mRNA_H-elongata_contig15074.3379.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig15074.3379.1
Unique NamemRNA_H-elongata_contig15074.3379.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig15074.3379.1 vs. uniprot
Match: D8LLC6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLC6_ECTSI)

HSP 1 Score: 323 bits (828), Expect = 3.870e-97
Identity = 210/507 (41.42%), Postives = 260/507 (51.28%), Query Frame = 1
Query:    1 LARLMRSSRIFWDRGDVLLDAMAAYFGTRIGFYFAWLKFYTAALIYPTLMGLVVWWTEGQGGDLVSEIGVDKTGGSFSLCSIENKAGAPNAFPCASSCLLSVFLYWVWYIFNGVCSTVRCSGTRSRSGNLVYPLSRVFSGYTRALDG----------------DCKVEVFEDPWWRGGW---PVKAIKAAAAVEWSRRRSESAPISLAPYLNVFLALWATVFLVMWKRRSNTLAFRWGVHKEDIIARAKYMIGWKRRDRRGESLRRVADESRHSSFCADSVSRPKRF--------------------GDENSHAVDADNVALRRRSAAGNFRGKAVEAAVAAIEGASGKGQKVV---------------------------GSRARLNGVEASAWEPLRTARLFVSWALDAAMLYLAIRMMLWFAWLEVRSLRKFGGG-FNVHLVRIASVMVPTTFYGIHSKWAQAMTNWEGHVTEAGAENSMIVKRFSFRCVNSFSRLFYLCFWQR 1320
            L RL    R+FWDRGDVLLDA+A+YFGT++G+YFAWLKFYTAAL++PT++GL+VWWTE           + ++ G+      E      +   C S        +W W +   V +++  S  RS                                      D  V    D    G W   PV  ++               P S+APY N+FLA+WAT+FLV+W+RRS+TLAFRWGVHKED I RAK+M+GWKR  R G +        R +SF +                             G    HA     V LRR+ A G FR  A                                               S  R +G+E  AWEPLRTARLF+SW+L+A +LYLAIRMMLWFAWLEVRSL KFGGG F V LVR ASV++P+TFYG+H KWA A+T WE HVTEAGAENSM VKRF+FRCVNS++RLFYL FWQR
Sbjct:  180 LLRLQGPYRMFWDRGDVLLDAIASYFGTKVGYYFAWLKFYTAALVFPTVVGLLVWWTERVNS-------LAESSGTCVQVQREQACDGGSGVACGS--------WWRWPV--AVVTSLADSSARSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDELVXXXXD----GEWDPVPVGGVECEP------------PTSMAPYFNLFLAVWATLFLVLWQRRSSTLAFRWGVHKEDTIERAKFMVGWKRPGRAGMTPEGALQ--RQTSFSSSXXXXXXXXXXXXXXXXXXXXXXXXXXSSGSAKMHA----RVGLRRQCATGCFRATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGASEVREDGLEGGAWEPLRTARLFLSWSLEAVLLYLAIRMMLWFAWLEVRSLEKFGGGSFGVRLVRTASVILPSTFYGMHWKWAHALTTWEDHVTEAGAENSMTVKRFTFRCVNSYARLFYLGFWQR 647          
BLAST of mRNA_H-elongata_contig15074.3379.1 vs. uniprot
Match: A0A6H5JXQ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXQ8_9PHAE)

HSP 1 Score: 248 bits (634), Expect = 5.160e-70
Identity = 145/289 (50.17%), Postives = 171/289 (59.17%), Query Frame = 1
Query:  553 PISLAPYLNVFLALWATVFLVMWKRRSNTLAFRWGVHKEDIIARAKYMIGWKRRDRRGESLRRVADESRHSSFCADSVSRPKRFGDEN--------------------SHAVDADNVALRRRSAAGNFRGKAVEAAVAAIEGASGKGQKVV------------GSRARLNGVEASAWEPLRTARLFVSWALDAAMLYLAIRMMLWFAWLEVRSLRKFG-GGFNVHLVRIASVMVPTTFYGIHSKWAQAMTNWEGHVTEAGAENSMIVKRFSFRCVNSFSRLFYLCFWQR 1320
            P S+APY N+FLA+WAT+FLV+W+RRS+TLAFRWGVHKED I RAK+M+GWKR  R G +        R +SF +                                   A       LRR+ A G FR  A                                S  R +G+E  AWEPLRTARLFVSW+L+A +LYLAIRMMLWFAWLEVRSL KFG G     LVR ASV++P+TFY +H KWA A+T+WE HVTEA AENSM VKRF+FRCVNS+SRLFYL FWQR
Sbjct:  113 PTSMAPYFNLFLAVWATLFLVLWQRRSSTLAFRWGVHKEDTIERAKFMVGWKRPGRAGMTPEGALQ--RQTSFSSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSARMLARAGLRRQCATGCFRATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASGVREDGLEGGAWEPLRTARLFVSWSLEAVLLYLAIRMMLWFAWLEVRSLEKFGEGSLGFRLVRTASVILPSTFYDMHWKWAHALTSWEDHVTEASAENSMTVKRFTFRCVNSYSRLFYLGFWQR 399          
