mRNA_H-elongata_contig151266.3399.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig151266.3399.1
Unique NamemRNA_H-elongata_contig151266.3399.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig151266.3399.1 vs. uniprot
Match: A0A6H5JR04_9PHAE (Small nuclear ribonucleoprotein Sm D1 n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JR04_9PHAE)

HSP 1 Score: 120 bits (302), Expect = 1.050e-33
Identity = 56/60 (93.33%), Postives = 58/60 (96.67%), Query Frame = 1 
Query:    1 QVTPKGKNPTTYDSLSIRGNNIRCYILPDNLNLDQLLIDDTPKQKPGRVKDGGRGRGRGM 180
            +VTPKGKNPTTYDSLSIRGNNIRCYILPDNLNLDQLLIDD PKQKPG+VKDG RGRGRGM
Sbjct:   44 KVTPKGKNPTTYDSLSIRGNNIRCYILPDNLNLDQLLIDDAPKQKPGKVKDGARGRGRGM 103
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BLAST of mRNA_H-elongata_contig151266.3399.1 vs. uniprot
Match: A0A7S2FU32_9STRA (Small nuclear ribonucleoprotein Sm D1 (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FU32_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 1.450e-19
Identity = 41/59 (69.49%), Postives = 47/59 (79.66%), Query Frame = 1 
Query:    1 QVTPKGKNPTTYDSLSIRGNNIRCYILPDNLNLDQLLIDDTPKQKPGRVKDGGRGRGRG 177
            +VT KGKN   YD+LSIRGNNIR Y+LPD++NLD LLIDD PKQK  +V  GGRG GRG
Sbjct:   65 KVTVKGKNTVNYDTLSIRGNNIRYYLLPDSINLDALLIDDAPKQKAPKVAAGGRGPGRG 123
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BLAST of mRNA_H-elongata_contig151266.3399.1 vs. uniprot
Match: A0A835YYQ8_9STRA (Small nuclear ribonucleoprotein Sm D1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYQ8_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 1.850e-19
Identity = 39/52 (75.00%), Postives = 43/52 (82.69%), Query Frame = 1 
Query:    1 QVTPKGKNPTTYDSLSIRGNNIRCYILPDNLNLDQLLIDDTPKQKPGRVKDG 156
            +VTPKG+N    D+LSIRGNNIRCYILPDN+NLDQLLIDD PK KPG  K G
Sbjct:   44 KVTPKGRNTQDCDTLSIRGNNIRCYILPDNINLDQLLIDDAPKAKPGIPKAG 95
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BLAST of mRNA_H-elongata_contig151266.3399.1 vs. uniprot
Match: T0RK40_SAPDV (Small nuclear ribonucleoprotein Sm D1 n=5 Tax=Saprolegniaceae TaxID=4764 RepID=T0RK40_SAPDV)

HSP 1 Score: 83.6 bits (205), Expect = 4.370e-19
Identity = 38/45 (84.44%), Postives = 42/45 (93.33%), Query Frame = 1 
Query:    1 QVTPKGKNPTTYDSLSIRGNNIRCYILPDNLNLDQLLIDDTPKQK 135
            ++T KGKNPT+ DSLSIRGNNIRCYILPD+LNLD LLIDDTPKQK
Sbjct:   44 KMTVKGKNPTSLDSLSIRGNNIRCYILPDSLNLDTLLIDDTPKQK 88
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BLAST of mRNA_H-elongata_contig151266.3399.1 vs. uniprot
Match: A0A7S2SJR6_9STRA (Small nuclear ribonucleoprotein Sm D1 n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SJR6_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 3.280e-18
Identity = 39/52 (75.00%), Postives = 43/52 (82.69%), Query Frame = 1 
Query:    1 QVTPKGKNPTTYDSLSIRGNNIRCYILPDNLNLDQLLIDDTPKQKPGRVKDG 156
            ++T KGKN   YDSLSIRGNNIR YILPDNLNLD LLIDDTPK KP +V+ G
