mRNA_H-elongata_contig151039.3392.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig151039.3392.1
Unique NamemRNA_H-elongata_contig151039.3392.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig151039.3392.1 vs. uniprot
Match: A0A6H5KVV7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVV7_9PHAE)

HSP 1 Score: 100 bits (250), Expect = 1.540e-20
Identity = 82/230 (35.65%), Postives = 106/230 (46.09%), Query Frame = 1 
Query:  145 IYRVAADSLQELHGVESMTAPTLEKIMALLQLGPRQLVKQGLAPRRLLQETLIASLPAPEDESDEGEERALFEVAVVLEENIGSNTLDAKQMDGDVIHEEGRSSDDNDKVKEKENEMRKKPKWKPMRPIQEALAATGIQLSPRETKTLLRALGVTPHRFVQLGLIDHMALRAKHVEKWPNVARQKRGLDR--PCRLNHNMRGPPHGPPHVQDQFGHHKHGGIGRGRSVSP 828
            +Y+  A +L+E HGV SMTA  LEK M LL+L P +LV QGLAP +LL+    A   A   +S  G   +  E     +  +  +        GD  H+  R          K N +  +   +   P+  AL A GI L PRET+ LLRALGV PHR V+LGL+    LR           R + G  R  P  L H   G P G  H   + G     G+GR R   P
Sbjct:   26 LYKATARNLREYHGVPSMTADNLEKTMVLLRLRPGRLVVQGLAPEKLLKGFSAADAHADTTDSS-GSSGSEVEPEQADDNQVSDDXXXXXXXSGDTEHDNIR----------KHNSLGFETNKRSKHPVHAALVAAGITLRPRETRPLLRALGVGPHRLVKLGLVQREELR-----------RSRPGGRRGGPSHLRHGHPGGPGGRXHXXXRGGR----GMGRPRGPPP 229
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BLAST of mRNA_H-elongata_contig151039.3392.1 vs. uniprot
Match: A0A6H5L2C8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2C8_9PHAE)

HSP 1 Score: 59.7 bits (143), Expect = 1.190e-6
Identity = 52/166 (31.33%), Postives = 70/166 (42.17%), Query Frame = 1 
Query:  196 MTAPTLEKIMALLQLGPRQLVKQGLAPRRLLQETLIA--SLPAPEDESDEGEERALFEVAVVLEENIGSNTLDAKQMDGDVIHEEGRSSDDNDKVKEKENEMRKKPKWKPMRPIQEALAATGIQLSPRETKTLLRALGVTPHRFVQLGLIDHMALRAKHVEKWPNV 687
            MTA  LEK M LLQL P +LV QGLAP++LL     A  +                       + N  S            I  +  ++ D+  ++   ++           PI     A G+QL PRET+ LLRALGV PHR V+LGL+     R       P+ 
Sbjct:    1 MTAGGLEKTMVLLQLRPGRLVAQGLAPKQLLDGKSAAGDAXXXXXXXXXXXXXXXXXXXPEQADNNPVSXXXXXXXXXXXXIEHDNIATQDSIDMEAGASKH----------PIHAVFVAAGVQLRPRETRPLLRALGVGPHRLVKLGLVQREEARRSRPGGTPST 156
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig151039.3392.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KVV7_9PHAE1.540e-2035.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L2C8_9PHAE1.190e-631.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig151039contigH-elongata_contig151039:341..1282 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size858
Cds size858