BLAST of mRNA_H-elongata_contig15074.3379.1 vs. uniprot
Match: A0A5D6YCN6_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YCN6_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 4.740e-7
Identity = 72/264 (27.27%), Postives = 107/264 (40.53%), Query Frame = 1
Query:  562 LAPYLNVFLALWATVFLVMWKRRSNTLAFRWGV--HKEDIIARAKYMIGWKRRDRRGESLRRVADESRHSSFCADSVSRPKRFGDENSHAVDADNVALRRRSAAGNFRGKAVEAAVAAIEGASGKGQKVVGSRARLNGVEASAWEPLRTARLFVSWALDAAMLY------------LAIRMMLWFAWLEVRSLRKFGGGFNVHLVRIASVMVPTTFYGIHSKWAQAMTNWEGHVTEAGAENSMIVKRFSFRCVNSFSRLFYLCF 1311
            LAP   VF+ALW + FL+ WKRR++TLA+RWG   ++ED                                     V+RP  +GD      +       RR A        V A++A I   +         R RL   E  + E    A+  V+ A+ A + +            L +    WF +L    L                +++P   +   +KWA+AMTNWE H TE+   + +I+K FSFR V+ F+ L+Y  F
Sbjct:  261 LAPLYAVFMALWTSAFLIAWKRRASTLAYRWGTLGYEEDT-----------------------------------EVTRPDFYGDPALSTPERKQYPAWRRYAKYAVTTPTVLASMALITMIT---YIAFAIRDRL---ECESLETKTHAK-HVASAIGADLEHGLTLKNLKQLSSLGLDWTFWFYFLVAPLLY--------------GLLIPVLDFAF-TKWARAMTNWENHETESRYRSHLILKVFSFRFVHVFASLYYYAF 467          
BLAST of mRNA_H-elongata_contig15074.3379.1 vs. uniprot
Match: A0A1V9ZXU1_9STRA (Anoctamin n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZXU1_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 1.910e-6
Identity = 26/58 (44.83%), Postives = 43/58 (74.14%), Query Frame = 1
Query:  526 WSRRRSESAPISLAPYLNVFLALWATVFLVMWKRRSNTLAFRWGV--HKEDIIARAKY 693
            W + +S+S    +AP+  +F+ALWA+ FLV WKRR+NTLA+RWGV  ++++ + R ++
Sbjct:  298 WQQVQSQSLDQPMAPFYALFMALWASAFLVAWKRRANTLAYRWGVLGYEDEEVLRPEF 355          
BLAST of mRNA_H-elongata_contig15074.3379.1 vs. uniprot
Match: A0A397A8H4_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397A8H4_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 6.680e-6
Identity = 69/275 (25.09%), Postives = 115/275 (41.82%), Query Frame = 1
Query:  487 WPVKAIKAAAAVEWSRRRSESAPISLAPYLNVFLALWATVFLVMWKRRSNTLAFRWGVHKEDIIARAKYMIGWKRRDRRGESLRRVADESRHSSFCADSVSRPKRFGDENSHAVDADNVALRRRSAAGNFRGKAVEAAVAAIEGASGKGQKVVGSRARLNGVEASAWEPLRTARLFVSWALDAAMLYLAIRMMLWFAWLEVRSLRKFGGGFNVHLVRIASVMVPTTFYGIHSKWAQAMTNWEGHVTEAGAENSMIVKRFSFRCVNSFSRLFYLCF 1311
            W V  +     +   + +S S    LAP   +F+A+WA++FLV W+RR+N+LA+RWGV            +G++  D   E LR     S  S     +  R  ++    S  V    + L    AA   R +  + +V+                     ++ +    L+   L +S     + ++  +    WF  L +  L     G  + +  IA   V TT           MT WE H TE+  ++++I+K F FRC++ F+ L+Y  F
Sbjct:   85 WLVAPVVVGIFLFVQQVQSASLDQPLAPVYALFMAIWASLFLVAWRRRANSLAYRWGV------------LGYEEDD---EVLRLAFRTSATSGL---TWKRWLKYTVTWSIVVGCIALVLTIMFAAFTARDRLQDESVS---------------------IQNNVTATLQDHELTLS---TLSSIHDVLTPRFWFYCLVMPMLY----GLCIPVFDIAFTWVATT-----------MTTWENHATESAHQSALILKVFPFRCIHVFATLYYYAF 302          
BLAST of mRNA_H-elongata_contig15074.3379.1 vs. uniprot
Match: W4H3T2_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4H3T2_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 7.560e-6
Identity = 69/275 (25.09%), Postives = 115/275 (41.82%), Query Frame = 1
