mRNA_H-elongata_contig151.3387.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig151.3387.1 vs. uniprot
Match: D8LBX5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBX5_ECTSI) HSP 1 Score: 384 bits (986), Expect = 1.400e-107 Identity = 413/1281 (32.24%), Postives = 550/1281 (42.94%), Query Frame = 1
Query: 1 WNLEAEVERILKDPVAVQSFRHAVKRLAKMAKAGGIYVDAYFALSVLEVAFGGLLQRIPKLLPVVQTTIKRRGLTIKISNLNLAGVHFPRSEIRLAYKGISLPPNGSIVETKTPFGKWRRPGRVLYYKKRSHSLCVELLRFPLSKGRRKYARAFIQPGDAVLVVSER-KTVDSAAAVPTSPRDTPSTVIPPVPTVAASVANSGTAVGD-------LFPTESVTEASSSDQNSPT-HTRAGGKMRLVLA-LQQHLPGRFRQMGADDGKRRRQRWSLSGANSQPSPVRRAPSEAEGGLARVDPSLADGDVRVTNG---ACASSSG--GXGSGSDSLAD-------VHDDRGQCTNAAEFTSKRSEPSVVSSTAREQLGEGSRDGWDPSGVAMSDSAASEGLTGAENPTGSRQETDTGLTGARQPFRLSPLFPLSPLSRKPSPVDISPECLDAGGSLASSNGRNISISSDAKLTKDDGNGEGSGGNISSGISSGPQADITEGSVFGSRNRFG--RRSVGGVANSSPRVIDSRRDAWKKVAAVAA-FGVGEVSKGVPWVKKTAGWGGGKGSSSRRLGTRG----QSKKKLNDSGEIGKETGGQQEAKKGGEPRGSDKPPLVSIQIGGVGGKLPDVQWSVQIQQK-LLKIEDSGWVEVTLEGISLSVSLDPGVGATSLLPLRCSSSTSSPQPL----------------------------GSTTASQSSPVFGEEETDSLSRGSSSPTSTTSAYLPRRTSVLANDGARGEGAGRDLGQAQEGDDRKKDAGNNTTRDAVGDTVAAGDGRTEAGXXSPP--RRSTINVVSSALTKSSNKLRRRLKIRKAASTT------------------------------------------------SFEQEAFFPPASPRDHSDGYVTSPQSTGSQSSLYPEVA------------SKAFLSPSEFVPVRDSPSGGRTNGNSKEASGERNRSSTGVSESGESDKLACSIGHGSYGLLKVMECRCSVGSIKIAVGGSKHDGIYNFLAKGLGDTIRDAXXXXXXXAFTQGVERLVARINDRAVQLWSGSAP-EPKKPAKVVCLAIRAQGVGKGRIEPFVKLRLFDKDGSQVAKRMTEAFSPLVGVSNSS------------------------DKEGMNRNPCWIGLDNDLTLDLPEEGAEDFSLLFEVRHSGTLANSLVGSTNRFTLRAIEA--------------------LVSEKRGENA-----VADPD---LCLDIDTGGKLIVKISVS 3324
WNLE EVE + KDP +S HA +RL +A+ G+YVD Y ALSVLE FGGLLQR+P+LLPVVQTTI+++G TIKISNLNL GV FPRS+IR +++G SLPP+GS VET TPFG+ GRV+ Y KR+HSLCVELL FPL G +YARAF+QPGD V++ ++ K D A S T AA+ A GT+ + L +S+ + + P+ HTRA K L + L Q L R P E+ G A VD AC + G G G G+ D D G T S + V +ST + G A SA SE TGA G+ D G+ R + + PV + L+ G G+ SGG+ + G + D + G + G G +++ +N++ I D A AA F G GV W+ AG GG + R G Q ++++ DS + +E GG++EA P +SI +G V LPDV WSVQ+QQK L++ DSG++ V LEG+SLS+SLDPG G SL SS S P G + P+F P TS+ PR SV A A G G + + EG XX + S +N +S+AL+K + K++RRLK S +E P P + T+P++ S S+ P ++ S F + +EF P+ + + R +G +A E+GE S G + G LKV C C VGSI+I V GSKHDGIYNFLAKGLGDTIRDA AF + + +LV INDR ++WSGSAP KKPA++VC A+RAQG+ KG+ + +VK+RL KDG+Q+ KR T A + + S RNPCW+GLDNDL+++LPEE SL+FEV HSGTLAN+LVGST R T+ IE R A + D D L LD+D+GGKLIV + V+
