mRNA_H-elongata_contig151236.3398.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig151236.3398.1
Unique NamemRNA_H-elongata_contig151236.3398.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig151236.3398.1 vs. uniprot
Match: D8LIK8_ECTSI (Rab-GAP TBC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIK8_ECTSI)

HSP 1 Score: 79.7 bits (195), Expect = 4.720e-16
Identity = 33/42 (78.57%), Postives = 36/42 (85.71%), Query Frame = 1 
Query:    1 EVDVAFFAVGWFQTMFLYTTRMPPDTLLWLWDAWVMERSYKA 126
            +VDV FFAVGWFQT+FLY +RMP DTLLWLWD WV ERSYK 
Sbjct: 1737 DVDVTFFAVGWFQTLFLYNSRMPSDTLLWLWDNWVTERSYKV 1778
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BLAST of mRNA_H-elongata_contig151236.3398.1 vs. uniprot
Match: A0A6H5L5V9_9PHAE (Rab-GAP TBC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5V9_9PHAE)

HSP 1 Score: 77.8 bits (190), Expect = 2.250e-15
Identity = 32/42 (76.19%), Postives = 36/42 (85.71%), Query Frame = 1 
Query:    1 EVDVAFFAVGWFQTMFLYTTRMPPDTLLWLWDAWVMERSYKA 126
            +V+V FFAVGWFQT+FLY +RMP DTLLWLWD WV ERSYK 
Sbjct: 2036 DVNVTFFAVGWFQTLFLYNSRMPSDTLLWLWDNWVTERSYKV 2077
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BLAST of mRNA_H-elongata_contig151236.3398.1 vs. uniprot
Match: A0A7S1D5P5_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D5P5_CYCTE)

HSP 1 Score: 58.2 bits (139), Expect = 1.520e-8
Identity = 23/46 (50.00%), Postives = 33/46 (71.74%), Query Frame = 1 
Query:    1 EVDVAFFAVGWFQTMFLYTTRMPPDTLLWLWDAWVMERSYKARYLI 138
            E++V  FA+GWFQT+FLY   MP  T+  LWD W++ERS+K  + +
Sbjct:  167 ELNVGLFALGWFQTLFLYLPSMPSATVCHLWDIWLVERSFKIFFRV 212
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BLAST of mRNA_H-elongata_contig151236.3398.1 vs. uniprot
Match: A0A7R9ZRK5_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9ZRK5_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 1.900e-8
Identity = 22/46 (47.83%), Postives = 33/46 (71.74%), Query Frame = 1 
Query:    1 EVDVAFFAVGWFQTMFLYTTRMPPDTLLWLWDAWVMERSYKARYLI 138
            E++V  FA+GWFQT+FLY   MP  T+  +WD W++ERS+K  + +
Sbjct:  113 ELNVGLFALGWFQTLFLYLPSMPSATVCHMWDIWLVERSFKIFFRV 158
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BLAST of mRNA_H-elongata_contig151236.3398.1 vs. uniprot
Match: A0A7S2U8X4_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2U8X4_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 3.330e-8
Identity = 22/46 (47.83%), Postives = 33/46 (71.74%), Query Frame = 1 
Query:    1 EVDVAFFAVGWFQTMFLYTTRMPPDTLLWLWDAWVMERSYKARYLI 138
            E++V  FA+GWFQT+FLY   MP  T+  +WD W++ERS+K  + +
Sbjct:  233 ELNVGLFALGWFQTLFLYLPSMPSATVCHMWDIWLVERSFKIFFRV 278
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BLAST of mRNA_H-elongata_contig151236.3398.1 vs. uniprot
Match: A0A7S2EQW5_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EQW5_TRICV)

HSP 1 Score: 57.4 bits (137), Expect = 3.330e-8
Identity = 22/46 (47.83%), Postives = 33/46 (71.74%), Query Frame = 1 
Query:    1 EVDVAFFAVGWFQTMFLYTTRMPPDTLLWLWDAWVMERSYKARYLI 138
            E++V  FA+GWFQT+FLY   MP  T+  +WD W++ERS+K  + +
Sbjct:  231 ELNVGLFALGWFQTLFLYLPSMPSATVCHMWDIWLVERSFKIFFRV 276
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BLAST of mRNA_H-elongata_contig151236.3398.1 vs. uniprot
Match: A0A1Z5JKH4_FISSO (Rab-GAP TBC domain-containing protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JKH4_FISSO)

HSP 1 Score: 57.4 bits (137), Expect = 3.490e-8
Identity = 22/46 (47.83%), Postives = 33/46 (71.74%), Query Frame = 1 
Query:    1 EVDVAFFAVGWFQTMFLYTTRMPPDTLLWLWDAWVMERSYKARYLI 138
            E++V  FA+GWFQT+FLY   MP  T+  +WD W++ERS+K  + +
Sbjct: 1326 ELNVGLFALGWFQTLFLYLPSMPSATVCHMWDIWLVERSFKIFFRV 1371
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BLAST of mRNA_H-elongata_contig151236.3398.1 vs. uniprot
Match: A0A1Z5J7K7_FISSO (Rab-GAP TBC domain-containing protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5J7K7_FISSO)

