mRNA_H-elongata_contig15108.3395.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig15108.3395.1
Unique NamemRNA_H-elongata_contig15108.3395.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig15108.3395.1 vs. uniprot
Match: D7FU82_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU82_ECTSI)

HSP 1 Score: 166 bits (420), Expect = 7.210e-45
Identity = 76/102 (74.51%), Postives = 90/102 (88.24%), Query Frame = 1 
Query: 1138 VGAAASIGSGVENPQLKLAGEVTFESKTGITYIGKVVAIDPTPKSNAPRGIVRVKYDDWPYDRYDEDISMELVTPKGWLPTALGRAGRRASKPVKTFTPSLE 1443
            VGA+AS+GSGVENPQLKLAG VTF++K+GITY G+VVAIDP P   +PRG+VRVKYDDWPYD+YDED+S E+VTP GW+PT +GRAGRRASKP  TFTPS +
Sbjct:   50 VGASASVGSGVENPQLKLAGLVTFQNKSGITYKGRVVAIDPRPFPGSPRGVVRVKYDDWPYDKYDEDVSTEMVTPFGWVPTPVGRAGRRASKPPPTFTPSTD 151
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig15108.3395.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FU82_ECTSI7.210e-4574.51Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig15108contigH-elongata_contig15108:4216..7237 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons6
Model size1641
Cds size1641
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig15108.3395.1prot_H-elongata_contig15108.3395.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig15108 4216..7237 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929894.375703-CDS-H-elongata_contig15108:4215..44661622929894.375703-CDS-H-elongata_contig15108:4215..4466Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15108 4216..4466 +
1691679198.5692992-CDS-H-elongata_contig15108:4215..44661691679198.5692992-CDS-H-elongata_contig15108:4215..4466Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15108 4216..4466 +
1622929894.390187-CDS-H-elongata_contig15108:4610..51141622929894.390187-CDS-H-elongata_contig15108:4610..5114Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15108 4611..5114 +
1691679198.578902-CDS-H-elongata_contig15108:4610..51141691679198.578902-CDS-H-elongata_contig15108:4610..5114Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15108 4611..5114 +
1622929894.406755-CDS-H-elongata_contig15108:5192..55791622929894.406755-CDS-H-elongata_contig15108:5192..5579Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15108 5193..5579 +