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929893.8382292-CDS-H-elongata_contig151039:340..11311622929893.8382292-CDS-H-elongata_contig151039:340..1131Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig151039 341..1131 +
1691679198.4135711-CDS-H-elongata_contig151039:340..11311691679198.4135711-CDS-H-elongata_contig151039:340..1131Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig151039 341..1131 +
1622929893.852482-CDS-H-elongata_contig151039:1215..12821622929893.852482-CDS-H-elongata_contig151039:1215..1282Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig151039 1216..1282 +
1691679198.42166-CDS-H-elongata_contig151039:1215..12821691679198.42166-CDS-H-elongata_contig151039:1215..1282Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig151039 1216..1282 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig151039.3392.1prot_H-elongata_contig151039.3392.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig151039 341..1282 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig151039.3392.1

>prot_H-elongata_contig151039.3392.1 ID=prot_H-elongata_contig151039.3392.1|Name=mRNA_H-elongata_contig151039.3392.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=286bp
MDNSNSSNINISSDSNDTTMNKSTNSDDNTKNNTMRPAEAKATLVPEAIY
RVAADSLQELHGVESMTAPTLEKIMALLQLGPRQLVKQGLAPRRLLQETL
IASLPAPEDESDEGEERALFEVAVVLEENIGSNTLDAKQMDGDVIHEEGR
SSDDNDKVKEKENEMRKKPKWKPMRPIQEALAATGIQLSPRETKTLLRAL
GVTPHRFVQLGLIDHMALRAKHVEKWPNVARQKRGLDRPCRLNHNMRGPP
HGPPHVQDQFGHHKHGGIGRGRSVSPLYFRDRFSRH
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mRNA from alignment at H-elongata_contig151039:341..1282+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig151039.3392.1 ID=mRNA_H-elongata_contig151039.3392.1|Name=mRNA_H-elongata_contig151039.3392.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=942bp|location=Sequence derived from alignment at H-elongata_contig151039:341..1282+ (Himanthalia elongata Himel1 dioecious)
ATGGACAACAGCAACAGCAGCAACATCAACATTAGTAGCGACAGCAACGA
CACGACGATGAATAAGAGCACCAATAGCGATGATAACACAAAAAACAACA
CCATGCGTCCTGCCGAGGCCAAGGCTACGCTTGTGCCCGAAGCTATCTAT
AGAGTGGCGGCAGACAGCCTGCAAGAGCTCCATGGGGTGGAGTCTATGAC
TGCGCCCACCCTCGAGAAGATCATGGCCCTCCTGCAGCTGGGGCCTCGTC
AGCTAGTGAAACAGGGGCTAGCGCCGCGAAGGCTCTTGCAGGAAACGCTA
ATAGCTTCATTGCCTGCGCCAGAGGATGAGTCCGATGAAGGCGAGGAGAG
AGCGTTGTTCGAGGTAGCGGTCGTACTTGAAGAGAACATCGGGAGTAATA
CCTTGGATGCGAAGCAGATGGACGGAGATGTGATTCACGAGGAGGGGCGG
TCGAGCGACGACAATGACAAAGTCAAAGAAAAGGAGAACGAGATGCGGAA
GAAACCGAAGTGGAAACCGATGCGCCCCATCCAAGAAGCTCTGGCCGCCA
CCGGCATCCAGCTTAGTCCCCGCGAGACTAAGACTCTGCTTCGTGCTCTC
GGCGTCACTCCTCACCGCTTTGTACAACTTGGGCTCATTGACCATATGGC
