mRNA_H-elongata_contig15029.3360.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig15029.3360.1
Unique NamemRNA_H-elongata_contig15029.3360.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig15029.3360.1 vs. uniprot
Match: A0A6H5L7Y8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7Y8_9PHAE)

HSP 1 Score: 236 bits (601), Expect = 6.440e-69
Identity = 119/169 (70.41%), Postives = 137/169 (81.07%), Query Frame = 1
Query:    4 KVTELLKGEHVCINSDGWISCANDSYMSLTVSLITRAWKLITLSVDCRKLAGTTTGEALAAGITAAVAKHDIKGKVTKITTDCEPSMVKMGRILEENG-LCTHVGCYNHRLESTNSIAFNGPMVKKAMTLARGLVTWYTISSQMADRLA*FVRTYLGVEKKRVLQDVVT 507
            KV+ L++GE VCI SDGW SCAND+YMSLT +LIT AWKL+TLSVDC K  GTTTG+ALAAGI A VAKH + GKVT +TTDCEPSMVKMGR+L  +  + T +GC N+RLEST+SI FNGP VKK M LARGLVT Y  SSQ ADRL  FV+TYLGV+ KRV+QDVVT
Sbjct:   31 KVSRLIEGEQVCITSDGWTSCANDTYMSLTFTLITSAWKLVTLSVDCSKSEGTTTGDALAAGIKATVAKHGLTGKVTAVTTDCEPSMVKMGRLLAGDATVSTQIGCCNYRLESTSSIVFNGPRVKKVMVLARGLVTRYPTSSQAADRLKQFVKTYLGVDNKRVIQDVVT 199          
BLAST of mRNA_H-elongata_contig15029.3360.1 vs. uniprot
Match: A0A6H5KUY5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUY5_9PHAE)

HSP 1 Score: 219 bits (557), Expect = 1.810e-64
Identity = 127/249 (51.00%), Postives = 162/249 (65.06%), Query Frame = 1
Query:    1 SKVTELLKGEHVCINSDGWISCANDSYMSLTVSLITRAWKLITLSVDCRKLAGTTTGEALAAGITAAVAKHDIKGKVTKITTDCEPSMVKMGRILEENGL-CTHVGCYNHRLESTNSIAFNGPMVKKAMTLARGLVTWYTISSQMADRLA*FVRTYLGVEKKRVLQDVVTRWSSKCTMVERLLELRELIKKHEEADKLEPLLTTADRAVLEMVLPVLQPFMQAQKLLENRKYVTGSLVVPFIHELRTSL 744
            S+V  +L  E+V I +DGW S +N+SYMSLTV+ I   W+L  LS++C K  G+T GE LA  IT+ + +H + G+VT   TDCEPSMVK GR+LE  G    H+GC NHR+EST S  FNG  +  A+  AR +V  Y  SSQM+ RLA F+   L +    VLQDV TRW S   M+ERLL L + IK HE  D + P+L+  D  VL ++ P+L+PFMQAQK LE  KYVTGS+ VP I ELR  L
Sbjct:   66 SEVALMLDDEYVAITTDGWTSRSNESYMSLTVAYIDVGWQLHHLSLNCTKHTGSTHGEDLAREITSMIERHGLTGRVTACVTDCEPSMVKAGRLLEVGGSNLEHIGCSNHRMESTTSSVFNGKSLG-ALAKARAVVGRYKRSSQMSGRLAVFIGI-LKLSPLSVLQDVETRWWSSWAMIERLLYLMKAIKLHESTDNIAPVLSETDWEVLRLIEPILRPFMQAQKDLEGAKYVTGSMTVPKIGELRNGL 312          
BLAST of mRNA_H-elongata_contig15029.3360.1 vs. uniprot
Match: A0A6H5JJV8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJV8_9PHAE)

