mRNA_H-elongata_contig150772.3382.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig150772.3382.1
Unique NamemRNA_H-elongata_contig150772.3382.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig150772.3382.1 vs. uniprot
Match: A0A835YSZ4_9STRA (Ribonucleoside-diphosphate reductase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSZ4_9STRA)

HSP 1 Score: 158 bits (400), Expect = 3.390e-43
Identity = 77/91 (84.62%), Postives = 84/91 (92.31%), Query Frame = 1 
Query:    1 MSEKWFIHASPTLFHAGTSHPQLSSCFLLPVKEDSIVGIYDTLKQCASISKSAGGIGLSVHSIRARGSYIRGTKGFSNGLVPMLRVFDATA 273
            MS K+FIHASPTLFHAGT+HPQLSSCFLL + EDSIVGIYDTLK+CA ISK AGGIGLSVH IRA+G+YI+GTKG SNGLVPMLRVFDATA
Sbjct:  193 MSRKFFIHASPTLFHAGTAHPQLSSCFLLTMTEDSIVGIYDTLKRCAQISKGAGGIGLSVHDIRAKGTYIKGTKGTSNGLVPMLRVFDATA 283
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BLAST of mRNA_H-elongata_contig150772.3382.1 vs. uniprot
Match: A0A7S0GQ21_9EUKA (Ribonucleoside-diphosphate reductase (Fragment) n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0GQ21_9EUKA)

HSP 1 Score: 153 bits (387), Expect = 1.050e-42
Identity = 77/91 (84.62%), Postives = 81/91 (89.01%), Query Frame = 1 
Query:    1 MSEKWFIHASPTLFHAGTSHPQLSSCFLLPVKEDSIVGIYDTLKQCASISKSAGGIGLSVHSIRARGSYIRGTKGFSNGLVPMLRVFDATA 273
            MS K F+HASPTLFHAGT  PQLSSCFLLPVK DSI GIYDTLK CA+ISKSAGGIGLSV +IRA+GSYIRGT G SNGLVPMLRVFDATA
Sbjct:  245 MSSKAFLHASPTLFHAGTRTPQLSSCFLLPVKSDSIQGIYDTLKSCAAISKSAGGIGLSVQNIRAKGSYIRGTNGVSNGLVPMLRVFDATA 335
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BLAST of mRNA_H-elongata_contig150772.3382.1 vs. uniprot
Match: K8Z7A2_NANGC (Ribonucleoside-diphosphate reductase n=3 Tax=Monodopsidaceae TaxID=425072 RepID=K8Z7A2_NANGC)

HSP 1 Score: 155 bits (391), Expect = 6.820e-42
Identity = 75/91 (82.42%), Postives = 82/91 (90.11%), Query Frame = 1 
Query:    1 MSEKWFIHASPTLFHAGTSHPQLSSCFLLPVKEDSIVGIYDTLKQCASISKSAGGIGLSVHSIRARGSYIRGTKGFSNGLVPMLRVFDATA 273
            MS KWFIHASPTLFHAGT  PQ+SSCFLL ++ DSIVGIYDTLKQCA ISK+AGGIGLSVH+IRA G+YI+GTKG SNGLVPMLRVFD TA
Sbjct:  322 MSNKWFIHASPTLFHAGTRFPQMSSCFLLAMQADSIVGIYDTLKQCAVISKAAGGIGLSVHNIRAHGAYIKGTKGTSNGLVPMLRVFDVTA 412
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BLAST of mRNA_H-elongata_contig150772.3382.1 vs. uniprot
Match: A0A0A9URS9_ARUDO (Ribonucleoside-diphosphate reductase n=1 Tax=Arundo donax TaxID=35708 RepID=A0A0A9URS9_ARUDO)