Query:  487 WPVKAIKAAAAVEWSRRRSESAPISLAPYLNVFLALWATVFLVMWKRRSNTLAFRWGVHKEDIIARAKYMIGWKRRDRRGESLRRVADESRHSSFCADSVSRPKRFGDENSHAVDADNVALRRRSAAGNFRGKAVEAAVAAIEGASGKGQKVVGSRARLNGVEASAWEPLRTARLFVSWALDAAMLYLAIRMMLWFAWLEVRSLRKFGGGFNVHLVRIASVMVPTTFYGIHSKWAQAMTNWEGHVTEAGAENSMIVKRFSFRCVNSFSRLFYLCF 1311
            W V  +     +   + +S S    LAP   +F+A+WA++FLV W+RR+N+LA+RWGV            +G++  D   E LR     S  S     +  R  ++    S  V    + L    AA   R +  + +V+                     ++ +    L+   L +S     + ++  +    WF  L +  L     G  + +  IA   V TT           MT WE H TE+  ++++I+K F FRC++ F+ L+Y  F
Sbjct:  346 WLVAPVVVGIFLFVQQVQSASLDQPLAPVYALFMAIWASLFLVAWRRRANSLAYRWGV------------LGYEEDD---EVLRPAFRTSATSGL---TWKRWLKYTVTWSIVVGCIALVLTIMFAAFTARDRLEDESVS---------------------IQNNVTATLQDHELTLS---TLSSIHDVLTPRFWFYCLVMPMLY----GLCIPVFDIAFTWVATT-----------MTTWENHATESAHQSALILKVFPFRCIHVFATLYYYAF 563          
BLAST of mRNA_H-elongata_contig15074.3379.1 vs. uniprot
Match: A0A397AY73_9STRA (Uncharacterized protein n=9 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397AY73_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 7.610e-6
Identity = 69/275 (25.09%), Postives = 115/275 (41.82%), Query Frame = 1
Query:  487 WPVKAIKAAAAVEWSRRRSESAPISLAPYLNVFLALWATVFLVMWKRRSNTLAFRWGVHKEDIIARAKYMIGWKRRDRRGESLRRVADESRHSSFCADSVSRPKRFGDENSHAVDADNVALRRRSAAGNFRGKAVEAAVAAIEGASGKGQKVVGSRARLNGVEASAWEPLRTARLFVSWALDAAMLYLAIRMMLWFAWLEVRSLRKFGGGFNVHLVRIASVMVPTTFYGIHSKWAQAMTNWEGHVTEAGAENSMIVKRFSFRCVNSFSRLFYLCF 1311
            W V  +     +   + +S S    LAP   +F+A+WA++FLV W+RR+N+LA+RWGV            +G++  D   E LR     S  S     +  R  ++    S  V    + L    AA   R +  + +V+                     ++ +    L+   L +S     + ++  +    WF  L +  L     G  + +  IA   V TT           MT WE H TE+  ++++I+K F FRC++ F+ L+Y  F
Sbjct:  252 WLVAPVVVGIFLFVQQVQSASLDQPLAPVYALFMAIWASLFLVAWRRRANSLAYRWGV------------LGYEEDD---EVLRPAFRTSATSGL---TWKRWLKYTVTWSIVVGCIALVLTIMFAAFTARDRLEDESVS---------------------IQNNVTATLQDHELTLS---TLSSIHDVLTPRFWFYCLVMPMLY----GLCIPVFDIAFTWVATT-----------MTTWENHATESAHQSALILKVFPFRCIHVFATLYYYAF 469          
BLAST of mRNA_H-elongata_contig15074.3379.1 vs. uniprot
Match: A0A1V9YGE4_9STRA (Anoctamin n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YGE4_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 1.380e-5
Identity = 71/278 (25.54%), Postives = 116/278 (41.73%), Query Frame = 1
Query:  487 WPVKAIKAAAAVEWSRRRSESAPISLAPYLNVFLALWATVFLVMWKRRSNTLAFRWGV--HKEDIIARAKYMIGWKRRDRRGESLRRVADESRHSSFCADSVSRPKRFGDENSHAVDADNVALRRRSAAGNFRGKAVEAAVAAIEGASGKGQKVVGSRARLNGVEASAWEPLRTARLFVSWALDAAM-LYLAIRMMLWFAWLEVRSLRKFGGGFNVHLVRIASVMVPTTFYGIHSKWAQAMTNWEGHVTEAGAENSMIVKRFSFRCVNSFSRLFYLCF 1311
            W +      A + + + R++S    LAP+  +F+A+WA+ FLV W+R +N LA RWGV  ++++ I R ++  G +  DR   S +R                   ++G  +   + A    L     A + R    E ++A               RA L  +    W  L  A    S  LDA    YL +  ML+              G  + +  +A  ++           A  MT WE H TE+  ++++I+K F FR V+ F+ L+Y  F
Sbjct:  340 WLLLPTAVGAGLFYEQVRTQSLNQPLAPFYALFMAIWASAFLVAWRREANALAHRWGVLGYEDEEIFRPEF-YGNRPGDRHYSSWKRWL-----------------KYGATHLVVLMAIGAVLVVMYYAFSTRDALAEHSLAV--------------RANLTQLS---WASLAAA----SGDLDAGFWFYLLVTPMLY--------------GLCIPVADVAFTLL-----------AARMTAWENHKTESAFQSALILKVFPFRFVHVFATLYYYAF 553          