HSP 1 Score: 215 bits (548), Expect = 1.080e-63
Identity = 120/247 (48.58%), Postives = 160/247 (64.78%), Query Frame = 1
Query:    4 KVTELLKGEHVCINSDGWISCANDSYMSLTVSLITRAWKLITLSVDCRKLAGTTTGEALAAGITAAVAKHDIKGKVTKITTDCEPSMVKMGRILEENGLCTHVGCYNHRLESTNSIAFNGPMVKKAMTLARGLVTWYTISSQMADRLA*FVRTYLGVEKKRVLQDVVTRWSSKCTMVERLLELRELIKKHEEADKLEPLLTTADRAVLEMVLPVLQPFMQAQKLLENRKYVTGSLVVPFIHELRTSL 744
            +V   L GEHV + SDGW S +ND+YM  T + I+  + L+ L V+C+K  G TTGE L   + A +A++ +  +    TTDCEPSMVK GR+LEEN   TH+GC+ HRLES  S AF GP V KA+ LAR +VT Y +SSQ +DRL   +R  + VE+K+V+QDV TRW S    + RLL LR  I +HE  D + PLL   D  VL++V P+ +PF+ +QK  E  K VT SLV+P+I +LR  L
Sbjct:   40 EVLGRLTGEHVAVTSDGWTSASNDTYMYFTCTYISSNFDLVALCVECKKHGGRTTGEDLVEAVKAMIARNGLTSRTVATTTDCEPSMVKAGRLLEENEGVTHLGCFCHRLESITSQAFGGPGVSKALALARRVVTRYNMSSQASDRLE-QMRDIVQVERKKVVQDVETRWWSTYASICRLLSLRRPITEHERIDSIPPLLKEKDWEVLQVVEPLSKPFILSQKHREASKDVTVSLVIPYIADLRDEL 285          
BLAST of mRNA_H-elongata_contig15029.3360.1 vs. uniprot
Match: D8LCS5_ECTSI (Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCS5_ECTSI)

HSP 1 Score: 213 bits (542), Expect = 4.350e-62
Identity = 127/249 (51.00%), Postives = 160/249 (64.26%), Query Frame = 1
Query:    1 SKVTELLKGEHVCINSDGWISCANDSYMSLTVSLITRAWKLITLSVDCRKLAGTTTGEALAAGITAAVAKHDIKGKVTKITTDCEPSMVKMGRILEENG-LCTHVGCYNHRLESTNSIAFNGPMVKKAMTLARGLVTWYTISSQMADRLA*FVRTYLGVEKKRVLQDVVTRWSSKCTMVERLLELRELIKKHEEADKLEPLLTTADRAVLEMVLPVLQPFMQAQKLLENRKYVTGSLVVPFIHELRTSL 744
            S+V  +L  E V I +DGW S  N+SYMSLTV+ I   WKL  LS+DC K  GTTTGE LAA +   V +HD+ G+V    TDCEPSM+K GR+LE +G   +H+GC NHR+EST S  FNG  +  A+ LAR LV  Y  SSQMA RL       L +E   V+QDV TRW S   MV RLL L + IK HE  D++ PLL+  D  VL ++ P+L+PFM+AQK LE  +YVTGS+ +  + ELR  L
Sbjct:   30 SEVALMLDAEFVAITTDGWTSRNNESYMSLTVAYIDYEWKLHHLSLDCAKHTGTTTGEDLAALVAGMVERHDLTGRVIACVTDCEPSMIKAGRLLEVDGSTISHIGCSNHRMESTTSSVFNGRSLG-ALGLARTLVGRYKKSSQMAARLVQLCGI-LQMEPLSVMQDVETRWWSTWAMVVRLLYLMKAIKLHESMDEVHPLLSDTDWEVLRLIEPILRPFMKAQKDLEGAQYVTGSMTIGKMAELREGL 276          
BLAST of mRNA_H-elongata_contig15029.3360.1 vs. uniprot
Match: A0A6H5JHP9_9PHAE (Autophagy protein 5 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHP9_9PHAE)

HSP 1 Score: 209 bits (531), Expect = 1.860e-58
Identity = 119/242 (49.17%), Postives = 155/242 (64.05%), Query Frame = 1
Query:   19 LKGEHVCINSDGWISCANDSYMSLTVSLITRAWKLITLSVDCRKLAGTTTGEALAAGITAAVAKHDIKGKVTKITTDCEPSMVKMGRILEENGLCTHVGCYNHRLESTNSIAFNGPMVKKAMTLARGLVTWYTISSQMADRLA*FVRTYLGVEKKRVLQDVVTRWSSKCTMVERLLELRELIKKHEEADKLEPLLTTADRAVLEMVLPVLQPFMQAQKLLENRKYVTGSLVVPFIHELRTSL 744
            + GEHV + SDGW   +ND+YMS T + I+  + L+ L ++C+K    T GE L   + A +A++ + G+   ITTDCE SMVK GR+LEEN   TH+GC+ HRLES  S AF GP V KA+ LARG+VT YTISSQ +DRL   V   + VE+K V+QDV TRW S    + RL+ LR  I +HE  D   PLL   D  VL++V  +L+PFM AQK LE  K VT  LV P+I +L+  L
Sbjct:    1 MTGEHVALTSDGWTPASNDTYMSFTCTYISSNFDLVALCLECKKHGWRTAGEDLVEAVKAMIARNGLTGRTVAITTDCELSMVKAGRLLEENEGVTHLGCFCHRLESITSQAFGGPGVSKALALARGVVTRYTISSQASDRLE-QVCDIVQVERKNVVQDVETRWWSTYVSICRLISLRRPITEHEIIDSTPPLLKEKDWEVLQLVESLLKPFMTAQKHLEASKEVTVRLVSPYIADLQDGL 241          
BLAST of mRNA_H-elongata_contig15029.3360.1 vs. uniprot
Match: A0A6H5KVI1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVI1_9PHAE)