HSP 1 Score: 143 bits (361), Expect = 7.740e-42
Identity = 69/90 (76.67%), Postives = 80/90 (88.89%), Query Frame = 1 
Query:    4 SEKWFIHASPTLFHAGTSHPQLSSCFLLPVKEDSIVGIYDTLKQCASISKSAGGIGLSVHSIRARGSYIRGTKGFSNGLVPMLRVFDATA 273
            S++WF HASPTLF+AGT  PQLSSCFL+ +K+DSI GIYDTLK+CA ISKSAGGIG+SVH+IRA GSYIRGT G SNG+VPMLRVF+ TA
Sbjct:   25 SQRWFTHASPTLFNAGTPRPQLSSCFLICMKDDSIEGIYDTLKECAVISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTA 114
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BLAST of mRNA_H-elongata_contig150772.3382.1 vs. uniprot
Match: A0A6J4JGJ0_9BACT (Ribonucleoside-diphosphate reductase (Fragment) n=1 Tax=uncultured Adhaeribacter sp. TaxID=448109 RepID=A0A6J4JGJ0_9BACT)

HSP 1 Score: 145 bits (366), Expect = 1.170e-41
Identity = 71/91 (78.02%), Postives = 79/91 (86.81%), Query Frame = 1 
Query:    1 MSEKWFIHASPTLFHAGTSHPQLSSCFLLPVKEDSIVGIYDTLKQCASISKSAGGIGLSVHSIRARGSYIRGTKGFSNGLVPMLRVFDATA 273
            MSEKWF HA+PTLF+AG+  PQLSSCFLL +KEDSI GIYDTLK CA IS+SAGGIGLS HSIRA GSYI+GT G SNGLVPML+VF+ TA
Sbjct:   90 MSEKWFTHATPTLFNAGSPKPQLSSCFLLTMKEDSIAGIYDTLKNCAMISQSAGGIGLSAHSIRATGSYIKGTNGTSNGLVPMLKVFNDTA 180
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BLAST of mRNA_H-elongata_contig150772.3382.1 vs. uniprot
Match: H0YCY7_HUMAN (Ribonucleoside-diphosphate reductase (Fragment) n=3 Tax=Hominidae TaxID=9604 RepID=H0YCY7_HUMAN)

HSP 1 Score: 140 bits (353), Expect = 3.580e-41
Identity = 69/91 (75.82%), Postives = 79/91 (86.81%), Query Frame = 1 
Query:    1 MSEKWFIHASPTLFHAGTSHPQLSSCFLLPVKEDSIVGIYDTLKQCASISKSAGGIGLSVHSIRARGSYIRGTKGFSNGLVPMLRVFDATA 273
            +SE+WF HASPTLF+AGT+ PQLSSCFLL +K+DSI GIYDTLKQCA ISKSAGGIG++V  IRA GSYI GT G SNGLVPMLRV++ TA
Sbjct:    6 LSERWFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIEGIYDTLKQCALISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTA 96
[Close]
BLAST of mRNA_H-elongata_contig150772.3382.1 vs. uniprot
Match: A0A1Y3BMA8_EURMA (Ribonucleoside-diphosphate reductase (Fragment) n=1 Tax=Euroglyphus maynei TaxID=6958 RepID=A0A1Y3BMA8_EURMA)

HSP 1 Score: 143 bits (361), Expect = 8.880e-41
Identity = 69/91 (75.82%), Postives = 78/91 (85.71%), Query Frame = 1 
Query:    1 MSEKWFIHASPTLFHAGTSHPQLSSCFLLPVKEDSIVGIYDTLKQCASISKSAGGIGLSVHSIRARGSYIRGTKGFSNGLVPMLRVFDATA 273
            +SE WF HASPTLF+AGT  PQLSSCFLL + +DSI GIYDTLKQCA ISKSAGGIGL+VH IR+ GSYI GT GFSNGL+PMLRV++ TA
Sbjct:   24 ISENWFTHASPTLFNAGTKRPQLSSCFLLTMSDDSIEGIYDTLKQCAIISKSAGGIGLNVHCIRSSGSYISGTNGFSNGLIPMLRVYNHTA 114
[Close]
BLAST of mRNA_H-elongata_contig150772.3382.1 vs. uniprot
Match: S7V4S9_9BACT (Ribonucleoside-diphosphate reductase n=1 Tax=Cyclobacterium qasimii M12-11B TaxID=641524 RepID=S7V4S9_9BACT)