BLAST of mRNA_H-elongata_contig15074.3379.1 vs. uniprot
Match: A0A6G0XVF3_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XVF3_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 2.410e-5
Identity = 74/261 (28.35%), Postives = 108/261 (41.38%), Query Frame = 1
Query:  538 RSESAPISLAPYLNVFLALWATVFLVMWKRRSNTLAFRWGV---HKEDIIARAKYMIGWKRRDRRGESLRRVADESRHSSFCADSVSRPKRFGDENSHAVDADNVALRRRSAAGNFRGKAVEAAVAAIEGASGKGQKVVGSRARLNGVEASAWEPLRTARLFVSWALDAAMLYLAIRMMLWFAWLEVRSLRKFGGGFNVHLVRIASVMVPTTFYGIHSKWAQAMTNWEGHVTEAGAENSMIVKRFSFRCVNSFSRLFYLCF 1311
            +S+S    LAP   +F+A+WA+VFLV WKRR+N+LA+RWGV     +D   RA Y      RD   + L R    +R   +    V                                  V   +AAI G          +R RL   E+ A +   TA+    W  D  +  LA           +R     G  F + L+ +   +    F    S  A  +T WE H TE+  ++++I+K F FRCV+ F+ L+Y  F
Sbjct:  346 QSQSLDQPLAPVYALFMAVWASVFLVAWKRRANSLAYRWGVLGYEDDDEDIRADY------RDATSKFLPRGC--TRWLKYAVTFV---------------------------------VVVVFMAAILGVM---YFAFTTRDRLQ-QESLAVQSNLTAQ----WH-DLTLANLA----------SIRDGLSIGFWFYLLLMPMLYGLCIPVFDMAFSSIATKLTKWENHKTESAYQSALILKVFPFRCVHVFASLYYYAF 546          
BLAST of mRNA_H-elongata_contig15074.3379.1 vs. uniprot
Match: A0A485LLE1_9STRA (Aste57867_21126 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LLE1_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 7.400e-5
Identity = 71/301 (23.59%), Postives = 115/301 (38.21%), Query Frame = 1
Query:  487 WPVKAIKAAAAVEWSRRRSESAPISLAPYLNVFLALWATVFLVMWKRRSNTLAFRWGV-----HKEDIIARAKYMI-----GWKRRDRR---------------GESLRRVADE-SRHSSFCADSVSRPKRFGDENSHAVDADNVALRRRSAAGNFRGKAVEAAVAAIEGASGKGQKVVGSRARLNGVEASAWEPLRTARLFVSWALDAAMLYLAIRMMLWFAWLEVRSLRKFGGGFNVHLVRIASVMVPTTFYGIHSKWAQAMTNWEGHVTEAGAENSMIVKRFSFRCVNSFSRLFYLCF 1311
            W V        +   + RS+S    LAP+  +F+A+WA++FLV WKRR+++LA+RWGV        D   R  Y+      GW    RR               G +L  + +  +      ADS++    + + ++H  D   +A                                  +  RL G+ + A+           W       YL I  ML+              G  + L+ +A   + T            +T WE H T+A   +++I+K F FRCV++F+ L+Y  F
Sbjct:  340 WLVPPTLVGILLFLQQIRSQSLDQPLAPFYALFMAVWASLFLVAWKRRASSLAYRWGVLGYEDDDHDQAIRPGYVPDATLGGWSSSWRRWPKYIATLGVTVVCTGATLAVMYEAFTTRDRLQADSLASSSSWSNVSAHLTDDLTLA----------------------------------NLGRLEGLLSPAF-----------W------FYLLIMPMLY--------------GLCIPLLDLAFTALATR-----------LTEWEHHKTDAAHHSALILKVFPFRCVHTFATLYYYAF 564          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig15074.3379.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
D8LLC6_ECTSI3.870e-9741.42Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JXQ8_9PHAE5.160e-7050.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A5D6YCN6_9STRA4.740e-727.27Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A1V9ZXU1_9STRA1.910e-644.83Anoctamin n=1 Tax=Thraustotheca clavata TaxID=7455... [more]
A0A397A8H4_9STRA6.680e-625.09Uncharacterized protein (Fragment) n=1 Tax=Aphanom... [more]
W4H3T2_9STRA7.560e-625.09Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A397AY73_9STRA7.610e-625.09Uncharacterized protein n=9 Tax=Aphanomyces astaci... [more]
A0A1V9YGE4_9STRA1.380e-525.54Anoctamin n=1 Tax=Achlya hypogyna TaxID=1202772 Re... [more]
