mRNA_H-elongata_contig15000.3348.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig15000.3348.1
Unique NamemRNA_H-elongata_contig15000.3348.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig15000.3348.1 vs. uniprot
Match: D7G934_ECTSI (Haloacid dehalogenase-like hydrolase family protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G934_ECTSI)

HSP 1 Score: 407 bits (1045), Expect = 8.750e-133
Identity = 210/261 (80.46%), Postives = 231/261 (88.51%), Query Frame = 3
Query:  555 VDTVKALRRAGKRTFFVTNNASKSRRQYCLKLEGFGVDGVGVEDIVTSGSALAAYVKRAHPDVHTVYMVGSGGQEEELGLVGLKVVKEATRPPIGMTEDEFRVFEPDPEVGAVVVGLDTAFGFRQLCVASTYIQKGANFVGTNPDVADRVGSLLMPGTGPLLASIQSASGVAPVVVGKPNPLLLRQLMDLNGLDASSTIMVGDRLDTDVKFGNAAGVSSALVLTGVSEAADVVGLPAGGESTPTYIMENLAFLLPAAEAAA 1337
            +DTVKALRRAGKRTFFVTNN+SKSRRQYC+KLEGFGV GVGVEDIVTSGSA+AAYVK +HPDV TVYM+G  G EEEL +VGL+VVKE  RP  GMTEDEFR    DPEVGAVVVGLDT+FGFRQLCVAS+YIQ GA+F+GTNPDVADRVGSLLMPGTGP+L SIQ+ASGVAPVVVGKPNPLL+RQLMD NGL AS T+MVGDRLDTD+ FGNA GVSSALVLTGVSE +DVVGL AGG+ TPTY++E L  LLPAA  AA
Sbjct:   52 LDTVKALRRAGKRTFFVTNNSSKSRRQYCVKLEGFGVHGVGVEDIVTSGSAIAAYVKLSHPDVQTVYMIGEEGLEEELEMVGLRVVKEEARPAPGMTEDEFRENVTDPEVGAVVVGLDTSFGFRQLCVASSYIQSGAHFLGTNPDVADRVGSLLMPGTGPMLTSIQTASGVAPVVVGKPNPLLIRQLMDQNGLAASKTLMVGDRLDTDIMFGNAGGVSSALVLTGVSEMSDVVGLQAGGDKTPTYLLERLGALLPAATEAA 312          
BLAST of mRNA_H-elongata_contig15000.3348.1 vs. uniprot
Match: A0A836CPG6_9STRA (Haloacid dehalogenase-like hydrolase family protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CPG6_9STRA)

HSP 1 Score: 250 bits (638), Expect = 9.040e-73
Identity = 137/257 (53.31%), Postives = 174/257 (67.70%), Query Frame = 3
Query:  555 VDTVKALRRAGKRTFFVTNNASKSRRQYCLKLEGFGVDGVGVEDIVTSGSALAAYVKRAHPDVHTVYMVGSGGQEEELGLVGLKVVKEATRPPIGMTEDEFRVFEPDPEVGAVVVGLDTAFGFRQLCVASTYIQKGANFVGTNPDVADRVGSLLMPGTGPLLASIQSASGVAPVVVGKPNPLLLRQLMDLNGLDASSTIMVGDRLDTDVKFGNAAGVSSALVLTGVSEAADVVGLPAG-GESTPTYIMENLAFLLPA 1322
            V+T+ ALR AGKR  F+TNN+SKSRRQY  K   FGV  V   DIVTSGSA+A Y+K     +   Y++G  G  EEL L G+  +++A      M+E EF   E DP+V AV VG D +FGFRQ+ +AS Y+Q+G  F+G NPD ADRVG LL PGTGPLLA+IQSASG  PV++GKPNP+L++ ++   G+D + T MVGDRLDTD+ F NA G+SS LV+TGVS  AD+  L A      P ++M  LA L PA
Sbjct:   61 VETLDALRAAGKRVLFITNNSSKSRRQYAAKFAAFGVS-VDPNDIVTSGSAMANYLKME--GITYAYVIGEDGLIEELELAGVTCIRDAKGAGPLMSESEFMALELDPKVQAVCVGWDRSFGFRQMSIASAYLQQGVGFIGANPDNADRVGPLLFPGTGPLLAAIQSASGAVPVIIGKPNPILIKGILAQFGMDQARTAMVGDRLDTDMAFANAGGISSVLVMTGVSTDADLAALSAERAHMAPAFVMAALASLRPA 314          
BLAST of mRNA_H-elongata_contig15000.3348.1 vs. uniprot
Match: C1ECJ4_MICCC (Phosphoglycolate phosphatase (Fragment) n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1ECJ4_MICCC)