HSP 1 Score: 168 bits (426), Expect = 1.340e-46
Identity = 101/228 (44.30%), Postives = 136/228 (59.65%), Query Frame = 1
Query:   61 SCANDSYMSLTVSLITRAWKLITLSVDCRKLAGTTTGEALAAGITAAVAKHDIKGKVTKITTDCEPSMVKMGRILEENGLCTHVGCYNHRLESTNSIAFNGPMVKKAMTLARGLVTWYTISSQMADRLA*FVRTYLGVEKKRVLQDVVTRWSSKCTMVERLLELRELIKKHEEADKLEPLLTTADRAVLEMVLPVLQPFMQAQKLLENRKYVTGSLVVPFIHELRTSL 744
            S +ND+YM+ T + I+  + L+ L ++ +K  G TTGE L   + A +A++ + G+    TTDCEP MVK GR+LEEN   +H+GC+ HR ES  S AF GP V KA+ L RG+VT YT+SSQ ++RL       + VE+K+V+QDV TRW S                   E D + PLL   D  VL++V P+L PFM AQK LE  K VT SLV  +I +LR  L
Sbjct:    3 SASNDTYMTFTCTYISSNFDLVALCLEYKKHGGRTTGEDLVEAVKAMIARNGLTGRTVATTTDCEPFMVKAGRLLEENEGVSHLGCFCHRFESITSQAFGGPGVSKALALPRGVVTRYTMSSQASNRLEQMC-DIVQVERKKVVQDVETRWWST----------------PREIDSIPPLLNEKDWEVLQLVEPLLHPFMTAQKHLEASKGVTVSLVTAYIADLRDEL 213          
BLAST of mRNA_H-elongata_contig15029.3360.1 vs. uniprot
Match: A0A2D0SFW7_ICTPU (zinc finger BED domain-containing protein 1-like n=2 Tax=Ictalurus punctatus TaxID=7998 RepID=A0A2D0SFW7_ICTPU)

HSP 1 Score: 90.5 bits (223), Expect = 4.340e-17
Identity = 74/253 (29.25%), Postives = 123/253 (48.62%), Query Frame = 1
Query:    4 KVTELLK-GEHVCINSDGWISCANDSYMSLTVSLITRAWKLITLSVDCRKLAGTTTGEALAAGITAAVAKHDI-KGKVTKITTDCEPSMVKMGRILEENGLCTHVGCYNHRLESTNSIAFNGPMVKKAMTLARGLVTWYTISSQMADRLA*FVRTYLGVEKKRVLQDVVTRWSSKCTMVERLLE----LRELIKKHEEADKLEPLLTTADRAVLEMVLPVLQPFMQAQKLLENRKYVTGSLVVPFIHELRTSL 744
            +V E LK G +    +D W S   + Y+SLTV  I + WKL++L +         TGEA+AAG+T A+A   + + +   ITTD   +++K   +       T + C+ HRL S          V +A+ + + +V  ++ S +    LA     Y  + + +++ +  TRW S+  MV R+LE    + E++ K ++   L P  T  D  VLE +   L P ++    L    YV+ S + P +H   TS+
Sbjct:  142 RVQEQLKSGSYFATTADLWSSRTLEPYLSLTVHFIDQDWKLVSLCLQTVYFPEDHTGEAIAAGLTDALASWGLSEERQVCITTDSGTNIIKAAEL----NRWTRLQCFGHRLNSAIEKVHQDKRVDRAVGVCKKVVAAFSYSWKKKLDLAAAQEEY-HLPQHKLISETPTRWGSRQQMVRRVLEQKRAITEVLSKDKKTRSLVP--TWQDVDVLESIDAALSPLLEFTDALSGESYVSVSFLKPVMHLFNTSI 387          
BLAST of mRNA_H-elongata_contig15029.3360.1 vs. uniprot
Match: UPI001EEB43F9 (zinc finger BED domain-containing protein 4-like n=2 Tax=Homalodisca vitripennis TaxID=197043 RepID=UPI001EEB43F9)