A0A6G0XVF3_9STRA2.410e-528.35Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A485LLE1_9STRA7.400e-523.59Aste57867_21126 protein n=1 Tax=Aphanomyces stella... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig15074contigH-elongata_contig15074:3008..7215 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score325.9
Seed ortholog evalue3e-86
Seed eggNOG ortholog2880.D8LLC6
EggNOG free text desc.intracellular chloride channel activity
EggNOG OGsKOG2513@1,KOG2513@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal anchor
Ec32 ortholog descriptionAnoctamin
Ec32 orthologEc-27_002130.1
Exons8
Model size1323
Cds size1311
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929891.9262588-CDS-H-elongata_contig15074:3007..31361622929891.9262588-CDS-H-elongata_contig15074:3007..3136Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15074 3008..3136 -
1691679197.518737-CDS-H-elongata_contig15074:3007..31361691679197.518737-CDS-H-elongata_contig15074:3007..3136Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15074 3008..3136 -
1622929891.9463816-CDS-H-elongata_contig15074:3679..37371622929891.9463816-CDS-H-elongata_contig15074:3679..3737Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15074 3680..3737 -
1691679197.5299249-CDS-H-elongata_contig15074:3679..37371691679197.5299249-CDS-H-elongata_contig15074:3679..3737Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15074 3680..3737 -
1622929891.980861-CDS-H-elongata_contig15074:4067..41331622929891.980861-CDS-H-elongata_contig15074:4067..4133Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15074 4068..4133 -
1691679197.5394738-CDS-H-elongata_contig15074:4067..41331691679197.5394738-CDS-H-elongata_contig15074:4067..4133Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15074 4068..4133 -
1622929891.9970837-CDS-H-elongata_contig15074:4852..52521622929891.9970837-CDS-H-elongata_contig15074:4852..5252Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15074 4853..5252 -
1691679197.548618-CDS-H-elongata_contig15074:4852..52521691679197.548618-CDS-H-elongata_contig15074:4852..5252Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15074 4853..5252 -
1622929892.008436-CDS-H-elongata_contig15074:5648..57151622929892.008436-CDS-H-elongata_contig15074:5648..5715Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15074 5649..5715 -
1691679197.5609848-CDS-H-elongata_contig15074:5648..57151691679197.5609848-CDS-H-elongata_contig15074:5648..5715Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15074 5649..5715 -
1622929892.0201159-CDS-H-elongata_contig15074:6172..63521622929892.0201159-CDS-H-elongata_contig15074:6172..6352Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15074 6173..6352 -
1691679197.5782282-CDS-H-elongata_contig15074:6172..63521691679197.5782282-CDS-H-elongata_contig15074:6172..6352Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15074 6173..6352 -
1622929892.033991-CDS-H-elongata_contig15074:6526..68701622929892.033991-CDS-H-elongata_contig15074:6526..6870Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15074 6527..6870 -
1691679197.5892324-CDS-H-elongata_contig15074:6526..68701691679197.5892324-CDS-H-elongata_contig15074:6526..6870Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15074 6527..6870 -