HSP 1 Score: 167 bits (423), Expect = 5.450e-43
Identity = 109/277 (39.35%), Postives = 159/277 (57.40%), Query Frame = 3
Query:  516 DCHIFDARLTLCQVDT--------VKALRRAGKRTFFVTNNASKSRRQYCLKLEGFGVDGVGVEDIVTSGSALAAYVKRAHPDVHTVYMVGSGGQEEELGLVGLKVVKEATRPPIGMTEDEFRVFEPDPEVGAVVVGLDTAFGFRQLCVASTYIQKGANFVGTNPDVADRVGSLLMPGTGPLLASIQSASGVAP-VVVGKPNPLLLRQLMDLNGLDASSTIMVGDRLDTDVKFGNAAGV-SSALVLTGVSEAADVVGLPAGGESTPTYIMENLAFLL 1316
            DC + D    L Q DT        ++ LR  GKR  FVTNN++KSRRQY  K E  G+  V  E++ ++  A AAY+K          ++G  G  +EL  + L+V        +  TE ++   + DP+ GAV+VG DT+F + +L  AS  IQ+GA FV TNPD  D +G  LMPG G ++A+++ ASGV+P +  GKP+  LL +L+  N +D + T++VGDRLDTD+ FG A G  ++ L L+GV    DV      G   P +I+++L  +L
Sbjct:    2 DCIVMDCDGVLWQGDTLLPGVRESIQLLREMGKRLVFVTNNSNKSRRQYVHKFEKLGIF-VEKEEVFSAAFAAAAYLK-TQKFAKKAMVIGGQGIVDELNEMYLEVDPGVFNA-VQCTEMDWEELDIDPDCGAVIVGQDTSFTYAKLAYASLAIQRGAVFVATNPDAGDAIGPGLMPGAGAIVAAVEKASGVSPEIYAGKPSAFLL-ELLKGNRVDMARTLVVGDRLDTDIAFGRAGGAGATVLTLSGVCGLEDVDAAMEEGGDIPNHIVQSLPHML 274          
BLAST of mRNA_H-elongata_contig15000.3348.1 vs. uniprot
Match: A0A5J4YYA0_PORPP (Phosphoglycolate phosphatase 2 n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YYA0_PORPP)

HSP 1 Score: 167 bits (423), Expect = 5.280e-42
Identity = 103/268 (38.43%), Postives = 147/268 (54.85%), Query Frame = 3
Query:  558 DTVKALRRAGKRTFFVTNNASKSRRQYCLKLEGFGVDGVGVEDIVTSGSALAAYVKRAHPDVHTVYMVGSGGQEEELGLVGLKVVKE-----------ATRPPIGMTEDEFRVFEPDPEVGAVVVGLDTAFGFRQLCVASTYIQKGANFVGTNPDVADRVGS-LLMPGTGPLLASIQSASG-VAPVVVGKPNPLLLRQLMDLNGLDASSTIMVGDRLDTDVKFGNAAGVSSALVLTGVSEAADVVGLPAGGESTPTYIMENLAFLLPA 1322
            D VK LR  G RT FVTNN   SRR Y  KL+  G+D    +DIVTSGSALA+YVK  H D+ T Y++G  G  EEL  VG++  +            A    +    DE +  +       V +G D  F   ++  AS ++QKGA F+ TN D  D+  S  LMPGTGP++ +++ A+G  A  V+GKP+ LL+  ++   G++ +  +MVGDRLDTD+ F    G+ S LVLTG +   ++  L       P ++  +LA  + A
Sbjct:   92 DAVKELRARGIRTIFVTNNVRFSRRGYAQKLKRNGID-ARPDDIVTSGSALASYVKSKHSDIKTAYVIGEPGLVEELESVGIRCFRHDASTEMDEALFANLSDMSKRTDEDKQMQLPERCDLVAIGWDLQFSMAKMSYASFFVQKGALFLATNLDAQDKSASGYLMPGTGPMVGALECATGRAADAVIGKPSALLIETILTEFGVERADAMMVGDRLDTDILFAKNGGIGSVLVLTGCTTEQELAELDPSDIRRPDHVFPSLAHYVAA 358          
BLAST of mRNA_H-elongata_contig15000.3348.1 vs. uniprot
Match: A0A388K1M7_CHABU (Phosphoglycolate phosphatase (PGPase)-like protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388K1M7_CHABU)