HSP 1 Score: 57.4 bits (137), Expect = 3.490e-8
Identity = 22/46 (47.83%), Postives = 33/46 (71.74%), Query Frame = 1 
Query:    1 EVDVAFFAVGWFQTMFLYTTRMPPDTLLWLWDAWVMERSYKARYLI 138
            E++V  FA+GWFQT+FLY   MP  T+  +WD W++ERS+K  + +
Sbjct: 1356 ELNVGLFALGWFQTLFLYLPSMPSATVCHMWDIWLVERSFKIFFRV 1401
[Close]
BLAST of mRNA_H-elongata_contig151236.3398.1 vs. uniprot
Match: A0A7S0FSX3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0FSX3_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 4.370e-8
Identity = 21/45 (46.67%), Postives = 32/45 (71.11%), Query Frame = 1 
Query:    4 VDVAFFAVGWFQTMFLYTTRMPPDTLLWLWDAWVMERSYKARYLI 138
            ++V  FA+GWFQT+FLY   MP  T+  +WD W++ERS+K  + +
Sbjct:   23 LNVGIFALGWFQTLFLYLPSMPTATVCHMWDIWLVERSFKIFFRV 67
[Close]
BLAST of mRNA_H-elongata_contig151236.3398.1 vs. uniprot
Match: A0A7S1FQF6_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FQF6_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 4.700e-8
Identity = 21/46 (45.65%), Postives = 33/46 (71.74%), Query Frame = 1 
Query:    1 EVDVAFFAVGWFQTMFLYTTRMPPDTLLWLWDAWVMERSYKARYLI 138
            +++V  FA+GWFQT+FLY   MP  T+  +WD W++ERS+K  + +
Sbjct:  342 DLNVGLFALGWFQTLFLYIPSMPSATVCHMWDIWIVERSFKIFFRV 387
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig151236.3398.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LIK8_ECTSI4.720e-1678.57Rab-GAP TBC domain-containing protein n=1 Tax=Ecto... [more]
A0A6H5L5V9_9PHAE2.250e-1576.19Rab-GAP TBC domain-containing protein n=1 Tax=Ecto... [more]
A0A7S1D5P5_CYCTE1.520e-850.00Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
A0A7R9ZRK5_9STRA1.900e-847.83Hypothetical protein n=1 Tax=Craspedostauros austr... [more]
A0A7S2U8X4_9STRA3.330e-847.83Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A7S2EQW5_TRICV3.330e-847.83Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A1Z5JKH4_FISSO3.490e-847.83Rab-GAP TBC domain-containing protein n=1 Tax=Fist... [more]
A0A1Z5J7K7_FISSO3.490e-847.83Rab-GAP TBC domain-containing protein n=1 Tax=Fist... [more]
A0A7S0FSX3_9STRA4.370e-846.67Hypothetical protein (Fragment) n=1 Tax=Minutocell... [more]
A0A7S1FQF6_9STRA4.700e-845.65Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig151236contigH-elongata_contig151236:643..810 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score81.6
Seed ortholog evalue1.2e-13
Seed eggNOG ortholog2880.D8LIK8
EggNOG free text desc.regulation of vesicle fusion
EggNOG OGsCOG5210@1,KOG1102@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size168
Cds size168
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929894.6503334-CDS-H-elongata_contig151236:642..8101622929894.6503334-CDS-H-elongata_contig151236:642..810Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig151236 643..810 -
1691679198.674963-CDS-H-elongata_contig151236:642..8101691679198.674963-CDS-H-elongata_contig151236:642..810Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig151236 643..810 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig151236.3398.1prot_H-elongata_contig151236.3398.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig151236 643..810 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig151236.3398.1

>prot_H-elongata_contig151236.3398.1 ID=prot_H-elongata_contig151236.3398.1|Name=mRNA_H-elongata_contig151236.3398.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=56bp
EVDVAFFAVGWFQTMFLYTTRMPPDTLLWLWDAWVMERSYKARYLIHDTW
YGTST*
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mRNA from alignment at H-elongata_contig151236:643..810-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig151236.3398.1 ID=mRNA_H-elongata_contig151236.3398.1|Name=mRNA_H-elongata_contig151236.3398.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=168bp|location=Sequence derived from alignment at H-elongata_contig151236:643..810- (Himanthalia elongata Himel1 dioecious)
GAAGTGGATGTGGCATTTTTTGCCGTTGGGTGGTTCCAGACTATGTTCCT
CTACACGACGCGGATGCCTCCAGACACTCTCCTTTGGCTGTGGGACGCCT
GGGTGATGGAGCGCTCGTACAAGGCGAGATACCTGATACATGATACATGG
TACGGTACAAGTACCTGA
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Coding sequence (CDS) from alignment at H-elongata_contig151236:643..810-

>mRNA_H-elongata_contig151236.3398.1 ID=mRNA_H-elongata_contig151236.3398.1|Name=mRNA_H-elongata_contig151236.3398.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=336bp|location=Sequence derived from alignment at H-elongata_contig151236:643..810- (Himanthalia elongata Himel1 dioecious)
GAAGTGGATGTGGCATTTTTTGCCGTTGGGTGGTTCCAGACTATGTTCCT
CTACACGACGCGGATGCCTCCAGACACTCTCCTTTGGCTGTGGGACGCCT
GGGTGATGGAGCGCTCGTACAAGGCGAGATACCTGATACATGATACATGG
TACGGTACAAGTACCTGAGAAGTGGATGTGGCATTTTTTGCCGTTGGGTG
GTTCCAGACTATGTTCCTCTACACGACGCGGATGCCTCCAGACACTCTCC
TTTGGCTGTGGGACGCCTGGGTGATGGAGCGCTCGTACAAGGCGAGATAC
CTGATACATGATACATGGTACGGTACAAGTACCTGA
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