1622929892.0479355-CDS-H-elongata_contig15074:7136..72031622929892.0479355-CDS-H-elongata_contig15074:7136..7203Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15074 7137..7203 -
1691679197.6004615-CDS-H-elongata_contig15074:7136..72031691679197.6004615-CDS-H-elongata_contig15074:7136..7203Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15074 7137..7203 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929892.0580478-UTR-H-elongata_contig15074:7203..72151622929892.0580478-UTR-H-elongata_contig15074:7203..7215Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig15074 7204..7215 -
1691679197.6096337-UTR-H-elongata_contig15074:7203..72151691679197.6096337-UTR-H-elongata_contig15074:7203..7215Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig15074 7204..7215 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig15074.3379.1prot_H-elongata_contig15074.3379.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig15074 3008..7203 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig15074.3379.1

>prot_H-elongata_contig15074.3379.1 ID=prot_H-elongata_contig15074.3379.1|Name=mRNA_H-elongata_contig15074.3379.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=437bp
MRSSRIFWDRGDVLLDAMAAYFGTRIGFYFAWLKFYTAALIYPTLMGLVV
WWTEGQGGDLVSEIGVDKTGGSFSLCSIENKAGAPNAFPCASSCLLSVFL
YWVWYIFNGVCSTVRCSGTRSRSGNLVYPLSRVFSGYTRALDGDCKVEVF
EDPWWRGGWPVKAIKAAAAVEWSRRRSESAPISLAPYLNVFLALWATVFL
VMWKRRSNTLAFRWGVHKEDIIARAKYMIGWKRRDRRGESLRRVADESRH
SSFCADSVSRPKRFGDENSHAVDADNVALRRRSAAGNFRGKAVEAAVAAI
EGASGKGQKVVGSRARLNGVEASAWEPLRTARLFVSWALDAAMLYLAIRM
MLWFAWLEVRSLRKFGGGFNVHLVRIASVMVPTTFYGIHSKWAQAMTNWE
GHVTEAGAENSMIVKRFSFRCVNSFSRLFYLCFWQR*
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mRNA from alignment at H-elongata_contig15074:3008..7215-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig15074.3379.1 ID=mRNA_H-elongata_contig15074.3379.1|Name=mRNA_H-elongata_contig15074.3379.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=4208bp|location=Sequence derived from alignment at H-elongata_contig15074:3008..7215- (Himanthalia elongata Himel1 dioecious)
CTGGCGCGTCTCATGAGGTCTTCTCGAATTTTTTGGGATCGAGGGGATGT GCTGCTCGACGCCATGGCCGCCTACTTTGGTGAGTTCACAGCCTAAACAG CGACGGAATCGGAATCGTTCGCCTCGGTAAGGGATGTGGTTTCGGAGAGC AGACACCTGATCTAGATGACCTGGCAGCCCACACGTGGGGATATTTCTCC TGCATCTCCGACCCCTCCAAGCCGAGGTCCGACCGAGCCGAACCGACTGA GATCTCCTCCGCGGGCGGAAAAAACACGAGACCGCGGCGGCAGCGGAGCG TCTCATGTCGAGAAATTTCTTCTGCCTTCCCCTCTCCCCCTGTAGGTACC AGGATCGGCTTCTACTTTGCGTGGCTCAAGTTTTACACGGCGGCCTTAAT ATACCCGACCCTTATGGGCCTCGTGGTCTGGTGGACGGAAGGACAGGGGG GGGATCTGGTCTCCGAAATCGGTGTCGATAAGACAGGTGGGTCCTTTTCT CTTTGCAGCATTGAAAATAAAGCAGGAGCGCCGAATGCGTTCCCTTGCGC ATCTTCGTGTCTTTTGTCTGTGTTTCTATACTGGGTTTGGTATATATTTA ATGGCGTTTGCAGTACGGTACGATGCAGTGGTACACGATCGAGGTCCGGT AATCTTGTGTACCCTCTGTCACGAGTATTTTCGGGGTATGTTCCCTGTAT GTTATTGTTGGGTAGAACTACTCCATTCCAGCGAGCTTGCTGAAGGGAAC CCCCCCCCCTCCCCCCAATTTCGTGACTCCCACGTCACCGCAGCCACGAT TGCCCTCTCTTCTGTCCCCTCTTGGCCTCCTTCCCTCTCCTACTTCCAGG AATAGAGGAAAAGACCCGCGCGCTCGACGGTGACTGCAAGGTAGAGGTTT TCGAAGATCCTTGGTGGAGGGGGGGGTGGCCCGTAAAAGCAATCAAGGCG GCCGCGGCTGTGGAATGGAGCAGACGGCGAAGCGAATCCGCGCCCATCTC CCTGGCGCCCTACTTGAACGTATTTCTGGCTTTGTGGGCGACGGTGCGAG