mRNA_H-elongata_contig150157.3354.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig150157.3354.1
Unique NamemRNA_H-elongata_contig150157.3354.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig150157.3354.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig150157contigH-elongata_contig150157:222..574 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size353
Cds size318
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig150157.3354.1prot_H-elongata_contig150157.3354.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig150157 242..559 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929888.908274-UTR-H-elongata_contig150157:221..2411622929888.908274-UTR-H-elongata_contig150157:221..241Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig150157 222..241 +
1691679196.3565514-UTR-H-elongata_contig150157:221..2411691679196.3565514-UTR-H-elongata_contig150157:221..241Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig150157 222..241 +
1622929888.9670172-UTR-H-elongata_contig150157:559..5741622929888.9670172-UTR-H-elongata_contig150157:559..574Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig150157 560..574 +
1691679196.3862362-UTR-H-elongata_contig150157:559..5741691679196.3862362-UTR-H-elongata_contig150157:559..574Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig150157 560..574 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929888.9477735-CDS-H-elongata_contig150157:241..5591622929888.9477735-CDS-H-elongata_contig150157:241..559Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig150157 242..559 +
1691679196.3653345-CDS-H-elongata_contig150157:241..5591691679196.3653345-CDS-H-elongata_contig150157:241..559Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig150157 242..559 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig150157.3354.1

>prot_H-elongata_contig150157.3354.1 ID=prot_H-elongata_contig150157.3354.1|Name=mRNA_H-elongata_contig150157.3354.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=106bp
MGKLSLMLNGSGFAGRVWFFAVASTHVACSVPINQLFVCDNISHGAARAR
LRFTWILRGGAISDTTATVSSSPSCRAGGSGPGTFQRTIFEKQCKETMQR
SKIPA*
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mRNA from alignment at H-elongata_contig150157:222..574+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig150157.3354.1 ID=mRNA_H-elongata_contig150157.3354.1|Name=mRNA_H-elongata_contig150157.3354.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=353bp|location=Sequence derived from alignment at H-elongata_contig150157:222..574+ (Himanthalia elongata Himel1 dioecious)
GGAATGGGTAACATTGTGAGATGGGTAAACTAAGCCTTATGCTAAATGGA
AGTGGTTTCGCCGGCCGGGTGTGGTTCTTCGCGGTAGCTTCCACGCATGT
TGCCTGCTCAGTGCCAATAAATCAACTGTTTGTTTGTGATAATATTTCGC
ATGGGGCGGCGCGCGCGCGCCTTAGATTCACGTGGATCCTTCGCGGAGGA
GCTATTTCGGATACCACAGCCACCGTAAGCTCGAGCCCATCGTGCCGTGC
CGGGGGGAGTGGGCCGGGGACGTTTCAGCGTACAATATTTGAGAAACAAT
GCAAAGAAACAATGCAAAGAAGCAAAATACCGGCGTGATGTTTTTGCTGC
GAC
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Coding sequence (CDS) from alignment at H-elongata_contig150157:222..574+

>mRNA_H-elongata_contig150157.3354.1 ID=mRNA_H-elongata_contig150157.3354.1|Name=mRNA_H-elongata_contig150157.3354.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=636bp|location=Sequence derived from alignment at H-elongata_contig150157:222..574+ (Himanthalia elongata Himel1 dioecious)
ATGGGTAAACTAAGCCTTATGCTAAATGGAAGTGGTTTCGCCGGCCGGGT
GTGGTTCTTCGCGGTAGCTTCCACGCATGTTGCCTGCTCAGTGCCAATAA
ATCAACTGTTTGTTTGTGATAATATTTCGCATGGGGCGGCGCGCGCGCGC
CTTAGATTCACGTGGATCCTTCGCGGAGGAGCTATTTCGGATACCACAGC
CACCGTAAGCTCGAGCCCATCGTGCCGTGCCGGGGGGAGTGGGCCGGGGA
CGTTTCAGCGTACAATATTTGAGAAACAATGCAAAGAAACAATGCAAAGA
AGCAAAATACCGGCGTGAATGGGTAAACTAAGCCTTATGCTAAATGGAAG
TGGTTTCGCCGGCCGGGTGTGGTTCTTCGCGGTAGCTTCCACGCATGTTG
CCTGCTCAGTGCCAATAAATCAACTGTTTGTTTGTGATAATATTTCGCAT
GGGGCGGCGCGCGCGCGCCTTAGATTCACGTGGATCCTTCGCGGAGGAGC
TATTTCGGATACCACAGCCACCGTAAGCTCGAGCCCATCGTGCCGTGCCG
GGGGGAGTGGGCCGGGGACGTTTCAGCGTACAATATTTGAGAAACAATGC
AAAGAAACAATGCAAAGAAGCAAAATACCGGCGTGA
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