mRNA_H-elongata_contig150607.3374.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig150607.3374.1
Unique NamemRNA_H-elongata_contig150607.3374.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig150607.3374.1 vs. uniprot
Match: D8LHX2_ECTSI (Serine/threonine protein phosphatase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHX2_ECTSI)

HSP 1 Score: 224 bits (571), Expect = 1.570e-66
Identity = 104/133 (78.20%), Postives = 118/133 (88.72%), Query Frame = 1 
Query:    1 DEFLVMACDGVWDVMGNDEACIFLRRLIQEGCRDLGDMLERLQDACLAKSSMDNMSVLMISFRAAWDEGPHLHKSARFILQWGCEEVLRWLSVNNFGQYQEDFEKHVIDGATLLSLTEEDLHYKLRLKKVTLR 399
            DEF+VMACDGVWDVMGNDEAC FLR+ IQEG RDLG +LE ++D CLAK SMDNMSVL+I+F+AAW+EG HLHKSAR+ILQWGCEEV RWL+ NNFGQYQ+DF+KH IDG  LLSLTE DLH+KLRLKKV LR
Sbjct:  418 DEFVVMACDGVWDVMGNDEACFFLRKSIQEGNRDLGRILEDMEDVCLAKQSMDNMSVLVIAFKAAWEEGLHLHKSARYILQWGCEEVSRWLATNNFGQYQDDFDKHYIDGVQLLSLTEADLHHKLRLKKVGLR 550
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BLAST of mRNA_H-elongata_contig150607.3374.1 vs. uniprot
Match: A0A7S2V4V3_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V4V3_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 3.360e-14
Identity = 36/70 (51.43%), Postives = 46/70 (65.71%), Query Frame = 1 
Query:    1 DEFLVMACDGVWDVMGNDEACIFLRRLIQEGCRDLGDMLERLQDACLAKSSMDNMSVLMISFRAAWDEGP 210
            DE LV+ACDG+WDVM N + C  +R++ QEG  D G + E L D CL K S DNMSV+M+ F A  +  P
Sbjct:  230 DEVLVLACDGIWDVMSNQDCCDCVRQIYQEGETDSGLVCEELLDTCLTKGSRDNMSVVMVQFPAMLEPPP 299
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BLAST of mRNA_H-elongata_contig150607.3374.1 vs. uniprot
Match: UPI001C35FA9D ((large yellow croaker) hypothetical protein n=1 Tax=Larimichthys crocea TaxID=215358 RepID=UPI001C35FA9D)

HSP 1 Score: 75.5 bits (184), Expect = 3.400e-14
Identity = 34/65 (52.31%), Postives = 47/65 (72.31%), Query Frame = 1 
Query:    1 DEFLVMACDGVWDVMGNDEACIFLRRLIQEGCRDLGDMLERLQDACLAKSSMDNMSVLMISFRAA 195
            DEFL++ACDGVWD +GN+E C F+R  +Q  C DL D+  ++ D CL K S+DNMS+++I F  A
Sbjct:   48 DEFLILACDGVWDAIGNEELCAFVRSRLQV-CDDLRDICTQVIDLCLYKGSLDNMSIIIICFPGA 111
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BLAST of mRNA_H-elongata_contig150607.3374.1 vs. uniprot
Match: UPI001F077132 (protein phosphatase, Mg2+/Mn2+ dependent, 1Na (putative) n=1 Tax=Hypomesus transpacificus TaxID=137520 RepID=UPI001F077132)

HSP 1 Score: 77.8 bits (190), Expect = 3.860e-14
Identity = 36/76 (47.37%), Postives = 53/76 (69.74%), Query Frame = 1 
Query:    1 DEFLVMACDGVWDVMGNDEACIFLRRLIQEGCRDLGDMLERLQDACLAKSSMDNMSVLMISFRAAWDEGPHLHKSA 228
            DEFL++ACDGVWDV+GN+E C F+R  +Q  C DL ++  ++ D CL K S+DNMS++++ F  A    PH+ + A
Sbjct:  279 DEFLILACDGVWDVIGNEELCAFVRSRMQV-CNDLREICSQVIDLCLYKGSLDNMSIIIVCFPGA----PHVSQEA 349
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BLAST of mRNA_H-elongata_contig150607.3374.1 vs. uniprot
Match: A0A484DUJ2_BRELC (PPM-type phosphatase domain-containing protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DUJ2_BRELC)

