mRNA_H-elongata_contig150885.3384.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig150885.3384.1
Unique NamemRNA_H-elongata_contig150885.3384.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig150885.3384.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig150885contigH-elongata_contig150885:297..971 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size503
Cds size264
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig150885.3384.1prot_H-elongata_contig150885.3384.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig150885 527..962 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929892.3796885-UTR-H-elongata_contig150885:296..5261622929892.3796885-UTR-H-elongata_contig150885:296..526Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig150885 297..526 -
1691679197.766705-UTR-H-elongata_contig150885:296..5261691679197.766705-UTR-H-elongata_contig150885:296..526Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig150885 297..526 -
1622929892.4154022-UTR-H-elongata_contig150885:962..9711622929892.4154022-UTR-H-elongata_contig150885:962..971Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig150885 963..971 -
1691679197.8053741-UTR-H-elongata_contig150885:962..9711691679197.8053741-UTR-H-elongata_contig150885:962..971Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig150885 963..971 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929892.3902855-CDS-H-elongata_contig150885:526..7061622929892.3902855-CDS-H-elongata_contig150885:526..706Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig150885 527..706 -
1691679197.7775762-CDS-H-elongata_contig150885:526..7061691679197.7775762-CDS-H-elongata_contig150885:526..706Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig150885 527..706 -
1622929892.4020455-CDS-H-elongata_contig150885:878..9621622929892.4020455-CDS-H-elongata_contig150885:878..962Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig150885 879..962 -
1691679197.7892158-CDS-H-elongata_contig150885:878..9621691679197.7892158-CDS-H-elongata_contig150885:878..962Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig150885 879..962 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig150885.3384.1

>prot_H-elongata_contig150885.3384.1 ID=prot_H-elongata_contig150885.3384.1|Name=mRNA_H-elongata_contig150885.3384.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=88bp
MPQSSRRKGGSRKKGATSNHSKKDTSQKAGLKARFMTDKLVGQRLSALQG
LLQTCLTPRQSRGAVDSEKARTAAFVKTKSALVKFAK*
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mRNA from alignment at H-elongata_contig150885:297..971-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig150885.3384.1 ID=mRNA_H-elongata_contig150885.3384.1|Name=mRNA_H-elongata_contig150885.3384.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=675bp|location=Sequence derived from alignment at H-elongata_contig150885:297..971- (Himanthalia elongata Himel1 dioecious)
CAGGTTATCATGCCGCAATCTTCCCGGCGCAAGGGCGGAAGTCGCAAGAA
GGGCGCTACCAGCAACCACAGTAAGAAGGACACTTCGCAGAAGGTAAAGG
GAGCTTTGACTTTGTATCCGTTACTTATGTTTCGTTCGTTCATGTTTAGT
CTTAGGTGTTGTCGTTTGACCTCTGCCGGTAGAGCTCTCCTGACGTACAT
GCATGACAGTGCGGCTGCGACTCTGCTCTTGCGGCCGTCCTTGTCCGTCG
ATATTCGTTTCTCAGGCTGGTTTAAAGGCACGGTTTATGACCGACAAACT
CGTCGGTCAGCGACTTTCAGCGCTTCAAGGCCTCTTGCAAACATGTCTCA
CCCCTCGGCAAAGTCGTGGCGCTGTGGACTCCGAAAAGGCGCGGACGGCC
GCCTTTGTGAAGACGAAGTCTGCGCTCGTCAAGTTCGCCAAGTAAGAATG
CTCTTTCGAGGCCGTCCTTGGATGCCAGCGTGGTGAACTACTTCCCGGCG
TGTCGGAGGATGATGCCGAGGTAGGGTACGCCCATTTACACATTATGTAG
TACAGCTGCATGTGTAATTTCTCTACTACCTTAAGCAGCTGACGAAACTT
TCGCTACAGTCAGTCACGGCGTATTCCACAGTCGACCCGACGCACTGGAC
CCGGGAGGTAGCAGTTTAGTGTCGC
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Coding sequence (CDS) from alignment at H-elongata_contig150885:297..971-

>mRNA_H-elongata_contig150885.3384.1 ID=mRNA_H-elongata_contig150885.3384.1|Name=mRNA_H-elongata_contig150885.3384.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=528bp|location=Sequence derived from alignment at H-elongata_contig150885:297..971- (Himanthalia elongata Himel1 dioecious)
ATGCCGCAATCTTCCCGGCGCAAGGGCGGAAGTCGCAAGAAGGGCGCTAC
CAGCAACCACAGTAAGAAGGACACTTCGCAGAAGATGCCGCAATCTTCCC
GGCGCAAGGGCGGAAGTCGCAAGAAGGGCGCTACCAGCAACCACAGTAAG
AAGGACACTTCGCAGAAGGCTGGTTTAAAGGCACGGTTTATGACCGACAA
ACTCGTCGGTCAGCGACTTTCAGCGCTTCAAGGCCTCTTGCAAACATGTC
TCACCCCTCGGCAAAGTCGTGGCGCTGTGGACTCCGAAAAGGCGCGGACG
GCCGCCTTTGTGAAGACGAAGTCTGCGCTCGTCAAGTTCGCCAAGTAAGC
TGGTTTAAAGGCACGGTTTATGACCGACAAACTCGTCGGTCAGCGACTTT
CAGCGCTTCAAGGCCTCTTGCAAACATGTCTCACCCCTCGGCAAAGTCGT
GGCGCTGTGGACTCCGAAAAGGCGCGGACGGCCGCCTTTGTGAAGACGAA
GTCTGCGCTCGTCAAGTTCGCCAAGTAA
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