HSP 1 Score: 161 bits (407), Expect = 3.490e-40
Identity = 104/260 (40.00%), Postives = 154/260 (59.23%), Query Frame = 3
Query:  555 VDTVKALRRAGKRTFFVTNNASKSRRQYCLKLEGFGVDGVGVEDIVTSGSALAAYVKRAHPDVHTVYMVGSGGQEEELGLVGLKVVKEATRPPIGMT-EDEFRVFEPDPEVGAVVVGLDTAFGFRQLCVASTYIQKGAN--FVGTNPDVADRVGS-LLMPGTGPLLASIQSASGVAPVVVGKPNPLLLRQLMDLNGLDASSTIMVGDRLDTDVKFGNAAGVSSALVLTGVSEAADVVGLPAGGEST--PTYIMENLAFLL 1316
            ++T+  LR  GKR FFVTNNA+KSR+ Y  K +  G+  +  E+I T+G A AAY+K       T +++G+ G EEEL L G+K +     P  G   ED       DPEVGAV+V LD    + ++  A++++++  N  FVGTNPD      S +++PG G LLA++++ +G    VVGKP PL+L  ++  + LD   T MVGD L TD+ FG   G++S LV++GV+  AD     A  ES   P +++E+ A +L
Sbjct:   53 IETLSFLRSQGKRLFFVTNNATKSRKDYLKKFQRLGIYALP-EEIYTAGYAAAAYLKSLGFK-KTAFVIGASGLEEELTLAGIKWIGGTEYPIAGPALEDVASSINCDPEVGAVIVSLDWRCTYEKIAQAASFLRRDKNCVFVGTNPDPKLNTASGVVLPGAGSLLAAVETTTGRKASVVGKPEPLMLDLMVAEHRLDRRRTGMVGDALTTDIPFGKRGGLTSILVMSGVTTRADFEAHRASKESGVHPDFVLESAADIL 310          
BLAST of mRNA_H-elongata_contig15000.3348.1 vs. uniprot
Match: A0A7S0ANX3_9DINO (Hypothetical protein n=1 Tax=Pyrodinium bahamense TaxID=73915 RepID=A0A7S0ANX3_9DINO)

HSP 1 Score: 161 bits (408), Expect = 3.780e-40
Identity = 106/257 (41.25%), Postives = 149/257 (57.98%), Query Frame = 3
Query:  558 DTVKALRRAGKRTFFVTNNASKSRRQYCLKLEGFGVDGVGVEDIVTSGSALAAYVKRAH---PDVHTVYMVGSGGQEEELGLVGLKVVKEATRPPIGMTEDEFRVFEPD-PEVGAVVVGLDTAFGFRQLCVASTYIQKGAN---FVGTNPDVADR-VGSLLMPGTGPLLASIQSASGVAPVVVGKPNPLLLRQLMDLNGLDASSTIMVGDRLDTDVKFGNAAGVSSALVLTGVSEAADVVGLPAGGESTPTYIMENL 1304
            D V+ L+R+GKR  FVTN ++++R     ++       V   D+VTSGS  AA V  AH         +++G+ G  EEL L G+ VV+ +   P+   E  FR      P V AVVVG D AF +  L  AS ++Q+G      +GTNPDVA+R     L+P  G L+A++++AS    +VVGKP+P ++RQL++ +GL A   ++VGDRLDTDV+FG  AG  + LVLTGVS   +   LP      PTYI + L
Sbjct:   91 DAVRRLQRSGKRLAFVTNASARTRAAVAKRISSLLGTPVPASDVVTSGSVAAAAVA-AHGGGAGAANAFVIGAEGLREELRLAGVFVVEPSL--PMPFDEVAFRSLASTLPPVTAVVVGHDEAFSYATLAAASLFLQRGGEECLLIGTNPDVANRDTAGYLVPEAGSLIAAVEAASSRNAIVVGKPSPEVIRQLLERHGLKAEEVLVVGDRLDTDVRFGAGAGARTCLVLTGVSTREEAEALPFSDR--PTYIRDRL 342          
BLAST of mRNA_H-elongata_contig15000.3348.1 vs. uniprot
Match: A0A7S0CUU7_MICPS (Hypothetical protein n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0CUU7_MICPS)