HSP 1 Score: 87.8 bits (216), Expect = 2.520e-16
Identity = 70/242 (28.93%), Postives = 127/242 (52.48%), Query Frame = 1
Query:   13 ELLKGEHVCINSDGWISCANDSYMSLTVSLITRAWKLITLSVDCRKLAGTTTGEALAAGITAAVAKHDIKGKVTKITTDCEPSMVKMGRILEENGLCTHVGCYNHRLESTNSIAFNGPMVKKAMT-LARGLVTWYTISSQMADRLA*FVRTYLGVEKKRVLQDVVTRWSSKCTMVERLLELRELIKKHEEADKLE-PLLTTADRAVLEMVLPVLQPFMQAQKLLENRKYVTGSLVVPFIHEL 732
            E+L   +V + +D W S   +SYM+LT   I+  ++L ++ ++C  +  + T   LA  I   V K  ++GK+  I +D   ++V  G I  E  L  H GC+ H +   N I  +   V +++T   + +V+ +  S+   ++L   V+  LG+E K+++  V TRW+S   M++R+ EL++ +K        E P+LT  +      ++ VL+PF +  + +    Y+T S V+ FI+ L
Sbjct:   16 EMLTVSNVTLTTDTWTSSNTESYMALTSHHISNDFELKSILLECSVIRSSHTSVNLAVEIDKIVKKFHLEGKIMIIVSDNASNIV--GAITNELKL-KHFGCFAHTI---NLILQDALKVCQSLTDRIKAIVSHFKRSTSATEKLR-EVQKNLGLEPKKLVLQVATRWNSTFYMLQRISELKDAVKTTVALINKEIPVLTEDEWKTCSELVMVLEPFEEVTRNISGENYLTASQVIGFINGL 250          
BLAST of mRNA_H-elongata_contig15029.3360.1 vs. uniprot
Match: UPI001EEC5FDD (zinc finger BED domain-containing protein 4-like n=4 Tax=Homalodisca vitripennis TaxID=197043 RepID=UPI001EEC5FDD)

HSP 1 Score: 87.8 bits (216), Expect = 3.780e-16
Identity = 70/242 (28.93%), Postives = 127/242 (52.48%), Query Frame = 1
Query:   13 ELLKGEHVCINSDGWISCANDSYMSLTVSLITRAWKLITLSVDCRKLAGTTTGEALAAGITAAVAKHDIKGKVTKITTDCEPSMVKMGRILEENGLCTHVGCYNHRLESTNSIAFNGPMVKKAMT-LARGLVTWYTISSQMADRLA*FVRTYLGVEKKRVLQDVVTRWSSKCTMVERLLELRELIKKHEEADKLE-PLLTTADRAVLEMVLPVLQPFMQAQKLLENRKYVTGSLVVPFIHEL 732
            E+L   +V + +D W S   +SYM+LT   I+  ++L ++ ++C  +  + T   LA  I   V K  ++GK+  I +D   ++V  G I  E  L  H GC+ H +   N I  +   V +++T   + +V+ +  S+   ++L   V+  LG+E K+++  V TRW+S   M++R+ EL++ +K        E P+LT  +      ++ VL+PF +  + +    Y+T S V+ FI+ L
Sbjct:  196 EMLTVSNVTLTTDTWTSSNTESYMALTSHHISNDFELKSILLECSVIRSSHTSVNLAVEIDKIVKKFHLEGKIMIIVSDNASNIV--GAITNELKL-KHFGCFAHTI---NLILQDALKVCQSLTDRIKAIVSHFKRSTSATEKLR-EVQKNLGLEPKKLVLQVATRWNSTFYMLQRISELKDAVKTTVALINKEIPVLTEDEWKTCSELVMVLEPFEEVTRNISGENYLTASQVIGFINGL 430          
BLAST of mRNA_H-elongata_contig15029.3360.1 vs. uniprot
Match: UPI00094EB9E0 (zinc finger BED domain-containing protein 1-like n=1 Tax=Hippocampus comes TaxID=109280 RepID=UPI00094EB9E0)