CCGGAAGCCGTTTGACCGCGATCGCTGTCCCTTCCCCCAAGAGCTTTCCA CGGTATTAAGGGAAACCTACCTCTCCCTATGACCACCATGCCCATGCCGC TGGAGAGCGCGCCTCATATATATCCATATTATAATATCTATTAAATGCTA TGCTCTCTCTCTCTCTCTAGATATATACCCTGACCGACCCCTAGGAAACC TTTTCGTTCTCGTCTGATTCAACAGACACTTCGTGGAGACTTACCGCTGG GATATTGTACATAATAGTATATAGGATATAGGATATAAACCCCTCTCGTG AAGTATATTCGGACTAAGTACAAAGTGTTCCTCTGTGTGTGTTTTGTGTA TGTGTTGTGTGTATTTTCACCTGTGCTCGTTTCTTCCCCTCTTGTCGCTT TCTTTTGGGTGCTTTGGTGGGACCCTGTGGACGCTTCGTCGTGGACACAG GTTTTCCTAGTGATGTGGAAGCGGCGGAGTAACACGCTGGCGTTTCGGTG GGGTGTGCACAAGGAAGGTCAGCTTTGCCGTCCCCATTCCCGTCCCCGTC CCACCCACTCTTGTGGTTCTATATTTTACAGATACATAAAAAACACTCAG AAAATTGCCTTCAAAATCGCGAACACAAACATACACACGCGCGCGCGCAT AAAACGAGCCCGCTCGACTACTGCGAAAGCGCGATGAGCACAGTCCCGTC TGAAATGTTTTTTTCTTTATTTTTTTCTTTTCGGTTGTGCGTATGTCTGT CTCAATGGATGAATACTATTACCGTCAAGTCGCAGCAGCAGCACACACTT TCGTCGAGATGAAACCCGATATGAGTGTGGACAAGACACTCAATGCTCCA GTCCATTCCGCGCGCGCGCGTAACCCCCTCTTTTCTCTCTCCCTCTCTTT CTCTAATATCAAGACATTATCGCACGGGCGAAGTACATGATAGGGTGGAA GCGACGGGACAGGAGGGGAGAAAGCCTCAGGCGAGTCGCGGACGAGTCCC GGCACTCCTCGTTCTGCGCCGACTCCGTCTCTCGACCAAAACGCTTCGGC GACGAGAACTCCCATGCGGTGGATGCGGACAATGTTGCGCTCCGACGACG CAGCGCGGCGGGGAATTTCCGCGGTAAGGCGGTAGAGGCGGCGGTCGCAG CGATCGAGGGTGCTTCGGGCAAGGGTCAGAAGGTGGTCGGGAGCAGAGCG AGGCTGAACGGAGTGGAGGCAAGCGCCTGGGAGCCCCTGCGGACGGCGCG GCTTTTCGTATCGTGGGCGCTCGACGCGGCGATGCTGTATCTAGCCATTC GGATGATGCTCTGGTGAGGGAGCGATTTCGGGAATGGTCCAGGGAACGGT CCCGGGGTGCCTCCGAGAGCCGAAAGAGCCGTCGTTTTGAATGGTACTAC GCGTGATGCTGGCTTGGCCTATCAATAGAGCAAGAACGTGTGCGATAAGA GTAACGCGATTCGTTCGTGGGCGCGAGATATAAGGCGCGTGGCGTAGAAC AAGCCAACAAGATGAGTGTGGGAGGTTTGGCTGTTGCTGGGATTTCGAAT TCCATCGCCCTAATCGCGCGAGCGAGGAGGATTCCTGTCACCACGGCGGT GTTAGCCCTAAACCTTCATCCGCGTAGATAACTTTAGGTTCTAAATTTTC AACCCAACAGTCACGTCCTAGAGGAGATTTGGCCGGGAAAAATATAAGGC GCAGCAGCTGCAGCTGCTGTGATTGTCTTGTGAACACCAACAGCAATATT GGTATCAACAGCAAAATTTCACATCAGCGTCGACAAAAACGCGAACCAGC AGTGGAGTACACAGGCAGTGCCTAGCAATCTGTGAAGCAATCGATCTCCT TGTGCCGGCATAGTTTTGATGAAACATATGCGCTAGATATGACTTGGCTT GACACGGTAAGCATGCGCGTGCTATCGAGGCTTAGGCTCCGCCGCGGTAG AAATCTTACTGACTTTGGCGGTACATTGGCTGATTGCGGCTCTTCGCGAC CCCAAACCCTAACAAACGCTGTCCGAAAAAAGGTTCGCGTGGCTGGAGGT TCGGTCCTTGCGGAAATTTGGTGGGGGCTTCAACGTTCATCTCGTTAGGT GCGAGCGACGATGTGTTTCGCCCCTCCCCCCCCCGTGCAGCGTGTGCATC CATAAATGTATGAAAACCCGACCCGTTCGGTCATCGGTATTCGTCACTAC TTCGGTAATCTTGTTCAGTAATTGTTTTTACTCAATATTATACGGAGGTA TTATATTAGGCTCCAAACTGTGGAGTCTTTTGTTCTAGTTTTGTTCCGTT CAATTTTTTATTTATATTAATATTTATTAAAAAGAACTTTGAACTCATTC TATAATTATTAATTTATTAATTTATTAATTTTCCATCTCACTTGTAGAAA TGTTTTCGTCTCTTTGGGATGTGCGCAGGATCGCATCGGTGATGGTCCCC ACGACCTTCTACGGAATTCATAGCAAATGGGCACAGGTGGACACACAAGA GTCGACCTAGGGCGTCACACGTCATACATCACGTGTCGCACATCACATGT CCCGCGTCAGCAAGTTCAACAACGGTAGCAATAATATCCTGCGATATTGA ATGCCTCGCTGCAGCTCATTTAGTCTCAAGAGGGTGATCCGAGTCTTTAT CGTCTCAACCATTAGGCTCCCTCCGCACCGCTACGTGCTGTATTTACGAC GCCGTACATTATCCGTACACACACTATCGTACATATATGATCGTACATAC ATACACTAGTCTTCGCATGCGATGCTCTAATCCAAGGAATAGCCTTGCTG CGCACCTCGTGTGTCAAGGGGTAGCAGCCTTCCCCCGCCGCCTGCCGCCC CGAGCTTCACACACTTTGTTTGGCCATGTGTATGCTTGCTTGCGTGTGTG TCTGTGTTGAGCAGCAGTAGAACACACCATCGTGGCTGCCCTCGGTGACC TCAGTTTTTAATCGAATTGGCGGTTTTCCATTGGGGCGCGCGGCGGGGGG GGGGTTGGCGGGGTCGGTTGGTGATGCAGGCGATGACGAACTGGGAAGGC CACGTGACCGAGGCGGGGGCCGAAAACAGCATGATCGTGAAGCGCTTCTC TTTCAGATGTGTCAACAGCTTCTCGCGCCTCTTCTACCTTTGCTTCTGGC AGAGGTAA