1691679198.5877826-CDS-H-elongata_contig15108:5192..55791691679198.5877826-CDS-H-elongata_contig15108:5192..5579Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15108 5193..5579 +
1622929894.4217503-CDS-H-elongata_contig15108:6068..62511622929894.4217503-CDS-H-elongata_contig15108:6068..6251Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15108 6069..6251 +
1691679198.599926-CDS-H-elongata_contig15108:6068..62511691679198.599926-CDS-H-elongata_contig15108:6068..6251Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15108 6069..6251 +
1622929894.4381104-CDS-H-elongata_contig15108:6610..67281622929894.4381104-CDS-H-elongata_contig15108:6610..6728Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15108 6611..6728 +
1691679198.608651-CDS-H-elongata_contig15108:6610..67281691679198.608651-CDS-H-elongata_contig15108:6610..6728Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15108 6611..6728 +
1622929894.4586542-CDS-H-elongata_contig15108:7039..72371622929894.4586542-CDS-H-elongata_contig15108:7039..7237Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15108 7040..7237 +
1691679198.6178594-CDS-H-elongata_contig15108:7039..72371691679198.6178594-CDS-H-elongata_contig15108:7039..7237Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15108 7040..7237 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig15108.3395.1

>prot_H-elongata_contig15108.3395.1 ID=prot_H-elongata_contig15108.3395.1|Name=mRNA_H-elongata_contig15108.3395.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=547bp
GAATVTQGFPRSCLLANCYLKKPKLFNNVDEYTKHVLKCMHQDDRRKAAA
SFAMDRSASPRRQSNRITTVPLRVCLDHEIPARAKSVDVRDTLSGVGGDG
CNSKTRYAEVPSSDASTISDGDDTNGGIVSVSGSSSGNGSESAQQRRNVE
SSSASNGIISNGSRNGSGSGSRGRLQWSPAISGGTSGLEDDVTGYTAAGR
PTRKLSGRLSAGRAGDGGGSSGSGSAVATGAASQRPRASSLTMAARGRAS
TAGGSGSGGARKGRATSGQGGTVSIERPTGARARVSGDPSPGVEIGSSRG
LSVDNSEKEAEGVISVATLSSRAQLATWRGSLGLWGPGGGFTCPVNPLEE
WDLPGCGRESRARDMKCDSCQRVLRVDWHVGAAASIGSGVENPQLKLAGE
VTFESKTGITYIGKVVAIDPTPKSNAPRGIVRVKYDDWPYDRYDEDISME
LVTPKGWLPTALGRAGRRASKPVKTFTPSLEPCYKRRSMSVVEALELYRS
RFGDGDGSGEGLDTSEGVVDDEIDEFEGKVKEEEKEEEEEEEEEEAP
back to top

mRNA from alignment at H-elongata_contig15108:4216..7237+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig15108.3395.1 ID=mRNA_H-elongata_contig15108.3395.1|Name=mRNA_H-elongata_contig15108.3395.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3022bp|location=Sequence derived from alignment at H-elongata_contig15108:4216..7237+ (Himanthalia elongata Himel1 dioecious)