Sbjct: 92 WNLEQEVELLSKDPEVAKSLLHATERLRGLARVAGVYVDTYMALSVLEFGFGGLLQRLPRLLPVVQTTIQKKGFTIKISNLNLGGVVFPRSDIRFSFQGTSLPPHGSTVETSTPFGR----GRVVRYMKRTHSLCVELLSFPLRSG--QYARAFVQPGDVVVIEPDQDKISDRGGAAVAS-------------TAAAAGAAEGTSASESLAQPPGLLNPDSIFGEGDDESSRPSLHTRAAAKTLLAASSLHQRLQDRXXXXXXXXXXX----XXXXXXXXXXXXXXXXPVESFG--ATVDTYYTPAXXXXXXXXEPACVPAPGDDGVGPGTHVAGDNAAAALPPAADGGMSTGVKPLRSAYA-GGVATSTGPDDEATGISAAAGAKRHARGRSAGSEFATGAGGGDGALDMVDEKRRGSEIIMRRA--------KTRTWPVRAESQELETGSR----------------------GGDASGGSAAEG----GEGDTSPGGIAGGILGSGVWKKAYSAASNAAATAIAVNNDLSASATAAAANFANGG---GVRWMGNRAGDGGRDVGDASRSGDTATVDHQEREEMGDSIGVDEEEGGEREA--------XXXXPYLSITVGNVSCFLPDVNWSVQMQQKRFLRVGDSGYINVWLEGVSLSLSLDPGAGVDSLFG---SSRRPSQTPXXXXXXXXXXXXXXXXXXXXXXXXXGTSGGDNQGAPPRPLF--------------PFVATSSQSPR--SVSAEPSAEGIDGG-SVAERGEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSKWSKLNSMSTALSKGTGKIKRRLKATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIPSTSRERAVTPPLPSAATTA-ATTPEALPSSRSV-PHLSILGDNDADGGSGSLVFATAAEFSPLAAAAARRRGSGLEGDAR-----------EAGELPPSGIS-GGSADGFLKVTACSCKVGSIRIEVDGSKHDGIYNFLAKGLGDTIRDAVREAVEKAFAEEIGKLVEGINDRIAEIWSGSAPVSKKKPARLVCAAVRAQGLPKGKTDLYVKVRLIKKDGTQLEKRSTAAVGAVATSAAMSIPXXXXXXXXXXXXXXXXXXXXXXXXXAPARNPCWVGLDNDLSMNLPEEDPGRLSLVFEVWHSGTLANALVGSTRRVTMSEIEPPSXXXXXXXXXXXXXXXXXXXXXXXRDGGATPATVLRDSDSNTLRLDLDSGGKLIVSVRVT 1267
BLAST of mRNA_H-elongata_contig151.3387.1 vs. uniprot
Match: A0A6H5JK16_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK16_9PHAE) HSP 1 Score: 357 bits (917), Expect = 2.050e-98 Identity = 403/1266 (31.83%), Postives = 544/1266 (42.97%), Query Frame = 1