Sbjct:   66 KLTVKGKNTVHYDSLSIRGNNIRYYILPDNLNLDTLLIDDTPKAKPPKVQTG 117
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BLAST of mRNA_H-elongata_contig151266.3399.1 vs. uniprot
Match: A0A482SBF9_9ARCH (Sm domain-containing protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SBF9_9ARCH)

HSP 1 Score: 77.8 bits (190), Expect = 2.450e-17
Identity = 40/61 (65.57%), Postives = 46/61 (75.41%), Query Frame = 1 
Query:    1 QVTPKGKNPTTYDSLSIRGNNIRCYILPDNLNLDQLLIDDTPKQKPGRVKD---GGRGRGR 174
            +VT KGKNP  +D LSIRGNNIR YILPD+LNLD LL+DDTPK    R++    GGRG GR
Sbjct:    9 KVTLKGKNPVHHDFLSIRGNNIRYYILPDSLNLDTLLVDDTPKHAVSRIQPKQTGGRGGGR 69
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BLAST of mRNA_H-elongata_contig151266.3399.1 vs. uniprot
Match: K3WSY3_GLOUD (Small nuclear ribonucleoprotein Sm D1 n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WSY3_GLOUD)

HSP 1 Score: 79.0 bits (193), Expect = 4.920e-17
Identity = 40/59 (67.80%), Postives = 47/59 (79.66%), Query Frame = 1 
Query:    1 QVTPKGKNPTTYDSLSIRGNNIRCYILPDNLNLDQLLIDDTPKQK--PGRVKDGGRGRG 171
            ++T KGKNP + DSLSIRGNNIR YILPD+LNLD LLI+DTP++K   G    GGRGRG
Sbjct:   44 KMTVKGKNPVSLDSLSIRGNNIRYYILPDSLNLDTLLIEDTPREKVKAGAPAAGGRGRG 102
[Close]
BLAST of mRNA_H-elongata_contig151266.3399.1 vs. uniprot
Match: A0A7R9W4G1_9STRA (Small nuclear ribonucleoprotein Sm D1 (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9W4G1_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 7.120e-17
Identity = 37/61 (60.66%), Postives = 48/61 (78.69%), Query Frame = 1 
Query:    1 QVTPKGKNPTTYDSLSIRGNNIRCYILPDNLNLDQLLIDDTPKQ--KPGRVKDGGRGRGRG 177
            +VT +GKNP ++ +LS+RG+ +RC+ILPD+LNLD LL+DDTPKQ  K G    GG GRGRG
Sbjct:   63 KVTVRGKNPVSHATLSVRGSTVRCWILPDSLNLDALLVDDTPKQVQKAGTQAPGGMGRGRG 123
[Close]
BLAST of mRNA_H-elongata_contig151266.3399.1 vs. uniprot
Match: A0A7S2V5U0_9STRA (Small nuclear ribonucleoprotein Sm D1 n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V5U0_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 7.610e-17
Identity = 39/57 (68.42%), Postives = 45/57 (78.95%), Query Frame = 1 
Query:    1 QVTPKGKNPTTYDSLSIRGNNIRCYILPDNLNLDQLLIDDTPKQK--PGRVKDGGRG 165
            ++T K KNP + ++LSIRGNNIR Y+LPDNLNLD LLIDDTPKQK  PG    GGRG
Sbjct:   44 KMTVKQKNPVSLETLSIRGNNIRYYLLPDNLNLDTLLIDDTPKQKVRPGVAMRGGRG 100
[Close]
BLAST of mRNA_H-elongata_contig151266.3399.1 vs. uniprot
Match: A0A024TLD1_9STRA (Small nuclear ribonucleoprotein Sm D1 n=4 Tax=Aphanomyces TaxID=100860 RepID=A0A024TLD1_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 9.110e-17
Identity = 36/45 (80.00%), Postives = 41/45 (91.11%), Query Frame = 1 
Query:    1 QVTPKGKNPTTYDSLSIRGNNIRCYILPDNLNLDQLLIDDTPKQK 135
            ++T KGKNPT+ DSLSIRGNNIR YILPD+LNLD LLIDD+PKQK
Sbjct:   44 KMTVKGKNPTSLDSLSIRGNNIRYYILPDSLNLDTLLIDDSPKQK 88
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig151266.3399.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JR04_9PHAE1.050e-3393.33Small nuclear ribonucleoprotein Sm D1 n=2 Tax=Ecto... [more]
