mRNA_H-elongata_contig151113.3396.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig151113.3396.1 vs. uniprot
Match: D7FNB5_ECTSI (Heat shock protein 70-putative n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FNB5_ECTSI) HSP 1 Score: 144 bits (362), Expect = 1.020e-38 Identity = 65/67 (97.01%), Postives = 67/67 (100.00%), Query Frame = 1
Query: 1 LMWVVTVPAIWSNFGKRFMRAASHRAGLIADENDMQGLKLCLEPEAACLAVESSNQGIGSWHPGDKV 201
LMWVVTVPAIWSNFGKRFMRAASHRAGLIADENDMQGLKLCLEPEAACLAVESSNQG+GSWHPGDK+
Sbjct: 161 LMWVVTVPAIWSNFGKRFMRAASHRAGLIADENDMQGLKLCLEPEAACLAVESSNQGVGSWHPGDKI 227
BLAST of mRNA_H-elongata_contig151113.3396.1 vs. uniprot
Match: A0A6H5K4X7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4X7_9PHAE) HSP 1 Score: 96.7 bits (239), Expect = 8.260e-23 Identity = 44/67 (65.67%), Postives = 52/67 (77.61%), Query Frame = 1
Query: 1 LMWVVTVPAIWSNFGKRFMRAASHRAGLIADENDMQGLKLCLEPEAACLAVESSNQGIGSWHPGDKV 201
+ WV+TVPAIWS+FGK FMR+A+ RAGLI DENDM+ L+LCLEPEAACL VE + I W G KV
Sbjct: 161 IRWVLTVPAIWSSFGKAFMRSAALRAGLIQDENDMEHLRLCLEPEAACLTVEHHHHNIRKWETGMKV 227
BLAST of mRNA_H-elongata_contig151113.3396.1 vs. uniprot
Match: D7G266_ECTSI (Heat shock protein 70 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G266_ECTSI) HSP 1 Score: 90.5 bits (223), Expect = 1.210e-19 Identity = 41/67 (61.19%), Postives = 50/67 (74.63%), Query Frame = 1
Query: 1 LMWVVTVPAIWSNFGKRFMRAASHRAGLIADENDMQGLKLCLEPEAACLAVESSNQGIGSWHPGDKV 201
+ WV+TVPAIWS+FG FMR A+ RAGLI ENDM+ L+LCLEPEAACL VE ++ + W G KV
Sbjct: 161 IRWVLTVPAIWSSFGTTFMRTAALRAGLIQRENDMEHLRLCLEPEAACLTVEHHHRNVHKWENGMKV 227
BLAST of mRNA_H-elongata_contig151113.3396.1 vs. uniprot
Match: A0A6H5K5B9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5B9_9PHAE) HSP 1 Score: 73.6 bits (179), Expect = 1.100e-13 Identity = 32/49 (65.31%), Postives = 41/49 (83.67%), Query Frame = 1
Query: 7 WVVTVPAIWSNFGKRFMRAASHRAGLIADENDMQGLKLCLEPEAACLAV 153
WVVT+PAI+ +F KRFMR ++HRAG+I+ +D L+LCLEPEAACLAV
Sbjct: 166 WVVTIPAIYDDFAKRFMRVSAHRAGIISAVDDASQLQLCLEPEAACLAV 214
BLAST of mRNA_H-elongata_contig151113.3396.1 vs. uniprot
Match: D7FKB7_ECTSI (Heat shock protein 70 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKB7_ECTSI) HSP 1 Score: 65.1 bits (157), Expect = 1.060e-10 Identity = 30/49 (61.22%), Postives = 38/49 (77.55%), Query Frame = 1
Query: 7 WVVTVPAIWSNFGKRFMRAASHRAGLIADENDMQGLKLCLEPEAACLAV 153
WV+TVPA++ +F K FMR A+H AG+I D+ L+LCLEPEAACLAV
Sbjct: 254 WVLTVPAVYDDFAKHFMRQAAHEAGMI-DKVGSTNLRLCLEPEAACLAV 301
BLAST of mRNA_H-elongata_contig151113.3396.1 vs. uniprot
Match: D7G6V4_ECTSI (Heat shock protein 70 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6V4_ECTSI) HSP 1 Score: 64.7 bits (156), Expect = 1.440e-10 Identity = 31/58 (53.45%), Postives = 43/58 (74.14%), Query Frame = 1
Query: 7 WVVTVPAIWSNFGKRFMRAASHRAGLIADENDMQGLKLCLEPEAACLAVESSNQGIGS 180
WV+TVPAI+ +F KRFMR A++ AG+I D + L+LCLEPEAACLA +++ + S
Sbjct: 153 WVLTVPAIYDDFAKRFMRQAAYEAGMI-DRMNSTRLRLCLEPEAACLAAITTDNPLTS 209
