mRNA_H-elongata_contig150037.3352.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig150037.3352.1
Unique NamemRNA_H-elongata_contig150037.3352.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig150037.3352.1 vs. uniprot
Match: D8LL83_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL83_ECTSI)

HSP 1 Score: 120 bits (302), Expect = 5.730e-30
Identity = 66/118 (55.93%), Postives = 74/118 (62.71%), Query Frame = 1 
Query:    1 GCSSGRCFECCLKSGAPCEAHAKQAERKQREDQLL-----------------------AIPGEGSSEDNA----RLPAGAFKEVAFHSIGETATLWCLKDFVYGRSTQAAMEALSRTK 273
            GCSS  CFECCLKSG PCEAHAKQ ERK RED+LL                        +PG G+ +D A    RLP GAFKE AF + GETATLWCLKDFV G+ TQ AME L+RT+
Sbjct:  385 GCSSESCFECCLKSGKPCEAHAKQVERKHREDELLLGRXXXXXXXXXXXXGSCGLMSPGLPG-GAFDDGAAPRARLPPGAFKEAAFQATGETATLWCLKDFVCGKDTQTAMETLNRTE 501
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BLAST of mRNA_H-elongata_contig150037.3352.1 vs. uniprot
Match: A0A6H5JLF6_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLF6_9PHAE)

HSP 1 Score: 114 bits (286), Expect = 1.000e-27
Identity = 66/120 (55.00%), Postives = 73/120 (60.83%), Query Frame = 1 
Query:    1 GCSSGRCFECCLKSGAPCEAHAKQAERKQREDQLL-------------------------AIPGEGSSEDN----ARLPAGAFKEVAFHSIGETATLWCLKDFVYGRSTQAAMEALSRTK 273
            GCSS  CFECCLKSG PCEAHAKQ ERK RED+LL                          +PG G+ +D     ARLP GAFKE AF   GETATLWCLKDFV G+ TQ AME L+RT+
Sbjct:  638 GCSSESCFECCLKSGKPCEAHAKQVERKHREDELLLGRXXXXXXXXXXXXXXXXGGLMSPGLPG-GAFDDGTAPRARLPPGAFKEAAFQ--GETATLWCLKDFVCGKDTQTAMETLNRTE 754
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig150037.3352.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LL83_ECTSI5.730e-3055.93Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JLF6_9PHAE1.000e-2755.00Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig150037contigH-elongata_contig150037:412..1417 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size273
Cds size273
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929888.7636516-CDS-H-elongata_contig150037:411..5921622929888.7636516-CDS-H-elongata_contig150037:411..592Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig150037 412..592 +
1691679196.306137-CDS-H-elongata_contig150037:411..5921691679196.306137-CDS-H-elongata_contig150037:411..592Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig150037 412..592 +
1622929888.776884-CDS-H-elongata_contig150037:1325..14171622929888.776884-CDS-H-elongata_contig150037:1325..1417Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig150037 1326..1417 +
1691679196.3134832-CDS-H-elongata_contig150037:1325..14171691679196.3134832-CDS-H-elongata_contig150037:1325..1417Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig150037 1326..1417 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig150037.3352.1prot_H-elongata_contig150037.3352.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig150037 412..1417 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig150037.3352.1