GGGGCTGCTACCGTTACGCAGGGGTTTCCAAGGAGTTGCCTGCTCGCAAA
CTGCTACCTGAAGAAGCCCAAGCTGTTCAACAACGTGGACGAGTACACGA
AGCACGTGCTAAAGTGCATGCACCAGGACGACCGCCGTAAGGCCGCCGCC
AGCTTCGCGATGGATCGGAGCGCTTCTCCGAGGAGGCAAAGCAACCGCAT
CACGACCGTTCCACTCCGTGTTTGCCTCGACCACGAGATTCCTGCGAGGG
CGTCGACTCCCCACTCTCGCCGATCTTACGTAGATGCTGCGGACGTCACA
CCGATTTCCATGCCGCTGTCCTTGCCCGCGACTTCCCCCTTGGCCGCGTC
GTCGTCCGCCAAGGGTCCAGACTGCACCGGTCTTCGAGGCGGAAGGAAAT
CGGTTGACGTCAGGGATACCCTTTCCGGGGTGGGCGGCGATGGTTGTAAC
TCAAAAACCCGGTACGCCGAGGTGCCGTCGAGCGATGCCTCCACCATTAG
TGACGGAGATGACACTAACGGTGGCATTGTCAGTGTCAGCGGCAGCAGCA
GCGGTAACGGTAGTGAGAGCGCCCAACAGAGACGGAATGTCGAATCATCT
AGTGCCTCGAACGGCATAATCTCCAATGGAAGTAGGAATGGCAGTGGAAG
CGGGAGCCGTGGCCGTCTTCAGTGGAGCCCGGCGATTAGCGGGGGAACCA
GCGGCCTTGAAGATGACGTCACCGGGTACACCGCCGCCGGGCGCCCCACC
CGCAAGCTTAGTGGCCGCCTCAGCGCTGGCCGCGCTGGCGATGGTGGTGG
TAGCAGCGGTAGTGGCAGCGCGGTGGCCACCGGCGCTGCATCCCAACGGC
CTCGAGCTTCTTCGTTGACCATGGCTGCCAGGGGGAGAGCTAGCACCGCG
TCCCATGAAAACGGTAGCCAAAGCCGTGCCTTGTCGATGCCCGCCAATGG
CAGCAACGGTATCGGTGGTGGCGGCAGCGGCGGAAGCGGCAGCGGTGGCG
CTCGTAAAGGGCGGGCCACCTCTGGACAAGGAGGGACAGTATCCATTGAG
AGGCCAACAGGGGCTCGCGCTCGGGTGAGTGGCGACCCCTCACCAGGTGT
GGAGATTGGGAGTTCGAGAGGATTATCTGTGGATAACTCGGAGAAGGAAG
CCGAGGGTGTTATATCCGTGGCGACTTTGTCGAGTCGGGCACAACTGGCG
ACTTGGAGGGGATCCCTGGGGTTGTGGGGACCCGGCGGGGGATTCACGTG
CCCGGTGAACCCTTTGGAAGAGTGGGATCTTCCAGGTTGCGGCAGAGAGA
GCCGAGCGCGGGACATGAAGTGCGACTCCTGCCAAAGAGTACTGAGGGTC
GACTGGCACGTTGGGTGAGTGTGTGAGCCGATGTATTTTATGCGTGTCTA
GTTCTAATGGATTTAGCAGGCGAAAAGCGAAGTAGTCCTGGTTTAGTCCT
CGGGAGAAAAATTTTGTGTGGGTCTGGATGTCGAGGTCGTATGCTTTCCG
GGCTTTGTCTGGAATATTTCGAAAAGCTAGCGCGGCCCTCGAGGAGTCTA
GAATACGAAACATGGACGAAATAAACACTCTGCCGTGTTCGCTCTATTTG
TTTTTGATAACAGTTTCCCATTTTTTTTCTGCCGGCGGTCCTCGCGAGGA
CCACCCCTAGACCTCGCGAGTTTTTTTCTCCGATCCTGGACGATGTCGAC
CCAAGTTACTGGCCTCGAACTGTCAAAGTTCTCGTAAGTTACTAATCGCT
AAAAACTTTGTATTGAAGCCTCGTTAATAAATATTACAGCTCACCATTTT
CTCCCCTCTCCTCCTCTCTCCCATTGTGGAACACGCCTCCGCAAACATCC
CAGTGCCGCGGCATCCATCGGGAGCGGCGTGGAGAACCCCCAGCTAAAAC
TCGCGGGGGAGGTTACGTTCGAGAGCAAGACCGGCATCACGTACATTGGC
AAGGTGGTGGCCATAGACCCCACGCCAAAGTCGAACGCTCCTCGCGGCAT
CGTTCGAGTGAAATATGATGACTGGCCTTACGACAGGTTAGCGGTCACCG
GTTTCCGGTTAGCCATTGATGGAGTAGAAGAGTTGGATGGAGGGATTCGT
CTATGTGTTTTGTAGTCTTGCGTTCTAGCTGATTTTATCAGGTTATTGTC
