mRNA_H-elongata_contig151345.3402.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig151345.3402.1
Unique NamemRNA_H-elongata_contig151345.3402.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig151345.3402.1 vs. uniprot
Match: A0A6H5J7R4_9PHAE (SCD domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7R4_9PHAE)

HSP 1 Score: 100 bits (248), Expect = 3.610e-22
Identity = 62/112 (55.36%), Postives = 81/112 (72.32%), Query Frame = 1 
Query:    1 LQLGLGVAEGLADLYAKLAVGQRQLDVATASPASKGGNKGKEKAQSKARKTKSLQDQVERISNAVAGLTEVSEQVFSRVTQKRYRDVSTPVRTTVLEGLCAVMLALPEVYVE 336
            +++GLGVAE LA L+ KL + +RQL+ A +S A KGG K   KA  K+RK + L+ QVERI +A   LT VS+ VFS++TQKRYRDVS  +R+  LEGL  +MLALPE YV+
Sbjct:  148 MEVGLGVAEDLAGLHEKLGLSERQLEAAKSS-AGKGGGK---KAAEKSRKIQGLESQVERILSATETLTTVSDLVFSKITQKRYRDVSPLIRSIALEGLSKIMLALPEFYVQ 255
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BLAST of mRNA_H-elongata_contig151345.3402.1 vs. uniprot
Match: D7G0R2_ECTSI (Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0R2_ECTSI)

HSP 1 Score: 98.2 bits (243), Expect = 1.550e-21
Identity = 61/112 (54.46%), Postives = 80/112 (71.43%), Query Frame = 1 
Query:    1 LQLGLGVAEGLADLYAKLAVGQRQLDVATASPASKGGNKGKEKAQSKARKTKSLQDQVERISNAVAGLTEVSEQVFSRVTQKRYRDVSTPVRTTVLEGLCAVMLALPEVYVE 336
            +++GLGVAE LA L  KL + +RQL+ A +S A KGG K   KA  K+RK + L+ QVER+ +A   LT VS+ VFS++TQKRYRDVS  +R+  LEGL  +MLALPE YV+
Sbjct:  370 MEMGLGVAEELAGLREKLGLSERQLEAAKSS-AGKGGGK---KAAEKSRKIQGLESQVERVFSATETLTTVSDLVFSKITQKRYRDVSPLIRSIALEGLSKIMLALPEFYVQ 477
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig151345.3402.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5J7R4_9PHAE3.610e-2255.36SCD domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7G0R2_ECTSI1.550e-2154.46Sister chromatid cohesion complex Cohesin, subunit... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig151345contigH-elongata_contig151345:399..1029 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score102.8
Seed ortholog evalue1.1e-19
Seed eggNOG ortholog2880.D7G0R2
Preferred nameIRR1
KEGG koko:K06671
KEGG Pathwayko04110,ko04111,ko04113,map04110,map04111,map04113
GOsGO:0000003,GO:0000070,GO:0000228,GO:0000278,GO:0000280,GO:0000785,GO:0000790,GO:0000793,GO:0000794,GO:0000798,GO:0000819,GO:0003674,GO:0003682,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005737,GO:0005829,GO:0006996,GO:0007049,GO:0007059,GO:0007062,GO:0007064,GO:0007127,GO:0007129,GO:0007135,GO:0008150,GO:0008278,GO:0008608,GO:0009987,GO:0010789,GO:0016043,GO:0022402,GO:0022414,GO:0022607,GO:0030892,GO:0030893,GO:0030999,GO:0031619,GO:0031974,GO:0031981,GO:0032991,GO:0034990,GO:0034991,GO:0043060,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0045132,GO:0045143,GO:0045144,GO:0048285,GO:0050000,GO:0051177,GO:0051179,GO:0051234,GO:0051276,GO:0051303,GO:0051310,GO:0051311,GO:0051316,GO:0051321,GO:0051455,GO:0051640,GO:0051641,GO:0051649,GO:0051656,GO:0061982,GO:0061983,GO:0070013,GO:0070192,GO:0071840,GO:0098813,GO:0140013,GO:0140014,GO:1903046,GO:1903047
EggNOG free text desc.chromosome segregation
EggNOG OGsCOG5537@1,KOG2011@2759
COG Functional cat.D
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036
Hectar predicted targeting categoryother localisation
Exons2
Model size345
Cds size345
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929894.9117045-CDS-H-elongata_contig151345:398..5211622929894.9117045-CDS-H-elongata_contig151345:398..521Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig151345 399..521 -
1691679198.747814-CDS-H-elongata_contig151345:398..5211691679198.747814-CDS-H-elongata_contig151345:398..521Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig151345 399..521 -
1622929894.9345303-CDS-H-elongata_contig151345:807..10291622929894.9345303-CDS-H-elongata_contig151345:807..1029Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig151345 808..1029 -
1691679198.759233-CDS-H-elongata_contig151345:807..10291691679198.759233-CDS-H-elongata_contig151345:807..1029Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig151345 808..1029 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig151345.3402.1prot_H-elongata_contig151345.3402.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig151345 399..1029 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig151345.3402.1