HSP 1 Score: 160 bits (406), Expect = 7.560e-40
Identity = 112/284 (39.44%), Postives = 160/284 (56.34%), Query Frame = 3
Query:  516 DCHIFDARLTLCQVDT--------VKALRRAGKRTFFVTNNASKSRRQYCLKLEGFGVDGVGVEDIVTSGSALAAYVKRAHPDVHTVYMVGSGGQEEELGLVGLKVVKEATRPPIGMTEDEFRVFEPDPEVGAVVVGLDTAFGFRQLCVASTYIQKGANFVGTNPDVADRVGSLLMPGTGPLLASIQSASGVAP-VVVGKPNPLLLRQLMDLNGLDASSTIMVGDRLDTDVKFGNAAGVS-SALVLTGVSEAADV---VGLPAGGES----TPTYIMENLAFLL 1316
            DC + D    + Q DT        +  LR  GKR  FVTNN++KSR+QY  K E  G+  V  E+I ++  A AAY+K         ++VG  G  +EL  + ++V        +  TE ++     D +VGAV+VG D AF + +L  AS  IQ+GA FV TNPD AD +G  +MPG G ++A++++ASGV+P +  GKP+  LL +L+  N +D S T++VGDRLDTDV FG A G   + L L+GVS   DV   +     GE      P +I++ L  +L
Sbjct:   21 DCIVMDCDGVIWQGDTLLPGARESIALLREQGKRLVFVTNNSNKSRKQYVYKFEQLGI-AVEKEEIFSAAFAAAAYLK-TRKFAKKAFVVGGRGIVDELNDMQIEVDPGVFNA-VQCTETDWEDMFLDDDVGAVIVGQDVAFTYAKLAYASLAIQRGAAFVATNPDAADALGPGMMPGAGAIVAAVETASGVSPEMYAGKPSAFLL-ELLKGNHVDMSRTLVVGDRLDTDVAFGKAGGAGVTVLTLSGVSTLDDVDEAIEAQRAGEEDAPPVPDFIVQGLPQML 300          
BLAST of mRNA_H-elongata_contig15000.3348.1 vs. uniprot
Match: A0A2R5G460_9STRA (Glycerol-3-phosphate phosphatase n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5G460_9STRA)

HSP 1 Score: 155 bits (392), Expect = 1.220e-38
Identity = 102/258 (39.53%), Postives = 138/258 (53.49%), Query Frame = 3
Query:  555 VDTVKALRRAGKRTFFVTNNASKSRRQYCLKLEGFGVDGVGVEDIVTSGSALAAYVKRAHPDVHTVYMVGSGGQEEELGLVGLKVVKEATRPPIGMTEDEFRVFEPDPEVGAVVVGLDTAFGFRQLCVASTYIQKGANFVGTNPDVADRVGSLLMPGTG----PLLASIQSASGVAPVVVGKPNPLLLRQLMDLNGLDASSTIMVGDRLDTDVKFGNAAGVSSALVLTGVSEAADVVGLPAGGESTPTYIMENLAFLL 1316
            V+ V  +R AGKR  FVTNN++KSR+ Y  K E    +GV VE I TSGSA A   K        V+ +G  G  EE   VG++ V+ ++    GM E EF   + +  V AVVVG D  F FR+LC+AS YIQ GA  + T  D +D+VG   MPG G     +  S+    G    V GKPN  L+  +++      S T+MVGDRLDTD+KF       S LVL+G +    +    +  +  PT++  +LA  L
Sbjct:   32 VEAVSRMRAAGKRVVFVTNNSTKSRQAYLDKFEALKFEGVEVEHINTSGSAAAELCKLGGHK--KVFAIGEPGLMEEFKAVGVETVEVSSDAKTGMDEAEFENAKLEEGVSAVVVGWDRNFSFRKLCLASLYIQAGAKLIATGLDPSDKVGGKSMPGNGCNVNAIQYSVDDPQGEHTTVAGKPNSHLMENILNKYNFTGSETLMVGDRLDTDIKFAEGQ-AKSLLVLSGCTP---IEEYESRTDVKPTHVAADLATAL 283          
BLAST of mRNA_H-elongata_contig15000.3348.1 vs. uniprot
Match: A0A2H5WQ68_9BACT (Acid sugar phosphatase n=2 Tax=Bacteria TaxID=2 RepID=A0A2H5WQ68_9BACT)

