mRNA_H-elongata_contig150987.3386.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig150987.3386.1
Unique NamemRNA_H-elongata_contig150987.3386.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig150987.3386.1 vs. uniprot
Match: A0A6H5KMQ7_9PHAE (PlsC domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KMQ7_9PHAE)

HSP 1 Score: 130 bits (326), Expect = 6.140e-35
Identity = 58/110 (52.73%), Postives = 78/110 (70.91%), Query Frame = 1 
Query:    1 QVWFSLAMMGGLAINWLACVSIHALVRELPTAQLWCCCFNHYLFRYMLFISCPWIRIHPPPAEDIERLMNREKVCVLMNHTSFFDSIIFVATIPANVIWRYKALVKSGLF 330
              WF   +  GL I+W  CV I  ++ +   AQ  CC ++HY+FR  +  SCPWIR+  PP E++ RL+NRE+VCVLMNHTSF DS++FVAT P+N+IWRY+ L+KS LF
Sbjct:   11 HTWFGACLTWGLIIDWAGCVVITTILPD-GQAQRRCCQWSHYVFRCFMLSSCPWIRVSRPPVEEVTRLLNRERVCVLMNHTSFGDSVMFVATTPSNIIWRYRTLMKSTLF 119
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BLAST of mRNA_H-elongata_contig150987.3386.1 vs. uniprot
Match: A0A835Z6S5_9STRA (Acyltransferase-like protein, copy 2 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6S5_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 8.490e-23
Identity = 43/113 (38.05%), Postives = 69/113 (61.06%), Query Frame = 1 
Query:    1 QVWFSLAMMGGLAINWLACVSIHALVR-ELPTAQLWCCCFNHYLFRYMLFISCPWIRIHPPPAEDIERLMNREKVCVLMNHTSFFDSIIFVATIPANVIWRYKALVKSGLFKV 336
            + WF    +    + W  C+ +  +V   L   +   C   HY FRYM+ + CPWIR+  PPAE+  R++ R++V V +NHTSF DS++FVA +P +V++RY+ L+K  L ++
Sbjct:   11 KFWFGTCTLVCFILTWAGCMVLRYIVPGTLQQKEARVCTLCHYTFRYMIMLPCPWIRLKVPPAEEWRRILGRDRVFVALNHTSFMDSVLFVACVPGDVLYRYRTLMKKELLEL 123
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig150987.3386.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KMQ7_9PHAE6.140e-3552.73PlsC domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A835Z6S5_9STRA8.490e-2338.05Acyltransferase-like protein, copy 2 n=1 Tax=Tribo... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig150987contigH-elongata_contig150987:990..1346 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score127.1
Seed ortholog evalue5.2e-27
Seed eggNOG ortholog2880.D7FWP2
EggNOG free text desc.Acyltransferase
EggNOG OGs2DZHH@1,2S71D@2759
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionPhospholipid/glycerol acyltransferase
Ec32 orthologEc-06_001400.1
Exons1
Model size357
Cds size336
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929892.6097572-CDS-H-elongata_contig150987:989..13251622929892.6097572-CDS-H-elongata_contig150987:989..1325Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig150987 990..1325 -
1691679197.890961-CDS-H-elongata_contig150987:989..13251691679197.890961-CDS-H-elongata_contig150987:989..1325Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig150987 990..1325 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929892.628217-UTR-H-elongata_contig150987:1325..13461622929892.628217-UTR-H-elongata_contig150987:1325..1346Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig150987 1326..1346 -
1691679197.9013638-UTR-H-elongata_contig150987:1325..13461691679197.9013638-UTR-H-elongata_contig150987:1325..1346Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig150987 1326..1346 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig150987.3386.1prot_H-elongata_contig150987.3386.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig150987 990..1325 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig150987.3386.1

>prot_H-elongata_contig150987.3386.1 ID=prot_H-elongata_contig150987.3386.1|Name=mRNA_H-elongata_contig150987.3386.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=112bp
MMGGLAINWLACVSIHALVRELPTAQLWCCCFNHYLFRYMLFISCPWIRI
HPPPAEDIERLMNREKVCVLMNHTSFFDSIIFVATIPANVIWRYKALVKS
GLFKVKNSVRS*
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mRNA from alignment at H-elongata_contig150987:990..1346-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig150987.3386.1 ID=mRNA_H-elongata_contig150987.3386.1|Name=mRNA_H-elongata_contig150987.3386.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=357bp|location=Sequence derived from alignment at H-elongata_contig150987:990..1346- (Himanthalia elongata Himel1 dioecious)
CAGGTATGGTTTAGCCTGGCGATGATGGGGGGACTCGCAATCAACTGGTT
GGCCTGCGTCAGCATTCATGCCCTAGTGCGGGAGTTGCCGACTGCACAAC
TCTGGTGCTGCTGCTTCAACCACTACCTGTTTCGGTACATGCTTTTCATA
TCGTGCCCCTGGATACGAATCCACCCACCTCCGGCAGAAGATATCGAGCG
GCTGATGAACAGGGAGAAGGTTTGCGTGCTGATGAACCACACCAGCTTCT
TCGACTCGATCATTTTCGTGGCCACAATTCCGGCGAATGTTATCTGGCGA
TACAAGGCCCTTGTAAAGAGCGGCCTCTTTAAGGTGAAGAATTCCGTTCG
CTCTTGA
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Coding sequence (CDS) from alignment at H-elongata_contig150987:990..1346-

>mRNA_H-elongata_contig150987.3386.1 ID=mRNA_H-elongata_contig150987.3386.1|Name=mRNA_H-elongata_contig150987.3386.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=672bp|location=Sequence derived from alignment at H-elongata_contig150987:990..1346- (Himanthalia elongata Himel1 dioecious)
ATGATGGGGGGACTCGCAATCAACTGGTTGGCCTGCGTCAGCATTCATGC
CCTAGTGCGGGAGTTGCCGACTGCACAACTCTGGTGCTGCTGCTTCAACC
ACTACCTGTTTCGGTACATGCTTTTCATATCGTGCCCCTGGATACGAATC
CACCCACCTCCGGCAGAAGATATCGAGCGGCTGATGAACAGGGAGAAGGT
TTGCGTGCTGATGAACCACACCAGCTTCTTCGACTCGATCATTTTCGTGG
CCACAATTCCGGCGAATGTTATCTGGCGATACAAGGCCCTTGTAAAGAGC
GGCCTCTTTAAGGTGAAGAATTCCGTTCGCTCTTGAATGATGGGGGGACT
CGCAATCAACTGGTTGGCCTGCGTCAGCATTCATGCCCTAGTGCGGGAGT
TGCCGACTGCACAACTCTGGTGCTGCTGCTTCAACCACTACCTGTTTCGG
TACATGCTTTTCATATCGTGCCCCTGGATACGAATCCACCCACCTCCGGC
AGAAGATATCGAGCGGCTGATGAACAGGGAGAAGGTTTGCGTGCTGATGA
ACCACACCAGCTTCTTCGACTCGATCATTTTCGTGGCCACAATTCCGGCG
AATGTTATCTGGCGATACAAGGCCCTTGTAAAGAGCGGCCTCTTTAAGGT
GAAGAATTCCGTTCGCTCTTGA
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