>prot_H-elongata_contig150037.3352.1 ID=prot_H-elongata_contig150037.3352.1|Name=mRNA_H-elongata_contig150037.3352.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=91bp
GCSSGRCFECCLKSGAPCEAHAKQAERKQREDQLLAIPGEGSSEDNARLP
AGAFKEVAFHSIGETATLWCLKDFVYGRSTQAAMEALSRTK
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mRNA from alignment at H-elongata_contig150037:412..1417+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig150037.3352.1 ID=mRNA_H-elongata_contig150037.3352.1|Name=mRNA_H-elongata_contig150037.3352.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1006bp|location=Sequence derived from alignment at H-elongata_contig150037:412..1417+ (Himanthalia elongata Himel1 dioecious)
GGTTGCTCTTCGGGGAGGTGTTTCGAGTGCTGTCTCAAGTCCGGCGCGCC
GTGCGAGGCCCACGCCAAGCAAGCGGAGCGGAAGCAGAGGGAGGACCAGC
TGCTGGCCATCCCAGGCGAGGGGTCTTCGGAGGACAACGCGCGCCTGCCC
GCGGGAGCGTTTAAGGAAGTTGCCTTCCACTGTGAGTATGGAGGCGTTTT
CTCTCGCTGGGGAGGGAGGGGGGGGTTACTAAAGAATGTGCTCTATCAAT
TGGTTGGTTGATTTATCGATTGATTGGTTTATTGAATAATTGGTTGCTTT
TTATTTTAAAGCATATGAACTCATTCGAACCCTCCGAACATCTACGCCTT
CTTAGCACCATGAGAGGTGCAGTTCAGGGATCACATATGCTGGTGGGTTC
GTTAGATGGTTGATCGATTTTCATCTGGTTGGTCGGTTGGCTGATAAATT
TTGTTTGATTGGTTAGTTAATTGTTGGTTGATTGGTCGACTCTTGTGGGA
GTCAATTTCTGTTCCTTCCGAAGAAGTCCTATGGCTCTCATCGATATATT
GCTTGCTCCGAGTTGACCCTCGTTTCAAGGATACAAGGCTACGAGGCTCC
CTCCGAGTTGAACTCACACCGAAGACGCGATGAAAACAGCTGTGATCATT
ATTCATGTTTCGCGTCTTCCGACCAAGCCGTCGCTCTTTCTTGTTCTGTG
TCGTCTCGTCTCGACGCCGAGCAACGGTTGGTCATGCTTGCCGATTGCCC
ACCCCCTAATCCCTTCCTGTTTCCCGAGCCCCCCGCCTCCCACCCGTCCA
GATATATATATATTGGTACCAAATATTTTCACTACGACATTGTAGCTCCA
CCGCGTCTCTCATCCACACGCTCCAACAATATTTTCCCTCTCTCCCTCCC
TCTGGCATCGGTAGCCATTGGAGAGACGGCGACGCTCTGGTGCCTCAAGG
ATTTCGTGTACGGAAGGAGCACGCAGGCGGCTATGGAAGCCCTGAGCAGG
ACGAAG
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Coding sequence (CDS) from alignment at H-elongata_contig150037:412..1417+

>mRNA_H-elongata_contig150037.3352.1 ID=mRNA_H-elongata_contig150037.3352.1|Name=mRNA_H-elongata_contig150037.3352.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=546bp|location=Sequence derived from alignment at H-elongata_contig150037:412..1417+ (Himanthalia elongata Himel1 dioecious)
GGTTGCTCTTCGGGGAGGTGTTTCGAGTGCTGTCTCAAGTCCGGCGCGCC
GTGCGAGGCCCACGCCAAGCAAGCGGAGCGGAAGCAGAGGGAGGACCAGC
TGCTGGCCATCCCAGGCGAGGGGTCTTCGGAGGACAACGCGCGCCTGCCC
GCGGGAGCGTTTAAGGAAGTTGCCTTCCACTGGTTGCTCTTCGGGGAGGT
GTTTCGAGTGCTGTCTCAAGTCCGGCGCGCCGTGCGAGGCCCACGCCAAG
CAAGCGGAGCGGAAGCAGAGGGAGGACCAGCTGCTGGCCATCCCAGGCGA
GGGGTCTTCGGAGGACAACGCGCGCCTGCCCGCGGGAGCGTTTAAGGAAG
TTGCCTTCCACTCCATTGGAGAGACGGCGACGCTCTGGTGCCTCAAGGAT
TTCGTGTACGGAAGGAGCACGCAGGCGGCTATGGAAGCCCTGAGCAGGAC
GAAGCCATTGGAGAGACGGCGACGCTCTGGTGCCTCAAGGATTTCGTGTA
CGGAAGGAGCACGCAGGCGGCTATGGAAGCCCTGAGCAGGACGAAG
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