ATCGCAGTCGTCTGTCGCTTTCTCTCTCCCTCTCTTCCCATTTTTTTGTG
TGGCTTTGGTTTTTATGGATCACCGTGGCCGCCGCCGTATAGTCCTTTTC
TTGATGCTCGTCAGCGCTCTCCCCCCCCCTCCCCTCCCAAACAACGCCAC
CCTAACTCCCGTCTAAAATCTTAAAAGGTAGCCGTCGCTCTCTCTTCTCC
ACTCCCTTTCGTGGCGTCGTAACGGCCCCGGCTTTGCTCCCTCAGGTACG
ACGAGGATATCAGCATGGAGCTTGTGACCCCTAAGGGCTGGCTGCCAACT
GCCCTCGGTAGGGCGGGCAGGCGTGCCAGCAAGCCCGTCAAGACCTTTAC
CCCCTCCCTCGAGGTGTGTGCTCCGCCGTATACCGTCTACCGTATACCGT
TGTAATCGATTCCACTCCCTCCTCTCGCCCCTCTTGTTTGTTTCTCTACT
TTTTTTGTCTCATAGAAAATCGTAAACTATTTGTAAACACTTTTATATTT
TCTTTATTTTTATTTTTGTCTCATTACATTATTATTATTATCGTTTCCAT
GTTTTTTTAAGCAAAGCTTCTGTGATGCTCGCCTTAACTTTCCATTCTCT
TCCATTCCCTTCCATTTCTTTTTGTTCCCCTTCCTCAAACTCAACGCGCA
ACTCACCCTCGCCGGGGCGCGCAGCCTTGCTACAAGCGCAGGTCGATGAG
TGTCGTGGAAGCGTTGGAGCTATACCGCAGCAGGTTCGGCGACGGCGATG
GGTCTGGGGAAGGGCTGGACACCTCCGAAGGCGTGGTAGACGATGAAATA
GATGAGTTCGAGGGAAAGGTCAAGGAGGAGGAGAAAGAAGAGGAGGAGGA
GGAGGAAGAAGAGGAGGCTCCA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig15108:4216..7237+

>mRNA_H-elongata_contig15108.3395.1 ID=mRNA_H-elongata_contig15108.3395.1|Name=mRNA_H-elongata_contig15108.3395.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=3282bp|location=Sequence derived from alignment at H-elongata_contig15108:4216..7237+ (Himanthalia elongata Himel1 dioecious)
GGGGCTGCTACCGTTACGCAGGGGTTTCCAAGGAGTTGCCTGCTCGCAAA
CTGCTACCTGAAGAAGCCCAAGCTGTTCAACAACGTGGACGAGTACACGA
AGCACGTGCTAAAGTGCATGCACCAGGACGACCGCCGTAAGGCCGCCGCC
AGCTTCGCGATGGATCGGAGCGCTTCTCCGAGGAGGCAAAGCAACCGCAT
CACGACCGTTCCACTCCGTGTTTGCCTCGACCACGAGATTCCTGCGAGGG
CGGGGCTGCTACCGTTACGCAGGGGTTTCCAAGGAGTTGCCTGCTCGCAA
ACTGCTACCTGAAGAAGCCCAAGCTGTTCAACAACGTGGACGAGTACACG
AAGCACGTGCTAAAGTGCATGCACCAGGACGACCGCCGTAAGGCCGCCGC
CAGCTTCGCGATGGATCGGAGCGCTTCTCCGAGGAGGCAAAGCAACCGCA
TCACGACCGTTCCACTCCGTGTTTGCCTCGACCACGAGATTCCTGCGAGG
GCGAAATCGGTTGACGTCAGGGATACCCTTTCCGGGGTGGGCGGCGATGG
TTGTAACTCAAAAACCCGGTACGCCGAGGTGCCGTCGAGCGATGCCTCCA
CCATTAGTGACGGAGATGACACTAACGGTGGCATTGTCAGTGTCAGCGGC
AGCAGCAGCGGTAACGGTAGTGAGAGCGCCCAACAGAGACGGAATGTCGA
ATCATCTAGTGCCTCGAACGGCATAATCTCCAATGGAAGTAGGAATGGCA
GTGGAAGCGGGAGCCGTGGCCGTCTTCAGTGGAGCCCGGCGATTAGCGGG
GGAACCAGCGGCCTTGAAGATGACGTCACCGGGTACACCGCCGCCGGGCG
CCCCACCCGCAAGCTTAGTGGCCGCCTCAGCGCTGGCCGCGCTGGCGATG
GTGGTGGTAGCAGCGGTAGTGGCAGCGCGGTGGCCACCGGCGCTGCATCC
CAACGGCCTCGAGCTTCTTCGTTGACCATGGCTGCCAGGGGGAGAGCTAG
CACCGCGAAATCGGTTGACGTCAGGGATACCCTTTCCGGGGTGGGCGGCG