BLAST of mRNA_H-elongata_contig151113.3396.1 vs. uniprot
Match: A0A7S2VBX7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2VBX7_9STRA) HSP 1 Score: 61.2 bits (147), Expect = 2.220e-10 Identity = 29/51 (56.86%), Postives = 39/51 (76.47%), Query Frame = 1
Query: 4 MWVVTVPAIWSNFGKRFMRAASHRAGLIADENDMQGLKLCLEPEAACLAVE 156
+WV+TVPAIW++FGK MR A+ RAGL+ADE + L L LEPE A +A++
Sbjct: 1 LWVITVPAIWNDFGKSVMRKAACRAGLVADEAS-ERLLLALEPECASIAMQ 50
BLAST of mRNA_H-elongata_contig151113.3396.1 vs. uniprot
Match: A0A7S3H194_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H194_9STRA) HSP 1 Score: 60.1 bits (144), Expect = 1.670e-9 Identity = 30/51 (58.82%), Postives = 37/51 (72.55%), Query Frame = 1
Query: 1 LMWVVTVPAIWSNFGKRFMRAASHRAGLIADENDMQGLKLCLEPEAACLAV 153
+ WV+TVPAIW++FGK FMR A+ RAGL+ E L+L LEPE A LAV
Sbjct: 13 VQWVLTVPAIWNDFGKAFMRKAAFRAGLMETELS-DNLQLVLEPEGAALAV 62
BLAST of mRNA_H-elongata_contig151113.3396.1 vs. uniprot
Match: A0A6H5JSM6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSM6_9PHAE) HSP 1 Score: 61.2 bits (147), Expect = 2.400e-9 Identity = 30/49 (61.22%), Postives = 36/49 (73.47%), Query Frame = 1
Query: 7 WVVTVPAIWSNFGKRFMRAASHRAGLIADENDMQGLKLCLEPEAACLAV 153
WV+TVPAI+ +F KRFMR A+ AG+I D L+LCLEPEAACLA
Sbjct: 157 WVLTVPAIYDDFAKRFMRQAAFEAGMI-DRVHSTRLRLCLEPEAACLAA 204
BLAST of mRNA_H-elongata_contig151113.3396.1 vs. uniprot
Match: UPI001E1E1248 (heat shock 70 kDa protein 12A-like n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1E1248) HSP 1 Score: 60.1 bits (144), Expect = 6.140e-9 Identity = 34/76 (44.74%), Postives = 45/76 (59.21%), Query Frame = 1
Query: 1 LMWVVTVPAIWSNFGKRFMRAASHRAGLIADENDMQGLKLCLEPEAA---------CLAV-ESSNQGIGSWHPGDK 198
+ WV+TVPAIWS+ K+FMR A++RAG+ D + LKL LEPEAA C+ V +S +HPG K
Sbjct: 141 IKWVLTVPAIWSDSAKQFMREAAYRAGI-----DAENLKLVLEPEAAAAHCLNKPMCVVVKQSGGTQYEKFHPGQK 211 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig151113.3396.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig151113.3396.1 >prot_H-elongata_contig151113.3396.1 ID=prot_H-elongata_contig151113.3396.1|Name=mRNA_H-elongata_contig151113.3396.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=66bp MWVVTVPAIWSNFGKRFMRAASHRAGLIADENDMQGLKLCLEPEAACLAVback to top mRNA from alignment at H-elongata_contig151113:947..1147+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig151113.3396.1 ID=mRNA_H-elongata_contig151113.3396.1|Name=mRNA_H-elongata_contig151113.3396.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=201bp|location=Sequence derived from alignment at H-elongata_contig151113:947..1147+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig151113:947..1147+ >mRNA_H-elongata_contig151113.3396.1 ID=mRNA_H-elongata_contig151113.3396.1|Name=mRNA_H-elongata_contig151113.3396.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=396bp|location=Sequence derived from alignment at H-elongata_contig151113:947..1147+ (Himanthalia elongata Himel1 dioecious)back to top |