HSP 1 Score: 147 bits (370), Expect = 1.220e-40
Identity = 69/91 (75.82%), Postives = 81/91 (89.01%), Query Frame = 1 
Query:    1 MSEKWFIHASPTLFHAGTSHPQLSSCFLLPVKEDSIVGIYDTLKQCASISKSAGGIGLSVHSIRARGSYIRGTKGFSNGLVPMLRVFDATA 273
            +S+KWF HA+PTLF+AGT  PQLSSCFLL +K+DSI GIYDTLKQCA IS+SAGGIGLS+H++RA+GSYIRGT G SNG+VPMLR FD TA
Sbjct:  165 LSQKWFTHATPTLFNAGTPKPQLSSCFLLTMKDDSIDGIYDTLKQCAKISQSAGGIGLSIHNVRAKGSYIRGTNGVSNGIVPMLRNFDMTA 255
[Close]
BLAST of mRNA_H-elongata_contig150772.3382.1 vs. uniprot
Match: A0A6A6KWY1_HEVBR (Ribonucleoside-diphosphate reductase n=4 Tax=Pentapetalae TaxID=1437201 RepID=A0A6A6KWY1_HEVBR)

HSP 1 Score: 144 bits (364), Expect = 1.480e-40
Identity = 69/91 (75.82%), Postives = 81/91 (89.01%), Query Frame = 1 
Query:    1 MSEKWFIHASPTLFHAGTSHPQLSSCFLLPVKEDSIVGIYDTLKQCASISKSAGGIGLSVHSIRARGSYIRGTKGFSNGLVPMLRVFDATA 273
            MS++WF HASPTLF+AGT  PQLSSCFL+ +K+DSI GIYDTLK+CA ISKSAGGIG+S+H+IRA GSYIRGT G SNG+VPMLRVF+ TA
Sbjct:  193 MSQRWFTHASPTLFNAGTPRPQLSSCFLVCMKDDSIEGIYDTLKECAVISKSAGGIGVSIHNIRATGSYIRGTNGTSNGIVPMLRVFNDTA 283
[Close]
BLAST of mRNA_H-elongata_contig150772.3382.1 vs. uniprot
Match: A0A7C5LYA2_9BACT (Ribonucleoside-diphosphate reductase (Fragment) n=1 Tax=Flammeovirgaceae bacterium TaxID=2026740 RepID=A0A7C5LYA2_9BACT)