A0A7S2FU32_9STRA1.450e-1969.49Small nuclear ribonucleoprotein Sm D1 (Fragment) n... [more]
A0A835YYQ8_9STRA1.850e-1975.00Small nuclear ribonucleoprotein Sm D1 n=1 Tax=Trib... [more]
T0RK40_SAPDV4.370e-1984.44Small nuclear ribonucleoprotein Sm D1 n=5 Tax=Sapr... [more]
A0A7S2SJR6_9STRA3.280e-1875.00Small nuclear ribonucleoprotein Sm D1 n=1 Tax=Rhiz... [more]
A0A482SBF9_9ARCH2.450e-1765.57Sm domain-containing protein (Fragment) n=1 Tax=ar... [more]
K3WSY3_GLOUD4.920e-1767.80Small nuclear ribonucleoprotein Sm D1 n=1 Tax=Glob... [more]
A0A7R9W4G1_9STRA7.120e-1760.66Small nuclear ribonucleoprotein Sm D1 (Fragment) n... [more]
A0A7S2V5U0_9STRA7.610e-1768.42Small nuclear ribonucleoprotein Sm D1 n=1 Tax=Fibr... [more]
A0A024TLD1_9STRA9.110e-1780.00Small nuclear ribonucleoprotein Sm D1 n=4 Tax=Apha... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig151266contigH-elongata_contig151266:99..332 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score117.1
Seed ortholog evalue3.7e-24
Seed eggNOG ortholog2880.D7FT15
Preferred nameSNRPD1
KEGG rclassRC00046,RC00150,RC00180
KEGG koko:K00505,ko:K10645,ko:K11087
KEGG ReactionR00731,R02078,R02363,R02383,R04693,R04884
KEGG Pathwayko00350,ko00950,ko00965,ko01100,ko01110,ko03040,ko04916,ko05322,map00350,map00950,map00965,map01100,map01110,map03040,map04916,map05322
KEGG ModuleM00042,M00351,M00352,M00354,M00355,M00398
GOsGO:0000243,GO:0000245,GO:0000375,GO:0000377,GO:0000387,GO:0000395,GO:0000398,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005682,GO:0005684,GO:0005685,GO:0005686,GO:0005687,GO:0005689,GO:0005730,GO:0005737,GO:0005773,GO:0005774,GO:0005829,GO:0006139,GO:0006376,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0006810,GO:0006913,GO:0008150,GO:0008152,GO:0008380,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010605,GO:0010608,GO:0010629,GO:0016020,GO:0016043,GO:0016070,GO:0016071,GO:0016441,GO:0016458,GO:0016604,GO:0016607,GO:0019219,GO:0019222,GO:0022607,GO:0022613,GO:0022618,GO:0030532,GO:0031047,GO:0031090,GO:0031323,GO:0031974,GO:0031981,GO:0032991,GO:0034622,GO:0034641,GO:0034708,GO:0034709,GO:0034715,GO:0034719,GO:0035194,GO:0035770,GO:0036464,GO:0040029,GO:0043021,GO:0043170,GO:0043186,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043484,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044437,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0044877,GO:0045292,GO:0045495,GO:0046483,GO:0046540,GO:0046907,GO:0048519,GO:0050789,GO:0050794,GO:0051169,GO:0051170,GO:0051171,GO:0051179,GO:0051234,GO:0051252,GO:0051641,GO:0051649,GO:0060255,GO:0060293,GO:0065003,GO:0065007,GO:0070013,GO:0070990,GO:0071004,GO:0071007,GO:0071010,GO:0071011,GO:0071013,GO:0071014,GO:0071704,GO:0071826,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:0097525,GO:0097526,GO:0098588,GO:0098805,GO:0120114,GO:1901360,GO:1901363,GO:1902494,GO:1990234,GO:1990446,GO:1990904