HSP 1 Score: 77.0 bits (188), Expect = 5.050e-14
Identity = 35/65 (53.85%), Postives = 46/65 (70.77%), Query Frame = 1 
Query:    1 DEFLVMACDGVWDVMGNDEACIFLRRLIQEGCRDLGDMLERLQDACLAKSSMDNMSVLMISFRAA 195
            +EFLV+ACDG+WDVM NDE C F+R+L+  G  DL  + E + D CL+  S DNMSV++I F  A
Sbjct:  234 EEFLVLACDGIWDVMTNDEICAFIRQLLSNGETDLRLIAEEVLDKCLSSGSRDNMSVVIIKFPGA 298
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BLAST of mRNA_H-elongata_contig150607.3374.1 vs. uniprot
Match: A0A4U5V0W0_COLLU (Protein phosphatase 1A n=1 Tax=Collichthys lucidus TaxID=240159 RepID=A0A4U5V0W0_COLLU)

HSP 1 Score: 77.0 bits (188), Expect = 5.830e-14
Identity = 35/65 (53.85%), Postives = 48/65 (73.85%), Query Frame = 1 
Query:    1 DEFLVMACDGVWDVMGNDEACIFLRRLIQEGCRDLGDMLERLQDACLAKSSMDNMSVLMISFRAA 195
            DEFL++ACDGVWD +GN+E C F+R  +Q  C DL D+  ++ D CL K S+DNMS+++I F AA
Sbjct:  271 DEFLILACDGVWDAIGNEELCAFVRSRLQV-CDDLRDICTQVIDLCLYKGSLDNMSIIIICFPAA 334
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BLAST of mRNA_H-elongata_contig150607.3374.1 vs. uniprot
Match: A0A1V9ZVL1_9STRA (Phosphatase 2C n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZVL1_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 6.190e-14
Identity = 34/65 (52.31%), Postives = 47/65 (72.31%), Query Frame = 1 
Query:    1 DEFLVMACDGVWDVMGNDEACIFLRRLIQEGCRDLGDMLERLQDACLAKSSMDNMSVLMISFRAA 195
            DEFL++ACDG+WDVM ND+AC F+R L+ +G  ++G + E L D CL   S DNMSV+++ F  A
Sbjct:  226 DEFLILACDGIWDVMTNDDACDFVRSLMNKGESNMGLICEELLDHCLQLGSRDNMSVVIVKFAGA 290
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BLAST of mRNA_H-elongata_contig150607.3374.1 vs. uniprot
Match: A0A024UAN9_9STRA (PPM-type phosphatase domain-containing protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UAN9_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 7.190e-14
Identity = 34/64 (53.12%), Postives = 49/64 (76.56%), Query Frame = 1 
Query:    4 EFLVMACDGVWDVMGNDEACIFLRRLIQEGCRDLGDMLERLQDACLAKSSMDNMSVLMISFRAA 195
            EFL++ACDGVWDV+ N+EAC F+R +++ G RD+G + E L D CL+  S DNMSV++++F  A
Sbjct:  229 EFLLLACDGVWDVLSNEEACDFVRSVMKLGERDMGLICEELLDHCLSLDSRDNMSVVLVAFDGA 292
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BLAST of mRNA_H-elongata_contig150607.3374.1 vs. uniprot
Match: A0A8C6LNX9_NOTFU (Protein phosphatase 1A-like n=2 Tax=Nothobranchius furzeri TaxID=105023 RepID=A0A8C6LNX9_NOTFU)

HSP 1 Score: 76.6 bits (187), Expect = 7.500e-14
Identity = 33/65 (50.77%), Postives = 48/65 (73.85%), Query Frame = 1 
Query:    1 DEFLVMACDGVWDVMGNDEACIFLRRLIQEGCRDLGDMLERLQDACLAKSSMDNMSVLMISFRAA 195
            DEFL++ACDGVWD +GN+E C F+R  +Q  C DL D+  ++ D CL K S+DN+S++++ FR A
Sbjct:  225 DEFLILACDGVWDAIGNEELCAFVRNRLQV-CDDLRDICAQVIDLCLYKGSLDNISIIIVCFRGA 288
[Close]
BLAST of mRNA_H-elongata_contig150607.3374.1 vs. uniprot
Match: A0A6J2VQ50_CHACN (protein phosphatase 1A-like n=1 Tax=Chanos chanos TaxID=29144 RepID=A0A6J2VQ50_CHACN)

