mRNA_H-elongata_contig151429.3406.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig151429.3406.1 vs. uniprot
Match: A0A6H5KGH1_9PHAE (SSD domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KGH1_9PHAE) HSP 1 Score: 91.7 bits (226), Expect = 8.620e-20 Identity = 46/79 (58.23%), Postives = 60/79 (75.95%), Query Frame = 1
Query: 7 CLAYLSYVIESSMNAFFRTLGRIVADNPWKTLLVALVVCIIGMSGVSMLEEESRGDKLWVPTGTRSQEDY---VSPYPP 234
CL +S+ IES M+AFF LG +VA +P KT+L+ALV +IG SG + LE+ESRGDKLWVP+GTR+ EDY +S +PP
Sbjct: 15 CLQKMSHAIESRMHAFFSRLGELVAIHPGKTVLLALVGVLIGASGFTTLEQESRGDKLWVPSGTRASEDYATYLSFFPP 93
BLAST of mRNA_H-elongata_contig151429.3406.1 vs. uniprot
Match: UPI00106B5848 (patched domain-containing protein 3-like n=2 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI00106B5848) HSP 1 Score: 67.4 bits (163), Expect = 2.910e-11 Identity = 30/71 (42.25%), Postives = 47/71 (66.20%), Query Frame = 1
Query: 1 RGCLAYLSYVIESSMNAFFRTLGRIVADNPWKTLLVALVVCIIGMSGVSMLEEESRGDKLWVPTGTRSQED 213
+G L +S +I ++ F LGR V +PW T+LV+L++C M+G E+ESRG+KLWVP +++Q+D
Sbjct: 15 KGILQKISRIITGTLENIFYRLGRTVGGSPWITILVSLLLCGACMAGFLRFEQESRGEKLWVPQDSKAQDD 85
BLAST of mRNA_H-elongata_contig151429.3406.1 vs. uniprot
Match: A0A7M6DNI2_9CNID (Uncharacterized protein n=1 Tax=Clytia hemisphaerica TaxID=252671 RepID=A0A7M6DNI2_9CNID) HSP 1 Score: 61.6 bits (148), Expect = 3.140e-9 Identity = 31/82 (37.80%), Postives = 46/82 (56.10%), Query Frame = 1
Query: 1 RGCLAYLSYVIESSMNAFFRTLGRIVADNPWKTLLVALVVCIIGMSGVSMLEEESRGDKLWV-----PTGTRSQEDYVSPYP 231
+GC + I +S+ FF +GRIVA+NPW +L+AL + + M G+ L+ E+RG+K WV P + D V P P
Sbjct: 35 KGCCKTFTDTINASLENFFGAIGRIVANNPWPVILIALTISGLCMVGIIELQTENRGEKNWVSQTSDPVKHKEWVDDVFPIP 116
BLAST of mRNA_H-elongata_contig151429.3406.1 vs. uniprot
Match: A0A7M5WKM5_9CNID (Uncharacterized protein n=1 Tax=Clytia hemisphaerica TaxID=252671 RepID=A0A7M5WKM5_9CNID) HSP 1 Score: 59.7 bits (143), Expect = 1.500e-8 Identity = 30/81 (37.04%), Postives = 46/81 (56.79%), Query Frame = 1
Query: 4 GCLAYLSYVIESSMNAFFRTLGRIVADNPWKTLLVALVVCIIGMSGVSMLEEESRGDKLWV-----PTGTRSQEDYVSPYP 231
C L+ I ++ FF +GR VA+NPWK ++++LV+ ++ M GV L+ E+RG+K WV P + D V P P
Sbjct: 35 SCCRNLTNTINGALENFFAAIGRGVANNPWKVIIISLVLSLLCMVGVLELQSENRGEKNWVSQTSDPIKHKEWIDDVFPIP 115
BLAST of mRNA_H-elongata_contig151429.3406.1 vs. uniprot
Match: A0A7M5XCD6_9CNID (Uncharacterized protein n=1 Tax=Clytia hemisphaerica TaxID=252671 RepID=A0A7M5XCD6_9CNID) HSP 1 Score: 55.5 bits (132), Expect = 4.660e-7 Identity = 33/80 (41.25%), Postives = 46/80 (57.50%), Query Frame = 1
Query: 4 GCLAYLSYVIESSMNAFFRTLGRIVADNPWKTLLVALVVCIIGMSGVSMLEEESRGDKLWVPTGTRSQE--DYVSP-YPP 234
GC + I ++ FF LGR +A+NP K +L+AL V + M GV +E R +KLWV ++S E D+VS YPP