HSP 1 Score: 144 bits (363), Expect = 1.540e-40
Identity = 69/91 (75.82%), Postives = 79/91 (86.81%), Query Frame = 1 
Query:    1 MSEKWFIHASPTLFHAGTSHPQLSSCFLLPVKEDSIVGIYDTLKQCASISKSAGGIGLSVHSIRARGSYIRGTKGFSNGLVPMLRVFDATA 273
            +SEKWF HA+PTLF+A T  PQ+SSCFLL +KEDSI GIYDTLKQCA IS+SAGGIGLS+H+IRA GSYI+GT G SNG+VPMLR FD TA
Sbjct:  193 LSEKWFTHATPTLFNAATPKPQMSSCFLLTMKEDSIDGIYDTLKQCAKISQSAGGIGLSIHNIRATGSYIKGTNGVSNGIVPMLRNFDMTA 283
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig150772.3382.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YSZ4_9STRA3.390e-4384.62Ribonucleoside-diphosphate reductase n=1 Tax=Tribo... [more]
A0A7S0GQ21_9EUKA1.050e-4284.62Ribonucleoside-diphosphate reductase (Fragment) n=... [more]
K8Z7A2_NANGC6.820e-4282.42Ribonucleoside-diphosphate reductase n=3 Tax=Monod... [more]
A0A0A9URS9_ARUDO7.740e-4276.67Ribonucleoside-diphosphate reductase n=1 Tax=Arund... [more]
A0A6J4JGJ0_9BACT1.170e-4178.02Ribonucleoside-diphosphate reductase (Fragment) n=... [more]
H0YCY7_HUMAN3.580e-4175.82Ribonucleoside-diphosphate reductase (Fragment) n=... [more]
A0A1Y3BMA8_EURMA8.880e-4175.82Ribonucleoside-diphosphate reductase (Fragment) n=... [more]
S7V4S9_9BACT1.220e-4075.82Ribonucleoside-diphosphate reductase n=1 Tax=Cyclo... [more]
A0A6A6KWY1_HEVBR1.480e-4075.82Ribonucleoside-diphosphate reductase n=4 Tax=Penta... [more]
A0A7C5LYA2_9BACT1.540e-4075.82Ribonucleoside-diphosphate reductase (Fragment) n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig150772contigH-elongata_contig150772:394..1376 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score150.6
Seed ortholog evalue3.5e-34
Seed eggNOG ortholog1048983.EL17_14560
Preferred namenrdA
KEGG rclassRC00613
KEGG koko:K00525
KEGG ReactionR02017,R02018,R02019,R02024
KEGG Pathwayko00230,ko00240,ko01100,map00230,map00240,map01100
KEGG ModuleM00053
GOsGO:0000166,GO:0003674,GO:0003824,GO:0004748,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005971,GO:0006139,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009165,GO:0009262,GO:0009263,GO:0009987,GO:0016491,GO:0016725,GO:0016728,GO:0018130,GO:0019438,GO:0019637,GO:0032991,GO:0034641,GO:0034654,GO:0036094,GO:0042802,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044445,GO:0044464,GO:0046483,GO:0055086,GO:0055114,GO:0061731,GO:0071704,GO:0090407,GO:0097159,GO:1901135,GO:1901137,GO:1901265,GO:1901293,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902494,GO:1990204
EggNOG free text desc.Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
EggNOG OGs47JEH@768503,4NEHQ@976,COG0209@1,COG0209@2
EC1.17.4.1
COG Functional cat.F
Best tax levelCytophagia
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03400
Hectar predicted targeting categoryother localisation
Exons2
Model size275
Cds size273
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929892.259068-CDS-H-elongata_contig150772:393..5281622929892.259068-CDS-H-elongata_contig150772:393..528Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig150772 394..528 +
1691679197.7288058-CDS-H-elongata_contig150772:393..5281691679197.7288058-CDS-H-elongata_contig150772:393..528Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig150772 394..528 +
1622929892.2709477-CDS-H-elongata_contig150772:1238..13761622929892.2709477-CDS-H-elongata_contig150772:1238..1376Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig150772 1239..1376 +
1691679197.7419758-CDS-H-elongata_contig150772:1238..13761691679197.7419758-CDS-H-elongata_contig150772:1238..1376Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig150772 1239..1376 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig150772.3382.1prot_H-elongata_contig150772.3382.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig150772 394..1376 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig150772.3382.1