HSP 1 Score: 84.0 bits (206), Expect = 7.730e-15
Identity = 70/248 (28.23%), Postives = 112/248 (45.16%), Query Frame = 1
Query:   10 TELLKGEHVCINSDGWISCANDSYMSLTVSLITRAWKLITLSVDCRKLAGTTTGEALAAGITAAVAKHDI-KGKVTKITTDCEPSMVKMGRILEENGLCTHVGCYNHRLESTNSIAFNGPMVKKAMTLARGLVTWYTISSQMADRLA*FVRTYLGVEKKRVLQDVVTRWSSKCTMVERLLELRELIKKHEEADKLEPLLTTA--DRAVLEMVLPVLQPFMQAQKLLENRKYVTGSLVVPFIHELRTSL 744
            TEL    H    +D W+S   + Y  +TV  I+  W L +  +         TGE LAAG+  A+    + + K+  ITTD   ++ K   + +  GL     C+ HRL            +++A+ L + +V+ ++ SS+    LA  V+ YLG+    +  +  TRW S+ TM++R+LE    I    + DK    L  +  D  VLE V   L P       L   +YV+ S + P +     S+
Sbjct:  181 TELAAVRHFAATTDMWLSHTMEPYFGVTVHFISDDWLLQSHRLQTSYFPDEHTGELLAAGLQEALDSWGLPQNKLVAITTDDGDNIKKAVELNKWTGL----QCFGHRLHRAIGKGLRNEGIQQAIALCKKIVSTFSYSSKKRRDLA-IVQNYLGLPNHMLTAETPTRWGSRQTMIQRVLEQERAISHVLKDDKKSRHLVPSWQDLDVLEAVNKALGPLQDFTDALSGEQYVSVSYLKPVLKLFNASI 423          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig15029.3360.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L7Y8_9PHAE6.440e-6970.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KUY5_9PHAE1.810e-6451.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JJV8_9PHAE1.080e-6348.58Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
D8LCS5_ECTSI4.350e-6251.00Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ec... [more]
A0A6H5JHP9_9PHAE1.860e-5849.17Autophagy protein 5 n=1 Tax=Ectocarpus sp. CCAP 13... [more]
A0A6H5KVI1_9PHAE1.340e-4644.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A2D0SFW7_ICTPU4.340e-1729.25zinc finger BED domain-containing protein 1-like n... [more]
UPI001EEB43F92.520e-1628.93zinc finger BED domain-containing protein 4-like n... [more]
UPI001EEC5FDD3.780e-1628.93zinc finger BED domain-containing protein 4-like n... [more]
UPI00094EB9E07.730e-1528.23zinc finger BED domain-containing protein 1-like n... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig15029contigH-elongata_contig15029:6141..6884 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score119.0
Seed ortholog evalue1.5e-24
Seed eggNOG ortholog2880.D7G5Z0
EggNOG free text desc.protein dimerization activity
EggNOG OGsKOG1121@1,KOG1121@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size744
Cds size369
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig15029.3360.1prot_H-elongata_contig15029.3360.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig15029 6222..6590 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929889.9387949-UTR-H-elongata_contig15029:6140..62211622929889.9387949-UTR-H-elongata_contig15029:6140..6221Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig15029 6141..6221 +
1691679196.852761-UTR-H-elongata_contig15029:6140..62211691679196.852761-UTR-H-elongata_contig15029:6140..6221Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig15029 6141..6221 +
1622929889.9781084-UTR-H-elongata_contig15029:6590..68841622929889.9781084-UTR-H-elongata_contig15029:6590..6884Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig15029 6591..6884 +
1691679196.8736093-UTR-H-elongata_contig15029:6590..68841691679196.8736093-UTR-H-elongata_contig15029:6590..6884Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig15029 6591..6884 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929889.9573097-CDS-H-elongata_contig15029:6221..65901622929889.9573097-CDS-H-elongata_contig15029:6221..6590Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15029 6222..6590 +
1691679196.8638387-CDS-H-elongata_contig15029:6221..65901691679196.8638387-CDS-H-elongata_contig15029:6221..6590Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15029 6222..6590 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig15029.3360.1