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Coding sequence (CDS) from alignment at H-elongata_contig15074:3008..7215-

>mRNA_H-elongata_contig15074.3379.1 ID=mRNA_H-elongata_contig15074.3379.1|Name=mRNA_H-elongata_contig15074.3379.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2622bp|location=Sequence derived from alignment at H-elongata_contig15074:3008..7215- (Himanthalia elongata Himel1 dioecious)
ATGAGGTCTTCTCGAATTTTTTGGGATCGAGGGGATGTGCTGCTCGACGC
CATGGCCGCCTACTTTGATGAGGTCTTCTCGAATTTTTTGGGATCGAGGG
GATGTGCTGCTCGACGCCATGGCCGCCTACTTTGGTACCAGGATCGGCTT
CTACTTTGCGTGGCTCAAGTTTTACACGGCGGCCTTAATATACCCGACCC
TTATGGGCCTCGTGGTCTGGTGGACGGAAGGACAGGGGGGGGATCTGGTC
TCCGAAATCGGTGTCGATAAGACAGGTGGGTCCTTTTCTCTTTGCAGCAT
TGAAAATAAAGCAGGAGCGCCGAATGCGTTCCCTTGCGCATCTTCGTGTC
TTTTGTCTGTGTTTCTATACTGGGTTTGGTATATATTTAATGGCGTTTGC
AGTACGGTACGATGCAGTGGTACACGATCGAGGTCCGGTAATCTTGTGTA
CCCTCTGTCACGAGTATTTTCGGGGTATGTACCAGGATCGGCTTCTACTT
TGCGTGGCTCAAGTTTTACACGGCGGCCTTAATATACCCGACCCTTATGG
GCCTCGTGGTCTGGTGGACGGAAGGACAGGGGGGGGATCTGGTCTCCGAA
ATCGGTGTCGATAAGACAGGTGGGTCCTTTTCTCTTTGCAGCATTGAAAA
TAAAGCAGGAGCGCCGAATGCGTTCCCTTGCGCATCTTCGTGTCTTTTGT
CTGTGTTTCTATACTGGGTTTGGTATATATTTAATGGCGTTTGCAGTACG
GTACGATGCAGTGGTACACGATCGAGGTCCGGTAATCTTGTGTACCCTCT
GTCACGAGTATTTTCGGGGTATACCCGCGCGCTCGACGGTGACTGCAAGG
TAGAGGTTTTCGAAGATCCTTGGTGGAGGGGGGGGTGGCCCGTAAAAGCA
ATCAAGGCGGCCGCGGCTGTGGAATGGAGCAGACGGCGAAGCGAATCCGC
GCCCATCTCCCTGGCGCCCTACTTGAACGTATTTCTGGCTTTGTGGGCGA
CGACCCGCGCGCTCGACGGTGACTGCAAGGTAGAGGTTTTCGAAGATCCT
TGGTGGAGGGGGGGGTGGCCCGTAAAAGCAATCAAGGCGGCCGCGGCTGT
GGAATGGAGCAGACGGCGAAGCGAATCCGCGCCCATCTCCCTGGCGCCCT
ACTTGAACGTATTTCTGGCTTTGTGGGCGACGGTTTTCCTAGTGATGTGG
AAGCGGCGGAGTAACACGCTGGCGTTTCGGTGGGGTGTGCACAAGGAAGG
TTTTCCTAGTGATGTGGAAGCGGCGGAGTAACACGCTGGCGTTTCGGTGG
GGTGTGCACAAGGAAGACATTATCGCACGGGCGAAGTACATGATAGGGTG
GAAGCGACGGGACAGGAGGGGAGAAAGCCTCAGGCGAGTCGCGGACGAGT
CCCGGCACTCCTCGTTCTGCGCCGACTCCGTCTCTCGACCAAAACGCTTC
GGCGACGAGAACTCCCATGCGGTGGATGCGGACAATGTTGCGCTCCGACG
ACGCAGCGCGGCGGGGAATTTCCGCGGTAAGGCGGTAGAGGCGGCGGTCG
CAGCGATCGAGGGTGCTTCGGGCAAGGGTCAGAAGGTGGTCGGGAGCAGA
GCGAGGCTGAACGGAGTGGAGGCAAGCGCCTGGGAGCCCCTGCGGACGGC
GCGGCTTTTCGTATCGTGGGCGCTCGACGCGGCGATGCTGTATCTAGCCA
TTCGGATGATGCTCTGACATTATCGCACGGGCGAAGTACATGATAGGGTG
GAAGCGACGGGACAGGAGGGGAGAAAGCCTCAGGCGAGTCGCGGACGAGT
CCCGGCACTCCTCGTTCTGCGCCGACTCCGTCTCTCGACCAAAACGCTTC
GGCGACGAGAACTCCCATGCGGTGGATGCGGACAATGTTGCGCTCCGACG
ACGCAGCGCGGCGGGGAATTTCCGCGGTAAGGCGGTAGAGGCGGCGGTCG
CAGCGATCGAGGGTGCTTCGGGCAAGGGTCAGAAGGTGGTCGGGAGCAGA
GCGAGGCTGAACGGAGTGGAGGCAAGCGCCTGGGAGCCCCTGCGGACGGC
GCGGCTTTTCGTATCGTGGGCGCTCGACGCGGCGATGCTGTATCTAGCCA
TTCGGATGATGCTCTGGTTCGCGTGGCTGGAGGTTCGGTCCTTGCGGAAA
TTTGGTGGGGGCTTCAACGTTCATCTCGTTAGGTTCGCGTGGCTGGAGGT
TCGGTCCTTGCGGAAATTTGGTGGGGGCTTCAACGTTCATCTCGTTAGGA
TCGCATCGGTGATGGTCCCCACGACCTTCTACGGAATTCATAGCAAATGG
GCACAGGATCGCATCGGTGATGGTCCCCACGACCTTCTACGGAATTCATA
GCAAATGGGCACAGGCGATGACGAACTGGGAAGGCCACGTGACCGAGGCG
GGGGCCGAAAACAGCATGATCGTGAAGCGCTTCTCTTTCAGATGTGTCAA
CAGCTTCTCGCGCCTCTTCTACCTTTGCTTCTGGCAGAGGTAAGCGATGA
CGAACTGGGAAGGCCACGTGACCGAGGCGGGGGCCGAAAACAGCATGATC
GTGAAGCGCTTCTCTTTCAGATGTGTCAACAGCTTCTCGCGCCTCTTCTA
CCTTTGCTTCTGGCAGAGGTAA
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