CCTTCGAGCCAAGCACGTTGAGAAGTGGCCCAACGTCGCTCGCCAAAAAA
GAGGCCTAGATCGCCCTTGCCGCTTAAACCACAACATGAGAGGCCCTCCG
CACGGTCCTCCCCACGTTCAGGACCAATTCGGCCACCACAAGCGCCGTTC
CACTAGCGAGAACGGGGGAAAGCACGGCCGAATGCTGCACAGCCCACCAT
TCGCCAATAGCCTACCTCACGGTAGGCACGGCGGCATTGGGAGGGGGCGC
TCTGTTTCCCCGCTGTACTTTCGGGACCGCTTTAGTCGCCAC
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Coding sequence (CDS) from alignment at H-elongata_contig151039:341..1282+

>mRNA_H-elongata_contig151039.3392.1 ID=mRNA_H-elongata_contig151039.3392.1|Name=mRNA_H-elongata_contig151039.3392.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1716bp|location=Sequence derived from alignment at H-elongata_contig151039:341..1282+ (Himanthalia elongata Himel1 dioecious)
ATGGACAACAGCAACAGCAGCAACATCAACATTAGTAGCGACAGCAACGA
CACGACGATGAATAAGAGCACCAATAGCGATGATAACACAAAAAACAACA
CCATGCGTCCTGCCGAGGCCAAGGCTACGCTTGTGCCCGAAGCTATCTAT
AGAGTGGCGGCAGACAGCCTGCAAGAGCTCCATGGGGTGGAGTCTATGAC
TGCGCCCACCCTCGAGAAGATCATGGCCCTCCTGCAGCTGGGGCCTCGTC
AGCTAGTGAAACAGGGGCTAGCGCCGCGAAGGCTCTTGCAGGAAACGCTA
ATAGCTTCATTGCCTGCGCCAGAGGATGAGTCCGATGAAGGCGAGGAGAG
AGCGTTGTTCGAGGTAGCGGTCGTACTTGAAGAGAACATCGGGAGTAATA
CCTTGGATGCGAAGCAGATGGACGGAGATGTGATTCACGAGGAGGGGCGG
TCGAGCGACGACAATGACAAAGTCAAAGAAAAGGAGAACGAGATGCGGAA
GAAACCGAAGTGGAAACCGATGCGCCCCATCCAAGAAGCTCTGGCCGCCA
CCGGCATCCAGCTTAGTCCCCGCGAGACTAAGACTCTGCTTCGTGCTCTC
GGCGTCACTCCTCACCGCTTTGTACAACTTGGGCTCATTGACCATATGGC
CCTTCGAGCCAAGCACGTTGAGAAGTGGCCCAACGTCGCTCGCCAAAAAA
GAGGCCTAGATCGCCCTTGCCGCTTAAACCACAACATGAGAGGCCCTCCG
CACGGTCCTCCCCACGTTCAGGACCAATTCGGCCACCACAAATGGACAAC
AGCAACAGCAGCAACATCAACATTAGTAGCGACAGCAACGACACGACGAT
GAATAAGAGCACCAATAGCGATGATAACACAAAAAACAACACCATGCGTC
CTGCCGAGGCCAAGGCTACGCTTGTGCCCGAAGCTATCTATAGAGTGGCG
GCAGACAGCCTGCAAGAGCTCCATGGGGTGGAGTCTATGACTGCGCCCAC
CCTCGAGAAGATCATGGCCCTCCTGCAGCTGGGGCCTCGTCAGCTAGTGA
AACAGGGGCTAGCGCCGCGAAGGCTCTTGCAGGAAACGCTAATAGCTTCA
TTGCCTGCGCCAGAGGATGAGTCCGATGAAGGCGAGGAGAGAGCGTTGTT
CGAGGTAGCGGTCGTACTTGAAGAGAACATCGGGAGTAATACCTTGGATG
CGAAGCAGATGGACGGAGATGTGATTCACGAGGAGGGGCGGTCGAGCGAC
GACAATGACAAAGTCAAAGAAAAGGAGAACGAGATGCGGAAGAAACCGAA
GTGGAAACCGATGCGCCCCATCCAAGAAGCTCTGGCCGCCACCGGCATCC
AGCTTAGTCCCCGCGAGACTAAGACTCTGCTTCGTGCTCTCGGCGTCACT
CCTCACCGCTTTGTACAACTTGGGCTCATTGACCATATGGCCCTTCGAGC
CAAGCACGTTGAGAAGTGGCCCAACGTCGCTCGCCAAAAAAGAGGCCTAG
ATCGCCCTTGCCGCTTAAACCACAACATGAGAGGCCCTCCGCACGGTCCT
CCCCACGTTCAGGACCAATTCGGCCACCACAAGCACGGCGGCATTGGGAG
GGGGCGCTCTGTTTCCCCGCTGTACTTTCGGGACCGCTTTAGTCGCCACG
CACGGCGGCATTGGGAGGGGGCGCTCTGTTTCCCCGCTGTACTTTCGGGA
CCGCTTTAGTCGCCAC
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