ATGGTTGTAACTCAAAAACCCGGTACGCCGAGGTGCCGTCGAGCGATGCC
TCCACCATTAGTGACGGAGATGACACTAACGGTGGCATTGTCAGTGTCAG
CGGCAGCAGCAGCGGTAACGGTAGTGAGAGCGCCCAACAGAGACGGAATG
TCGAATCATCTAGTGCCTCGAACGGCATAATCTCCAATGGAAGTAGGAAT
GGCAGTGGAAGCGGGAGCCGTGGCCGTCTTCAGTGGAGCCCGGCGATTAG
CGGGGGAACCAGCGGCCTTGAAGATGACGTCACCGGGTACACCGCCGCCG
GGCGCCCCACCCGCAAGCTTAGTGGCCGCCTCAGCGCTGGCCGCGCTGGC
GATGGTGGTGGTAGCAGCGGTAGTGGCAGCGCGGTGGCCACCGGCGCTGC
ATCCCAACGGCCTCGAGCTTCTTCGTTGACCATGGCTGCCAGGGGGAGAG
CTAGCACCGCCGGCGGAAGCGGCAGCGGTGGCGCTCGTAAAGGGCGGGCC
ACCTCTGGACAAGGAGGGACAGTATCCATTGAGAGGCCAACAGGGGCTCG
CGCTCGGGTGAGTGGCGACCCCTCACCAGGTGTGGAGATTGGGAGTTCGA
GAGGATTATCTGTGGATAACTCGGAGAAGGAAGCCGAGGGTGTTATATCC
GTGGCGACTTTGTCGAGTCGGGCACAACTGGCGACTTGGAGGGGATCCCT
GGGGTTGTGGGGACCCGGCGGGGGATTCACGTGCCCGGTGAACCCTTTGG
AAGAGTGGGATCTTCCAGGTTGCGGCAGAGAGAGCCGAGCGCGGGACATG
AAGTGCGACTCCTGCCAAAGAGTACTGAGGGTCGACTGGCACGTTGGCGG
CGGAAGCGGCAGCGGTGGCGCTCGTAAAGGGCGGGCCACCTCTGGACAAG
GAGGGACAGTATCCATTGAGAGGCCAACAGGGGCTCGCGCTCGGGTGAGT
GGCGACCCCTCACCAGGTGTGGAGATTGGGAGTTCGAGAGGATTATCTGT
GGATAACTCGGAGAAGGAAGCCGAGGGTGTTATATCCGTGGCGACTTTGT
CGAGTCGGGCACAACTGGCGACTTGGAGGGGATCCCTGGGGTTGTGGGGA
CCCGGCGGGGGATTCACGTGCCCGGTGAACCCTTTGGAAGAGTGGGATCT
TCCAGGTTGCGGCAGAGAGAGCCGAGCGCGGGACATGAAGTGCGACTCCT
GCCAAAGAGTACTGAGGGTCGACTGGCACGTTGGTGCCGCGGCATCCATC
GGGAGCGGCGTGGAGAACCCCCAGCTAAAACTCGCGGGGGAGGTTACGTT
CGAGAGCAAGACCGGCATCACGTACATTGGCAAGGTGGTGGCCATAGACC
CCACGCCAAAGTCGAACGCTCCTCGCGGCATCGTTCGAGTGAAATATGAT
GACTGGCCTTACGACAGTGCCGCGGCATCCATCGGGAGCGGCGTGGAGAA
CCCCCAGCTAAAACTCGCGGGGGAGGTTACGTTCGAGAGCAAGACCGGCA
TCACGTACATTGGCAAGGTGGTGGCCATAGACCCCACGCCAAAGTCGAAC
GCTCCTCGCGGCATCGTTCGAGTGAAATATGATGACTGGCCTTACGACAG
GTACGACGAGGATATCAGCATGGAGCTTGTGACCCCTAAGGGCTGGCTGC
CAACTGCCCTCGGTAGGGCGGGCAGGCGTGCCAGCAAGCCCGTCAAGACC
TTTACCCCCTCCCTCGAGGTACGACGAGGATATCAGCATGGAGCTTGTGA
CCCCTAAGGGCTGGCTGCCAACTGCCCTCGGTAGGGCGGGCAGGCGTGCC
AGCAAGCCCGTCAAGACCTTTACCCCCTCCCTCGAGCCTTGCTACAAGCG
CAGGTCGATGAGTGTCGTGGAAGCGTTGGAGCTATACCGCAGCAGGTTCG
GCGACGGCGATGGGTCTGGGGAAGGGCTGGACACCTCCGAAGGCGTGGTA
GACGATGAAATAGATGAGTTCGAGGGAAAGGTCAAGGAGGAGGAGAAAGA
AGAGGAGGAGGAGGAGGAAGAAGAGGAGGCTCCACCTTGCTACAAGCGCA
GGTCGATGAGTGTCGTGGAAGCGTTGGAGCTATACCGCAGCAGGTTCGGC
GACGGCGATGGGTCTGGGGAAGGGCTGGACACCTCCGAAGGCGTGGTAGA
CGATGAAATAGATGAGTTCGAGGGAAAGGTCAAGGAGGAGGAGAAAGAAG
AGGAGGAGGAGGAGGAAGAAGAGGAGGCTCCA
back to top