>prot_H-elongata_contig151345.3402.1 ID=prot_H-elongata_contig151345.3402.1|Name=mRNA_H-elongata_contig151345.3402.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=115bp
LQLGLGVAEGLADLYAKLAVGQRQLDVATASPASKGGNKGKEKAQSKARK
TKSLQDQVERISNAVAGLTEVSEQVFSRVTQKRYRDVSTPVRTTVLEGLC
AVMLALPEVYVEVRM
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mRNA from alignment at H-elongata_contig151345:399..1029-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig151345.3402.1 ID=mRNA_H-elongata_contig151345.3402.1|Name=mRNA_H-elongata_contig151345.3402.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=631bp|location=Sequence derived from alignment at H-elongata_contig151345:399..1029- (Himanthalia elongata Himel1 dioecious)
CTGCAGCTGGGGCTTGGGGTGGCGGAGGGGCTCGCGGACCTCTACGCCAA
GCTGGCCGTCGGACAAAGGCAGCTCGATGTCGCTACGGCATCCCCTGCCA
GCAAAGGCGGGAACAAGGGGAAGGAGAAGGCCCAGTCAAAGGCGCGGAAG
ACCAAGAGCCTGCAGGATCAGGTCGAGAGGATCTCGAATGCCGTGGCAGG
GTTGACGGAGGTGTCCGAACAGGTGGGTTTGTATCGTTGGTTGCTTGGTT
GTCGGTAACCAGAGCCTTTGTGTGTTTATCTCTCAATAATATGTAGTAAG
TTTTCTGTGTGCTCTAGTGTAGGTATTATGTAGAGTTCTCTTTCTCTCTA
ACCGGTTGCAACCCCCCCCCCCATTCGTAATACCGCCTTCATAATCCCGA
TGAAACCCCGGCTTCGAGCGCTAGGTCAGGCGCAACTCTTGTCTAACAGC
TAAGGCATCCCAAACCCTCTTCTTCCTTATGGGCACCCGACGAATGAACG
CCTCGCAGGTGTTTTCCAGGGTGACCCAAAAGAGGTACAGGGATGTATCA
ACCCCCGTGCGCACGACGGTGCTGGAGGGCCTCTGTGCCGTCATGCTGGC
GCTGCCCGAAGTGTACGTGGAGGTACGTATG
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Coding sequence (CDS) from alignment at H-elongata_contig151345:399..1029-

>mRNA_H-elongata_contig151345.3402.1 ID=mRNA_H-elongata_contig151345.3402.1|Name=mRNA_H-elongata_contig151345.3402.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=690bp|location=Sequence derived from alignment at H-elongata_contig151345:399..1029- (Himanthalia elongata Himel1 dioecious)
CTGCAGCTGGGGCTTGGGGTGGCGGAGGGGCTCGCGGACCTCTACGCCAA
GCTGGCCGTCGGACAAAGGCAGCTCGATGTCGCTACGGCATCCCCTGCCA
GCAAAGGCGGGAACAAGGGGAAGGAGAAGGCCCAGTCAAAGGCGCGGAAG
ACCAAGAGCCTGCAGGATCAGGTCGAGAGGATCTCGAATGCCGTGGCAGG
GTTGACGGAGGTGTCCGAACAGCTGCAGCTGGGGCTTGGGGTGGCGGAGG
GGCTCGCGGACCTCTACGCCAAGCTGGCCGTCGGACAAAGGCAGCTCGAT
GTCGCTACGGCATCCCCTGCCAGCAAAGGCGGGAACAAGGGGAAGGAGAA
GGCCCAGTCAAAGGCGCGGAAGACCAAGAGCCTGCAGGATCAGGTCGAGA
GGATCTCGAATGCCGTGGCAGGGTTGACGGAGGTGTCCGAACAGGTGTTT
TCCAGGGTGACCCAAAAGAGGTACAGGGATGTATCAACCCCCGTGCGCAC
GACGGTGCTGGAGGGCCTCTGTGCCGTCATGCTGGCGCTGCCCGAAGTGT
ACGTGGAGGTACGTATGGTGTTTTCCAGGGTGACCCAAAAGAGGTACAGG
GATGTATCAACCCCCGTGCGCACGACGGTGCTGGAGGGCCTCTGTGCCGT
CATGCTGGCGCTGCCCGAAGTGTACGTGGAGGTACGTATG
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