HSP 1 Score: 154 bits (388), Expect = 3.930e-38
Identity = 95/255 (37.25%), Postives = 144/255 (56.47%), Query Frame = 3
Query:  555 VDTVKALRRAGKRTFFVTNNASKSRRQYCLKLEGFGVDGVGVEDIVTSGSALAAYVKRAHPDVHTVYMVGSGGQEEELGLVGLKVVKEATRPPIGMTEDEFRVFEPDPEV-GAVVVGLDTAFGFRQLCVASTYIQKGANFVGTNPDVADRVGSLLMPGTGPLLASIQSASGVAPVVVGKPNPLLLRQLMDLNGLDASSTIMVGDRLDTDVKFGNAAGVSSALVLTGVSEAADVVGLPAGGESTPTYIMENLAFLL 1316
            V T+  LR AG++ FF+TNN+  +R QY  KL   G+     E ++TSG A A Y+K+A P+   +++VG  G +EEL   G  +++                  PD  +  AVVVG+D +F + +L  A   I +GA F+ TN D        L+PG G ++A+I +A+G  P+++GKPNP +L  L+    +   +T++VGDRLDTD+   N   + SALVLTGV++  DV   P   E  PT+++ +L  LL
Sbjct:   38 VTTLNLLREAGRQIFFLTNNSGATREQYAHKLTAMGIP-TTPEQVITSGWATALYLKKALPNAK-LFVVGEPGLKEELASHGFPLIE-----------------NPDETLPDAVVVGIDRSFDYTRLAQAQYAILEGARFIATNADPTYPAEHRLLPGAGAIVAAIATATGRKPILIGKPNPEILAPLIQAQRIHPQTTLLVGDRLDTDIALANHLHIPSALVLTGVTQRNDVECAPL--ELLPTWVLNHLGELL 271          
BLAST of mRNA_H-elongata_contig15000.3348.1 vs. uniprot
Match: A0A1X6MPQ1_9APHY (4-nitrophenylphosphatase n=2 Tax=Postia placenta TaxID=104341 RepID=A0A1X6MPQ1_9APHY)