HSP 1 Score: 76.6 bits (187), Expect = 9.890e-14
Identity = 34/65 (52.31%), Postives = 47/65 (72.31%), Query Frame = 1 
Query:    1 DEFLVMACDGVWDVMGNDEACIFLRRLIQEGCRDLGDMLERLQDACLAKSSMDNMSVLMISFRAA 195
            DEFLV+ACDGVWD +GN+E C F+R  +Q  C DL D+  ++ D CL K S+DNMS++++ F  A
Sbjct:  279 DEFLVVACDGVWDAVGNEELCAFIRNRLQV-CDDLRDICSQVIDLCLYKGSLDNMSIIIVCFSGA 342
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig150607.3374.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LHX2_ECTSI1.570e-6678.20Serine/threonine protein phosphatase n=1 Tax=Ectoc... [more]
A0A7S2V4V3_9STRA3.360e-1451.43Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
UPI001C35FA9D3.400e-1452.31(large yellow croaker) hypothetical protein n=1 Ta... [more]
UPI001F0771323.860e-1447.37protein phosphatase, Mg2+/Mn2+ dependent, 1Na (put... [more]
A0A484DUJ2_BRELC5.050e-1453.85PPM-type phosphatase domain-containing protein n=1... [more]
A0A4U5V0W0_COLLU5.830e-1453.85Protein phosphatase 1A n=1 Tax=Collichthys lucidus... [more]
A0A1V9ZVL1_9STRA6.190e-1452.31Phosphatase 2C n=1 Tax=Thraustotheca clavata TaxID... [more]
A0A024UAN9_9STRA7.190e-1453.13PPM-type phosphatase domain-containing protein n=2... [more]
A0A8C6LNX9_NOTFU7.500e-1450.77Protein phosphatase 1A-like n=2 Tax=Nothobranchius... [more]
A0A6J2VQ50_CHACN9.890e-1452.31protein phosphatase 1A-like n=1 Tax=Chanos chanos ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig150607contigH-elongata_contig150607:122..1425 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score216.9
Seed ortholog evalue5.7e-54
Seed eggNOG ortholog2880.D8LHX2
KEGG koko:K01090,ko:K04457,ko:K14803,ko:K17499,ko:K19705
KEGG Pathwayko04010,map04010
EggNOG free text desc.protein serine/threonine phosphatase activity
EggNOG OGsCOG0631@1,KOG0698@2759
EC3.1.3.16
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01009,ko03009
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionSerine/threonine protein phosphatase
Ec32 orthologEc-18_000810.1
Exons4
Model size402
Cds size387
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig150607.3374.1prot_H-elongata_contig150607.3374.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig150607 137..1425 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929891.3817177-UTR-H-elongata_contig150607:121..1361622929891.3817177-UTR-H-elongata_contig150607:121..136Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig150607 122..136 +
1691679197.2399557-UTR-H-elongata_contig150607:121..1361691679197.2399557-UTR-H-elongata_contig150607:121..136Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig150607 122..136 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929891.3995607-CDS-H-elongata_contig150607:136..2501622929891.3995607-CDS-H-elongata_contig150607:136..250Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig150607 137..250 +
1691679197.2493532-CDS-H-elongata_contig150607:136..2501691679197.2493532-CDS-H-elongata_contig150607:136..250Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig150607 137..250 +
1622929891.4182794-CDS-H-elongata_contig150607:619..6951622929891.4182794-CDS-H-elongata_contig150607:619..695Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig150607 620..695 +
1691679197.2577384-CDS-H-elongata_contig150607:619..6951691679197.2577384-CDS-H-elongata_contig150607:619..695Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig150607 620..695 +
1622929891.4392195-CDS-H-elongata_contig150607:1044..11391622929891.4392195-CDS-H-elongata_contig150607:1044..1139Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig150607 1045..1139 +
1691679197.271324-CDS-H-elongata_contig150607:1044..11391691679197.271324-CDS-H-elongata_contig150607:1044..1139Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig150607 1045..1139 +
1622929891.4586098-CDS-H-elongata_contig150607:1323..14251622929891.4586098-CDS-H-elongata_contig150607:1323..1425Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig150607 1324..1425 +
1691679197.2787533-CDS-H-elongata_contig150607:1323..14251691679197.2787533-CDS-H-elongata_contig150607:1323..1425Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig150607 1324..1425 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig150607.3374.1