EggNOG free text desc.spliceosomal snRNP assembly
EggNOG OGsCOG1958@1,KOG3428@2759
EC1.14.18.1,2.3.2.27
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03032,ko03041,ko04121
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionSmall nuclear ribonucleoprotein-associated protein D1
Ec32 orthologEc-24_004450.1
Exons1
Model size234
Cds size234
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929894.6925933-CDS-H-elongata_contig151266:98..3321622929894.6925933-CDS-H-elongata_contig151266:98..332Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig151266 99..332 -
1691679198.697152-CDS-H-elongata_contig151266:98..3321691679198.697152-CDS-H-elongata_contig151266:98..332Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig151266 99..332 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig151266.3399.1prot_H-elongata_contig151266.3399.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig151266 99..332 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig151266.3399.1

>prot_H-elongata_contig151266.3399.1 ID=prot_H-elongata_contig151266.3399.1|Name=mRNA_H-elongata_contig151266.3399.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=78bp
QVTPKGKNPTTYDSLSIRGNNIRCYILPDNLNLDQLLIDDTPKQKPGRVK
DGGRGRGRGMRGRGRGMRGSGRGRGRL*
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mRNA from alignment at H-elongata_contig151266:99..332-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig151266.3399.1 ID=mRNA_H-elongata_contig151266.3399.1|Name=mRNA_H-elongata_contig151266.3399.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=234bp|location=Sequence derived from alignment at H-elongata_contig151266:99..332- (Himanthalia elongata Himel1 dioecious)
CAGGTGACTCCGAAAGGCAAGAACCCCACCACCTACGATAGCCTTTCCAT
ACGGGGGAACAACATCCGCTGCTACATATTACCGGACAACTTGAACCTGG
ACCAGCTGCTCATCGACGACACGCCGAAGCAGAAGCCGGGGAGGGTAAAG
GATGGAGGAAGAGGGCGCGGCAGAGGCATGCGTGGAAGGGGAAGAGGGAT
GCGGGGTAGCGGGAGGGGTCGCGGTAGGCTCTAA
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Coding sequence (CDS) from alignment at H-elongata_contig151266:99..332-

>mRNA_H-elongata_contig151266.3399.1 ID=mRNA_H-elongata_contig151266.3399.1|Name=mRNA_H-elongata_contig151266.3399.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=468bp|location=Sequence derived from alignment at H-elongata_contig151266:99..332- (Himanthalia elongata Himel1 dioecious)
CAGGTGACTCCGAAAGGCAAGAACCCCACCACCTACGATAGCCTTTCCAT
ACGGGGGAACAACATCCGCTGCTACATATTACCGGACAACTTGAACCTGG
ACCAGCTGCTCATCGACGACACGCCGAAGCAGAAGCCGGGGAGGGTAAAG
GATGGAGGAAGAGGGCGCGGCAGAGGCATGCGTGGAAGGGGAAGAGGGAT
GCGGGGTAGCGGGAGGGGTCGCGGTAGGCTCTAACAGGTGACTCCGAAAG
GCAAGAACCCCACCACCTACGATAGCCTTTCCATACGGGGGAACAACATC
CGCTGCTACATATTACCGGACAACTTGAACCTGGACCAGCTGCTCATCGA
CGACACGCCGAAGCAGAAGCCGGGGAGGGTAAAGGATGGAGGAAGAGGGC
GCGGCAGAGGCATGCGTGGAAGGGGAAGAGGGATGCGGGGTAGCGGGAGG
GGTCGCGGTAGGCTCTAA
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