>prot_H-elongata_contig15029.3360.1 ID=prot_H-elongata_contig15029.3360.1|Name=mRNA_H-elongata_contig15029.3360.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=123bp
MSLTVSLITRAWKLITLSVDCRKLAGTTTGEALAAGITAAVAKHDIKGKV
TKITTDCEPSMVKMGRILEENGLCTHVGCYNHRLESTNSIAFNGPMVKKA
MTLARGLVTWYTISSQMADRLA*
back to top

mRNA from alignment at H-elongata_contig15029:6141..6884+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig15029.3360.1 ID=mRNA_H-elongata_contig15029.3360.1|Name=mRNA_H-elongata_contig15029.3360.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=744bp|location=Sequence derived from alignment at H-elongata_contig15029:6141..6884+ (Himanthalia elongata Himel1 dioecious)
AGCAAGGTCACTGAGTTGCTGAAGGGTGAGCACGTGTGTATCAACTCGGA CGGCTGGATCTCTTGCGCTAATGACTCCTACATGTCGCTTACAGTAAGTC TCATCACCCGCGCGTGGAAGCTCATCACTCTCTCGGTGGACTGCAGAAAG TTAGCAGGAACGACAACTGGTGAAGCTCTGGCCGCTGGTATCACGGCCGC TGTAGCCAAGCATGACATCAAAGGCAAGGTCACCAAGATTACCACTGACT GCGAGCCCTCGATGGTAAAGATGGGGCGCATTCTCGAAGAAAATGGTCTC TGCACCCACGTCGGCTGCTACAACCATCGGCTCGAAAGCACTAACTCCAT TGCGTTCAACGGGCCGATGGTCAAGAAGGCGATGACGCTGGCCCGGGGCC TGGTAACGTGGTACACAATATCAAGCCAGATGGCCGACCGACTTGCGTAG TTCGTCCGAACCTACCTTGGTGTCGAGAAAAAGAGGGTGCTCCAAGATGT GGTAACTAGGTGGTCGTCCAAGTGCACCATGGTGGAGCGGCTGCTGGAGT TGAGGGAACTAATCAAAAAGCATGAGGAGGCGGACAAGCTGGAGCCGCTG CTGACGACCGCAGACAGGGCGGTGCTTGAGATGGTACTTCCTGTGCTGCA GCCGTTCATGCAAGCGCAGAAATTGCTGGAGAACCGGAAATACGTGACGG GAAGCTTGGTCGTGCCCTTCATCCACGAACTCCGCACTAGCCTC
back to top

Coding sequence (CDS) from alignment at H-elongata_contig15029:6141..6884+

>mRNA_H-elongata_contig15029.3360.1 ID=mRNA_H-elongata_contig15029.3360.1|Name=mRNA_H-elongata_contig15029.3360.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=738bp|location=Sequence derived from alignment at H-elongata_contig15029:6141..6884+ (Himanthalia elongata Himel1 dioecious)
ATGTCGCTTACAGTAAGTCTCATCACCCGCGCGTGGAAGCTCATCACTCT
CTCGGTGGACTGCAGAAAGTTAGCAGGAACGACAACTGGTGAAGCTCTGG
CCGCTGGTATCACGGCCGCTGTAGCCAAGCATGACATCAAAGGCAAGGTC
ACCAAGATTACCACTGACTGCGAGCCCTCGATGGTAAAGATGGGGCGCAT
TCTCGAAGAAAATGGTCTCTGCACCCACGTCGGCTGCTACAACCATCGGC
TCGAAAGCACTAACTCCATTGCGTTCAACGGGCCGATGGTCAAGAAGGCG
ATGACGCTGGCCCGGGGCCTGGTAACGTGGTACACAATATCAAGCCAGAT
GGCCGACCGACTTGCGTAGATGTCGCTTACAGTAAGTCTCATCACCCGCG
CGTGGAAGCTCATCACTCTCTCGGTGGACTGCAGAAAGTTAGCAGGAACG
ACAACTGGTGAAGCTCTGGCCGCTGGTATCACGGCCGCTGTAGCCAAGCA
TGACATCAAAGGCAAGGTCACCAAGATTACCACTGACTGCGAGCCCTCGA
TGGTAAAGATGGGGCGCATTCTCGAAGAAAATGGTCTCTGCACCCACGTC
GGCTGCTACAACCATCGGCTCGAAAGCACTAACTCCATTGCGTTCAACGG
GCCGATGGTCAAGAAGGCGATGACGCTGGCCCGGGGCCTGGTAACGTGGT
ACACAATATCAAGCCAGATGGCCGACCGACTTGCGTAG
back to top