>prot_H-elongata_contig150607.3374.1 ID=prot_H-elongata_contig150607.3374.1|Name=mRNA_H-elongata_contig150607.3374.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=129bp
MACDGVWDVMGNDEACIFLRRLIQEGCRDLGDMLERLQDACLAKSSMDNM
SVLMISFRAAWDEGPHLHKSARFILQWGCEEVLRWLSVNNFGQYQEDFEK
HVIDGATLLSLTEEDLHYKLRLKKVTLR*
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mRNA from alignment at H-elongata_contig150607:122..1425+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig150607.3374.1 ID=mRNA_H-elongata_contig150607.3374.1|Name=mRNA_H-elongata_contig150607.3374.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1304bp|location=Sequence derived from alignment at H-elongata_contig150607:122..1425+ (Himanthalia elongata Himel1 dioecious)
GACGAGTTCCTCGTCATGGCTTGCGACGGCGTCTGGGATGTAATGGGAAA
TGATGAGGCGTGTATTTTCCTCCGGAGACTTATTCAAGAAGGGTGCAGAG
ATCTTGGCGATATGCTCGAACGCTTACAGGTTCATGTAAACAAGGGAATT
TGGAGGACAATATATGAATATTTCGGAGGCTAGATGCGCGACTACAAATT
GACATTATTGGGTGGTTTCGCACGTAAAAATCTTTGTCCCCACGCTCGGA
GTGGTTCTGTTCTGAAAGATGAACGGCAGTGATGATGTCGGCGTCGCCGC
TCGAGGAGATCCCGTATCTGACCAAAACTTGCGCTCGTTTTAGATGTCAC
AGATTTGCGTGCGTTGATAGAAGGCTACATACGCCCACCCCACTTAACTC
ACAAAGCCTGCTAGCTCGCATAATTGAGGAGGTAGATGGAAGCAACATCT
TCCTCACCGCCATCGGCTCTCGCTTGAATACATCCTGGACAATCGCAGGA
TGCGTGCCTCGCAAAGTCGAGTATGGACAACATGTCGGTGCTGATGATCT
CTTTTAGGGCGGCATGGGACGAGGGTGAGGTTCGTTGGTATAGTGCCGTG
TAATGGTTGTACATTTATCAATCTCTTGCATCTCCAGATATTTCCGTATT
CTATGAGATACCTTTATAAGCGAGCCTTGCCGACACTGGTCCGCCGTAGC
ACTTGGCTATGGTGCCACAGAAAAGTTCATCATTATTAATTACGAGGTTT
GACATTGCGATATTATGGTGTTCTATCAGTTGTGCCGTGCGATAAGCTAT
CGTTCCAATGATCAAACGACGTCAACCATGCACTTCACTTCGAAACATTT
TTATTTCTAAGTTGCTACAGTTGGAATTTGTCCTCATCATATTGCACATT
TGTTTCGGAAACATACACGAAAGGTCCTCATTTGCACAAGTCGGCTCGAT
TCATCCTGCAGTGGGGATGCGAAGAAGTTTTGAGATGGCTCTCAGTCAAC
AACTTCGGGCAATACCAGGTACAGTATGTATCTACTTTTGACACGTGACG
ACTGCACGAAGTGAGAGAAACGCCTATTCCGTCGGACGCGTGTCCTTATG
CAGGCCTTCGAGATCCTCAACCCCTTTGATTTTTCATCGAAGCTAAAAGG
CGGAGACAGCTGTTTGACATGACCGAAAATATTTTACCGAGAAAACCTTC
AGGAGGACTTTGAAAAGCATGTGATCGATGGAGCTACGCTGCTAAGCCTG
ACGGAGGAAGATTTGCATTACAAACTTCGTCTCAAAAAGGTAACTCTTCG
TTAA
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Coding sequence (CDS) from alignment at H-elongata_contig150607:122..1425+

>mRNA_H-elongata_contig150607.3374.1 ID=mRNA_H-elongata_contig150607.3374.1|Name=mRNA_H-elongata_contig150607.3374.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=774bp|location=Sequence derived from alignment at H-elongata_contig150607:122..1425+ (Himanthalia elongata Himel1 dioecious)
ATGGCTTGCGACGGCGTCTGGGATGTAATGGGAAATGATGAGGCGTGTAT
TTTCCTCCGGAGACTTATTCAAGAAGGGTGCAGAGATCTTGGCGATATGC
TCGAACGCTTACAGATGGCTTGCGACGGCGTCTGGGATGTAATGGGAAAT
GATGAGGCGTGTATTTTCCTCCGGAGACTTATTCAAGAAGGGTGCAGAGA
TCTTGGCGATATGCTCGAACGCTTACAGGATGCGTGCCTCGCAAAGTCGA
GTATGGACAACATGTCGGTGCTGATGATCTCTTTTAGGGCGGCATGGGAC
GAGGGATGCGTGCCTCGCAAAGTCGAGTATGGACAACATGTCGGTGCTGA
TGATCTCTTTTAGGGCGGCATGGGACGAGGGTCCTCATTTGCACAAGTCG
GCTCGATTCATCCTGCAGTGGGGATGCGAAGAAGTTTTGAGATGGCTCTC
AGTCAACAACTTCGGGCAATACCAGGTCCTCATTTGCACAAGTCGGCTCG
ATTCATCCTGCAGTGGGGATGCGAAGAAGTTTTGAGATGGCTCTCAGTCA
ACAACTTCGGGCAATACCAGGAGGACTTTGAAAAGCATGTGATCGATGGA
GCTACGCTGCTAAGCCTGACGGAGGAAGATTTGCATTACAAACTTCGTCT
CAAAAAGGTAACTCTTCGTTAAGAGGACTTTGAAAAGCATGTGATCGATG
GAGCTACGCTGCTAAGCCTGACGGAGGAAGATTTGCATTACAAACTTCGT
CTCAAAAAGGTAACTCTTCGTTAA
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