Query: 37 DPVAVQSFRHAVKRLAKMAKAGGIYVDAYFALSVLEVAFGGLLQRIPKLLPVVQTTIKRRGLTIKISNLNLAGVHFPRSEIRLAYKGISLPPNGSIVETKTPFGKWRRPGRVLYYKKRSHSLCVELLRFPLSKGRRKYARAFIQPGDAVLVVSER-KTVDSAAAVPTSPRDTPSTVIPPVPTVAASVANSGTAVGD--------LFPTESVTEASSSDQNSPTHTRAGGKMRLVLA-LQQHLPGRFRQMGADDGKRRRQRWSLSGANSQPSPVRRAPSEAEGGLARVDPSLADGDVRVTNG------ACASSSG--GXGSGSDSLAD-------VHDDRGQCTNAAEFTSKRSEPSVVSSTAREQLGEGSRDGWDPSGVAMSDSAASEGLTGAENPTGSRQETDTGLTGARQPFRLSPLFPLSPLSRKPSP---------------VDISPECLDAG--GSLASSNGRNISISSDAK-LTKDDGNGEGSGGNISSGISSGPQADITEGSVFGSRNRFG--RRSVGGVANSSPRVIDSRRD-AWKKVAAVAAFGVGEVSKGVPWVKKTAGWGGGKGSSSRRLGTRGQSKKKLNDSGEIGKETGGQQEAKKGGEPRGSDKPPLVSIQIGGVGGKLPDVQWSVQIQQK-LLKIEDSGWVEVTLEGISLSVSLDPGVGATSLL---------PLRCSSSTSSPQPLGSTTASQSSPVFGEEETDSLSRGSSSPTSTTSAYLPRRTSVLANDGARGEGAGRDLGQAQEGDDRKKDAGNNTTRDAVGDTVAAGDGRTEAGXXSPP----RRSTINVVSSALTKSSNKLRRRLKI-------------------------RKAASTTSFEQ-EAFFPPASPRDHSDGY----VTSPQSTGSQSSLYPEVASKAF--------LSPSEFVPVRDSPSGGRTNGNSKE--------------ASGERNRSSTGVSESGESDKLACS--IGHGSYGLLKVMECRCSVGSIKIAVGGSKHDGIYNFLAKGLGDTIRDAXXXXXXXAFTQGVERLVARINDRAVQLWSGSAPEPKKPAKVVCLAIRAQGVGKGRIEPFVKLRLFDKDGSQVAKRMTEAFSPLVGVSNSS------------------------DKEGMNRNPCWIGLDNDLTLDLPEEGAEDFSLLFEVRHSGTLANSLVGSTNRFTLRAIEA-----------------------LVSEKRGENA-----VADPDL---CLDIDTGGKLIVKISVSG 3327
DP ++S HA +RL +A+ G+YVD Y ALSVLE FGGLLQR+PKLLPVVQTTI+++G TIK+SNLNL GV FPRS+IR +++G SLPP+GS VET TPFG+ GRV+ + R+HSLCVELL FPL G +YARAF+QPGD V++ ++ K D S T AA+ A GT+ + L P E HTRA K L + L Q L R P ++ G VD AC + G G G G+ AD D G S + V ++T + G A SA SE +GA G+ D L G+ R P PLS++P P ++P + G + R + ++++ L +G+ GG+ + G ++D G + G G +R+ N++ I D + A+VA F G GV W+ G GG + R G + + + E+G G +E +SI +G V LP V WSVQ QQK L++ DSG++ V LEG+SLS+SLDPG G SL P +P+ L T+A+ G + R P TS+ PR SV A A G G A+ G XX + ST+ +S+AL+K + K++RR K + TSF+ +FF P SP D SD +S ST ++ P + S A L S VP S +G S A+ R R S + GE+ ++ S G+ LKV C C VGSI+I V GSKHDGIYNFLAKGLGDTIRDA AF + + +LV INDR ++WSGS P KK +VVC A+RAQ + KG+ + +VK+RL +DG+Q+ KR T A + + S RNPCW+GLDNDL+++LPEE + SL+FEV HSGTLAN+LVGST R T+ IE R A + D DL LD+D+GGKL+VK++V G