Sbjct: 34 GCCKKCTDRIILALEDFFGGLGRTIANNPIKVILIALAVSFLCMIGVVDFYDEKRQEKLWVAADSKSLEHADWVSDRYPP 113
BLAST of mRNA_H-elongata_contig151429.3406.1 vs. uniprot
Match: A0A813CPV7_9DINO (Ptchd3 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813CPV7_9DINO) HSP 1 Score: 55.5 bits (132), Expect = 4.720e-7 Identity = 30/73 (41.10%), Postives = 45/73 (61.64%), Query Frame = 1
Query: 10 LAYLSYVIESSMNAFFRTLGRIVADNPWKTLLVALVVCIIGMSGVSMLEEESRGDKLWVPTGTRSQE--DYVS 222
LA + VIE + +FF +GR+V +P K+L+ +++ + G SML E+R +K WVPTG + E DYVS
Sbjct: 344 LASTNTVIERVLESFFEKVGRVVGTHPIKSLVGSVLFVVACGGGFSMLTNETRPEKQWVPTGAIALEHNDYVS 416
BLAST of mRNA_H-elongata_contig151429.3406.1 vs. uniprot
Match: A0A1X6PJZ3_PORUM (SSD domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6PJZ3_PORUM) HSP 1 Score: 52.8 bits (125), Expect = 4.170e-6 Identity = 28/70 (40.00%), Postives = 43/70 (61.43%), Query Frame = 1
Query: 4 GCLAYLSYVIESSMNAFFRTLGRIVADNPWKTLLVALVVCIIGMSGVSMLEEESRGDKLWVPTGTRSQED 213
G L ++ I++++ +FF LG ++A P L+ AL++ +GV L ESRG+KLWVP GTR+ D
Sbjct: 56 GLLGRVTGAIDNALRSFFFRLGYLIAGRPVLFLIGALLLTGGLTAGVVRLRTESRGNKLWVPQGTRALRD 125
BLAST of mRNA_H-elongata_contig151429.3406.1 vs. uniprot
Match: A0A812L909_9DINO (Ptchd3 protein n=5 Tax=Symbiodinium TaxID=2949 RepID=A0A812L909_9DINO) HSP 1 Score: 52.4 bits (124), Expect = 5.680e-6 Identity = 27/66 (40.91%), Postives = 41/66 (62.12%), Query Frame = 1
Query: 28 VIESSMNAFFRTLGRIVADNPWKTLLVALVVCIIGMSGVSMLEEESRGDKLWVPTGTRSQE--DYV 219
VIE + +FF +GR+V +P K+L+ +++ + G SML E+R +K WVPTG + E DYV
Sbjct: 37 VIERVLESFFEKVGRVVGTHPIKSLVGSVLFVVACGGGFSMLTNETRPEKQWVPTGAIALEHNDYV 102 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig151429.3406.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig151429.3406.1 >prot_H-elongata_contig151429.3406.1 ID=prot_H-elongata_contig151429.3406.1|Name=mRNA_H-elongata_contig151429.3406.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=81bp RGCLAYLSYVIESSMNAFFRTLGRIVADNPWKTLLVALVVCIIGMSGVSMback to top mRNA from alignment at H-elongata_contig151429:576..818- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig151429.3406.1 ID=mRNA_H-elongata_contig151429.3406.1|Name=mRNA_H-elongata_contig151429.3406.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=243bp|location=Sequence derived from alignment at H-elongata_contig151429:576..818- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig151429:576..818- >mRNA_H-elongata_contig151429.3406.1 ID=mRNA_H-elongata_contig151429.3406.1|Name=mRNA_H-elongata_contig151429.3406.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=486bp|location=Sequence derived from alignment at H-elongata_contig151429:576..818- (Himanthalia elongata Himel1 dioecious)back to top |