSSLQIVLRVYGFLSIPLLLSAHYNVLQHLSKLCAEGK 246
+Y GHGP V A KI++YIAHR +RE QI+ A+ + R+ SS+++V VY L L+A+ N++ HL KL EGK
Sbjct: 192 IYPGHGPVVQDAGTKIRYYIAHRDQREQQILAAIQDGAGRAFSSMELVKIVYKDTPEHLHLAANVNLVHHLKKLEKEGK 270
BLAST of mRNA_H-elongata_contig151458.3408.1 vs. uniprot
Match: A0A3P8X6N9_CYNSE (Endoribonuclease LACTB2 n=4 Tax=Cynoglossus semilaevis TaxID=244447 RepID=A0A3P8X6N9_CYNSE) HSP 1 Score: 70.5 bits (171), Expect = 2.410e-12 Identity = 38/86 (44.19%), Postives = 53/86 (61.63%), Query Frame = 1
Query: 1 VGRLYCGHGPAVDFADDKIKFYIAHRQEREDQIVEALAEAKDRSLSSLQIVLRVYGFLSIPLLLSAHYNVLQHLSKLCAEGKTKGG 258
V +Y GHGP V A KI YI+HRQ+RE QI+EA+ +A + L+S+++V VY L +A+ N+L HL KL +GK G
Sbjct: 184 VDLIYPGHGPVVHDAASKITHYISHRQQREQQILEAVLDADGKPLTSMELVKVVYKDTPEHLHQAANVNLLHHLRKLEKDGKISSG 269
BLAST of mRNA_H-elongata_contig151458.3408.1 vs. uniprot
Match: UPI0007DCA31C (endoribonuclease LACTB2 isoform X2 n=2 Tax=Cynoglossus semilaevis TaxID=244447 RepID=UPI0007DCA31C) HSP 1 Score: 70.5 bits (171), Expect = 2.490e-12 Identity = 38/86 (44.19%), Postives = 53/86 (61.63%), Query Frame = 1
Query: 1 VGRLYCGHGPAVDFADDKIKFYIAHRQEREDQIVEALAEAKDRSLSSLQIVLRVYGFLSIPLLLSAHYNVLQHLSKLCAEGKTKGG 258
V +Y GHGP V A KI YI+HRQ+RE QI+EA+ +A + L+S+++V VY L +A+ N+L HL KL +GK G
Sbjct: 188 VDLIYPGHGPVVHDAASKITHYISHRQQREQQILEAVLDADGKPLTSMELVKVVYKDTPEHLHQAANVNLLHHLRKLEKDGKISSG 273
BLAST of mRNA_H-elongata_contig151458.3408.1 vs. uniprot
Match: UPI001FB77B95 (endoribonuclease LACTB2 n=1 Tax=Mugil cephalus TaxID=48193 RepID=UPI001FB77B95) HSP 1 Score: 68.6 bits (166), Expect = 1.130e-11 Identity = 35/82 (42.68%), Postives = 51/82 (62.20%), Query Frame = 1
Query: 1 VGRLYCGHGPAVDFADDKIKFYIAHRQEREDQIVEALAEAKDRSLSSLQIVLRVYGFLSIPLLLSAHYNVLQHLSKLCAEGK 246
G +Y GHGP V A+ KIK YI+HR +RE QI+ A+ + ++ SS+++V VY L +A+ N++ HL KL EGK
Sbjct: 189 AGLIYPGHGPVVQDAEAKIKHYISHRDQREQQILAAIQDGAGKAFSSMELVKIVYKDTPEYLHAAANVNLVHHLKKLEKEGK 270
BLAST of mRNA_H-elongata_contig151458.3408.1 vs. uniprot
Match: A0A3Q3EI09_9LABR (Endoribonuclease LACTB2 n=2 Tax=Labridae TaxID=8247 RepID=A0A3Q3EI09_9LABR) HSP 1 Score: 67.4 bits (163), Expect = 3.030e-11 Identity = 33/79 (41.77%), Postives = 50/79 (63.29%), Query Frame = 1
Query: 10 LYCGHGPAVDFADDKIKFYIAHRQEREDQIVEALAEAKDRSLSSLQIVLRVYGFLSIPLLLSAHYNVLQHLSKLCAEGK 246
+Y GHGP V A KI++YI+HR +RE QI+ A+ + + SS+++V VY + L +A+ N++ HL KL EGK
Sbjct: 193 IYPGHGPVVQDAGSKIRYYISHRDQREQQILAAIQDGAGKPFSSMELVKIVYKDTPVNLHPAANVNLVHHLKKLEKEGK 271
BLAST of mRNA_H-elongata_contig151458.3408.1 vs. uniprot
Match: A0A6P8WDC7_GYMAC (Endoribonuclease LACTB2 n=3 Tax=Notothenioidei TaxID=8205 RepID=A0A6P8WDC7_GYMAC) HSP 1 Score: 67.0 bits (162), Expect = 4.170e-11 Identity = 35/79 (44.30%), Postives = 50/79 (63.29%), Query Frame = 1
Query: 10 LYCGHGPAVDFADDKIKFYIAHRQEREDQIVEALAEAKDRSLSSLQIVLRVYGFLSIPLLLSAHYNVLQHLSKLCAEGK 246
+Y GHGP V A KI+ YI+HR +RE QI+EA+ + + S SS+++V VY L +A+ N++ HL KL EGK
Sbjct: 192 IYPGHGPVVQDAASKIRHYISHRAQREQQILEAIQQGEGASFSSMELVKIVYKDTPEHLHKAANVNLVHHLKKLEKEGK 270
BLAST of mRNA_H-elongata_contig151458.3408.1 vs. uniprot
Match: UPI0014482CDC (endoribonuclease LACTB2 isoform X1 n=2 Tax=Epinephelus lanceolatus TaxID=310571 RepID=UPI0014482CDC) HSP 1 Score: 67.0 bits (162), Expect = 4.170e-11 Identity = 34/79 (43.04%), Postives = 49/79 (62.03%), Query Frame = 1
Query: 10 LYCGHGPAVDFADDKIKFYIAHRQEREDQIVEALAEAKDRSLSSLQIVLRVYGFLSIPLLLSAHYNVLQHLSKLCAEGK 246
+Y GHGP V+ A KI++YI+HR ERE QI+ A+ + SS+++V VY L +A+ N++ HL KL EGK
Sbjct: 192 IYPGHGPVVENAGSKIRYYISHRDEREQQILAAIQAGAGKPFSSMELVKIVYKDTPESLHKAANINLVHHLKKLQKEGK 270 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig151458.3408.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig151458.3408.1 >prot_H-elongata_contig151458.3408.1 ID=prot_H-elongata_contig151458.3408.1|Name=mRNA_H-elongata_contig151458.3408.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=96bp VGRLYCGHGPAVDFADDKIKFYIAHRQEREDQIVEALAEAKDRSLSSLQIback to top mRNA from alignment at H-elongata_contig151458:50..757+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig151458.3408.1 ID=mRNA_H-elongata_contig151458.3408.1|Name=mRNA_H-elongata_contig151458.3408.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=708bp|location=Sequence derived from alignment at H-elongata_contig151458:50..757+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig151458:50..757+ >mRNA_H-elongata_contig151458.3408.1 ID=mRNA_H-elongata_contig151458.3408.1|Name=mRNA_H-elongata_contig151458.3408.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=576bp|location=Sequence derived from alignment at H-elongata_contig151458:50..757+ (Himanthalia elongata Himel1 dioecious)back to top |