Sbjct: 36 DPEVLKSLLHATERLRGLARVAGVYVDKYMALSVLEFGFGGLLQRLPKLLPVVQTTIQKKGFTIKVSNLNLGGVVFPRSDIRFSFQGTSLPPHGSTVETNTPFGR----GRVVRHMNRTHSLCVELLSFPLRSG--QYARAFVQPGDVVVIEPDQDKNSDGGGPAIAS-------------TAAAAGAAEGTSASESLAQPTGLLNPDSIFGEGDDESPRPSLHTRAAAKTLLAASSLHQRLQDRXXXXXXXXXXX----XXXXXXXXXXXXXXXGPVDSFG--VTVDTYYTPAXXXXXXXXXXXEPACVPAPGDDGVGPGTHVAADNAAAALPPAADDGMLAGVEPLRSAFA-GGVATATGPDDKATGISAAARAKRHARGRSAGSEFASGAREGDGALDIVDEKLRGSEIIVRRKP-----PLSQRPLPPPXXXXXXXXXXXATATVAPADVHDGIAAGVPCRKSRTWPVWAESQELETSSRSGDACGGSATEG----GESDTNPGGIAGGILSSGVWKRAYSAATNAAATAIAVNTDLSASATASVANFANGG---GVRWMGNRVGDGGRDAGDASRRGDTATVEHQERE--EMGNSIGVDEEXXXX--XXXXXXXXYLSITLGNVSCFLPKVNWSVQTQQKRFLRVGDSGYINVRLEGVSLSLSLDPGAGVCSLFGSSRRPSQTPXXXXXXPVAPRHLPGTSAAAPVGTSGGDNXXXXXRPLL-PFVATSSQAPR--SVSAEPSAEGTDGG---SVAERGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSKWSTLKSMSTALSKGTGKIKRRWKATXXXXXXXXXXXXXXXXXXXLQRTGHHQPAPTSFQPASSFFHPPSPIDSSDKSDAFSSSSVPSTSRGRAITPTLPSAATTAAPTPEALPSSRSVPRLSSLGDNDADGGSGSLVFATAAEFSPLAAAAAARRRGSGLEGDDGEAGEVTPSGISAGGTDEFLKVTACSCKVGSIRIDVDGSKHDGIYNFLAKGLGDTIRDAVREAVEKAFAEEIGKLVEGINDRIAEIWSGSPPVSKK-FRVVCAAVRAQDLPKGKTDLYVKVRLIKQDGTQLEKRSTAAVGAVATSAAMSIPXXXXXXXXXXXXXXXXXXXXXXXXXAPARNPCWVGLDNDLSMNLPEEDPDGMSLVFEVWHSGTLANALVGSTRRVTMSEIEPPSPAXXXXXXXXXXXXXXXXXXXXXXXXRDGGATPATVLKDSDLNTLWLDLDSGGKLMVKLAVFG 1252 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig151.3387.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig151.3387.1 >prot_H-elongata_contig151.3387.1 ID=prot_H-elongata_contig151.3387.1|Name=mRNA_H-elongata_contig151.3387.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=1085bp MAKAGGIYVDAYFALSVLEVAFGGLLQRIPKLLPVVQTTIKRRGLTIKISback to top mRNA from alignment at H-elongata_contig151:3843..25072- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig151.3387.1 ID=mRNA_H-elongata_contig151.3387.1|Name=mRNA_H-elongata_contig151.3387.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=21230bp|location=Sequence derived from alignment at H-elongata_contig151:3843..25072- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig151:3843..25072- >mRNA_H-elongata_contig151.3387.1 ID=mRNA_H-elongata_contig151.3387.1|Name=mRNA_H-elongata_contig151.3387.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=6510bp|location=Sequence derived from alignment at H-elongata_contig151:3843..25072- (Himanthalia elongata Himel1 dioecious)back to top |