>prot_H-elongata_contig150772.3382.1 ID=prot_H-elongata_contig150772.3382.1|Name=mRNA_H-elongata_contig150772.3382.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=91bp
MSEKWFIHASPTLFHAGTSHPQLSSCFLLPVKEDSIVGIYDTLKQCASIS
KSAGGIGLSVHSIRARGSYIRGTKGFSNGLVPMLRVFDATA
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mRNA from alignment at H-elongata_contig150772:394..1376+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig150772.3382.1 ID=mRNA_H-elongata_contig150772.3382.1|Name=mRNA_H-elongata_contig150772.3382.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=983bp|location=Sequence derived from alignment at H-elongata_contig150772:394..1376+ (Himanthalia elongata Himel1 dioecious)
ATGTCCGAGAAGTGGTTCATCCACGCGTCGCCGACGCTCTTCCACGCCGG
CACGTCCCACCCGCAGCTGTCAAGCTGTTTCCTCCTCCCCGTGAAGGAGG
ATAGCATCGTCGGTATCTACGACACGCTCAAGCAGGTACATGCCGCGCGA
TGCCGTGATGTGCGGCGCCTAATACATGAATACAGCGCAGCATTATCAAA
AGCGCGCTATGCAAATTCGCCGTTGTTCGGGTGGAGGCTAAAGTTGCGGC
TACGGCTGCGGCTGTCGCAGGCTGAAACCCAAGCTGCGTATGTTTGGAGC
CATATTTTCTATCTTTGAACCGTATTTTCTAATTTTGATGAGCTGGTTCG
GTTTTTTACTTTTAGTTTGTTTGATGTCTAAACATTTAATTTATATTTAC
TAGAGTATAGTATGGGGGGGAGAGGGGAAAGAAGGCGGTCAAAAGGTTTT
GAGGTGTATGCTGTATTTTCCCCTTTCCACTGCGAATCATAAACGACATC
ATCATAGTTTCAAAAATGTGTTCCTTAAGGCTGTTGGACTCGAATTGAGA
TTTCTGTTATAACTCCGCCGCGCGTCGGTAACAAAGAGAGTCGGGTTTCA
GTCTGAAAAGTTGGGATTTTTTACTTACCTCGCCTTCTCCACCCCACCCC
TCTGATTTAACAGCTAACGCATGCAAAACTTGAGTACGCCCCCCCCTCCC
CCCTCTCCCCTTTTCCCTTCCATCGCCAAGAAATATTATGGTTCTTCGAC
CAAAGAAACGCCTACGTGTTTTCCCCTCTGCGGGCGGCATCACTGTAACG
CCTCGTTGAACCGAAACACCTTTTCTTTCTTAATTATTTTTCCAGTGCGC
CAGCATCAGCAAGAGCGCCGGAGGTATCGGACTGAGCGTCCACTCCATCC
GCGCCAGGGGGAGCTACATTCGAGGAACCAAGGGCTTCTCCAACGGCCTC
GTGCCAATGCTTCGAGTTTTTGACGCCACCGCC
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Coding sequence (CDS) from alignment at H-elongata_contig150772:394..1376+

>mRNA_H-elongata_contig150772.3382.1 ID=mRNA_H-elongata_contig150772.3382.1|Name=mRNA_H-elongata_contig150772.3382.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=546bp|location=Sequence derived from alignment at H-elongata_contig150772:394..1376+ (Himanthalia elongata Himel1 dioecious)
ATGTCCGAGAAGTGGTTCATCCACGCGTCGCCGACGCTCTTCCACGCCGG
CACGTCCCACCCGCAGCTGTCAAGCTGTTTCCTCCTCCCCGTGAAGGAGG
ATAGCATCGTCGGTATCTACGACACGCTCAAGCAGATGTCCGAGAAGTGG
TTCATCCACGCGTCGCCGACGCTCTTCCACGCCGGCACGTCCCACCCGCA
GCTGTCAAGCTGTTTCCTCCTCCCCGTGAAGGAGGATAGCATCGTCGGTA
TCTACGACACGCTCAAGCAGTGCGCCAGCATCAGCAAGAGCGCCGGAGGT
ATCGGACTGAGCGTCCACTCCATCCGCGCCAGGGGGAGCTACATTCGAGG
AACCAAGGGCTTCTCCAACGGCCTCGTGCCAATGCTTCGAGTTTTTGACG
CCACCGCCTGCGCCAGCATCAGCAAGAGCGCCGGAGGTATCGGACTGAGC
GTCCACTCCATCCGCGCCAGGGGGAGCTACATTCGAGGAACCAAGGGCTT
CTCCAACGGCCTCGTGCCAATGCTTCGAGTTTTTGACGCCACCGCC
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