HSP 1 Score: 154 bits (388), Expect = 5.790e-38
Identity = 100/278 (35.97%), Postives = 149/278 (53.60%), Query Frame = 3
Query:  516 DCHIFDARLTLCQVD--------TVKALRRAGKRTFFVTNNASKSRRQYCLKLEGFGVDGVGVEDIVTSGSALAAYVKRAH--PDVHTVYMVGSGGQEEELGLVGLKVVKEATRPPIGMTEDEFRVFEPDPEVGAVVVGLDTAFGFRQLCVASTYIQKGAN--FVGTNPDVADRVGSLLMPGTGPLLASIQSASGVAPVVVGKPNPLLLRQLMDLNGLDASSTIMVGDRLDTDVKFGNAAGVSSALVLTGVSEAADVVGLPAGGESTPTYIMENLAFL 1313
            D  +FD    L Q D         +  LRR+GK+ FFVTNNA+KSR+ Y  K +  GV+   V+++  S  A A Y+      P    VY++G  G EEEL   G+  +         + E   + F PDP VGAV+ GLDT+  + +L  A TY+++ A+  F+ TN D        L+PG G + A +  A G  P+ +GKP   +L  +      D + TIMVGDRL+TD++FG   G+++ LVLTG+++ ++VVG P    + P Y   ++  L
Sbjct:   19 DTWLFDCDGVLWQGDRLIEGVPEVLSLLRRSGKKIFFVTNNATKSRKNYKKKFDQLGVE-AQVDEVFGSAYASAVYISSVMKLPKDKKVYVIGMKGLEEELDEEGIAHIGGTDPADNTLAEFHLKHFTPDPAVGAVLCGLDTSINYTKLSKAFTYLRRNADCVFLATNTDSTYPSAEGLLPGAGSISAPLACALGRQPLSIGKPAATMLDCIKAKYQFDPTRTIMVGDRLNTDIEFGKRGGLATLLVLTGITQESEVVG-PEASSTVPDYFTNSIGDL 294          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig15000.3348.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G934_ECTSI8.750e-13380.46Haloacid dehalogenase-like hydrolase family protei... [more]
A0A836CPG6_9STRA9.040e-7353.31Haloacid dehalogenase-like hydrolase family protei... [more]
C1ECJ4_MICCC5.450e-4339.35Phosphoglycolate phosphatase (Fragment) n=1 Tax=Mi... [more]
A0A5J4YYA0_PORPP5.280e-4238.43Phosphoglycolate phosphatase 2 n=1 Tax=Porphyridiu... [more]
A0A388K1M7_CHABU3.490e-4040.00Phosphoglycolate phosphatase (PGPase)-like protein... [more]
A0A7S0ANX3_9DINO3.780e-4041.25Hypothetical protein n=1 Tax=Pyrodinium bahamense ... [more]
A0A7S0CUU7_MICPS7.560e-4039.44Hypothetical protein n=1 Tax=Micromonas pusilla Ta... [more]
A0A2R5G460_9STRA1.220e-3839.53Glycerol-3-phosphate phosphatase n=1 Tax=Hondaea f... [more]
A0A2H5WQ68_9BACT3.930e-3837.25Acid sugar phosphatase n=2 Tax=Bacteria TaxID=2 Re... [more]
A0A1X6MPQ1_9APHY5.790e-3835.974-nitrophenylphosphatase n=2 Tax=Postia placenta T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig15000contigH-elongata_contig15000:1361..5678 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score293.1
Seed ortholog evalue1e-76
Seed eggNOG ortholog2880.D7G934
KEGG rclassRC00017,RC00151
KEGG koko:K01101,ko:K19269
KEGG ReactionR01334,R03024
KEGG Pathwayko00627,ko00630,ko01100,ko01110,ko01120,ko01130,ko01200,map00627,map00630,map01100,map01110,map01120,map01130,map01200
KEGG ModuleM00532
EggNOG free text desc.phosphoglycolate phosphatase activity
EggNOG OGsCOG0647@1,KOG2882@2759
EC3.1.3.18,3.1.3.41,3.1.3.48
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01009
Hectar predicted targeting categoryother localisation
Exons4
Model size2426
Cds size627
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig15000.3348.1prot_H-elongata_contig15000.3348.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig15000 2405..4394 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929888.3553538-UTR-H-elongata_contig15000:1360..24041622929888.3553538-UTR-H-elongata_contig15000:1360..2404Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig15000 1361..2404 -
1691679196.1473532-UTR-H-elongata_contig15000:1360..24041691679196.1473532-UTR-H-elongata_contig15000:1360..2404Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig15000 1361..2404 -
1622929888.4794753-UTR-H-elongata_contig15000:4394..44351622929888.4794753-UTR-H-elongata_contig15000:4394..4435Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig15000 4395..4435 -
1691679196.185726-UTR-H-elongata_contig15000:4394..44351691679196.185726-UTR-H-elongata_contig15000:4394..4435Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig15000 4395..4435 -
1622929888.490822-UTR-H-elongata_contig15000:4964..56781622929888.490822-UTR-H-elongata_contig15000:4964..5678Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig15000 4965..5678 -
1691679196.1929665-UTR-H-elongata_contig15000:4964..56781691679196.1929665-UTR-H-elongata_contig15000:4964..5678Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig15000 4965..5678 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929888.3732214-CDS-H-elongata_contig15000:2404..27221622929888.3732214-CDS-H-elongata_contig15000:2404..2722Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15000 2405..2722 -
1691679196.1583107-CDS-H-elongata_contig15000:2404..27221691679196.1583107-CDS-H-elongata_contig15000:2404..2722Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15000 2405..2722 -
1622929888.3859632-CDS-H-elongata_contig15000:3373..35561622929888.3859632-CDS-H-elongata_contig15000:3373..3556Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15000 3374..3556 -
1691679196.1702318-CDS-H-elongata_contig15000:3373..35561691679196.1702318-CDS-H-elongata_contig15000:3373..3556Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15000 3374..3556 -
1622929888.3994093-CDS-H-elongata_contig15000:4268..43941622929888.3994093-CDS-H-elongata_contig15000:4268..4394Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15000 4269..4394 -
1691679196.1780925-CDS-H-elongata_contig15000:4268..43941691679196.1780925-CDS-H-elongata_contig15000:4268..4394Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15000 4269..4394 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig15000.3348.1

>prot_H-elongata_contig15000.3348.1 ID=prot_H-elongata_contig15000.3348.1|Name=mRNA_H-elongata_contig15000.3348.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=209bp
MVGSGGQEEELGLVGLKVVKEATRPPIGMTEDEFRVFEPDPEVGAVVVGL
DTAFGFRQLCVASTYIQKGANFVGTNPDVADRVGSLLMPGTGPLLASIQS
ASGVAPVVVGKPNPLLLRQLMDLNGLDASSTIMVGDRLDTDVKFGNAAGV
SSALVLTGVSEAADVVGLPAGGESTPTYIMENLAFLLPAAEAAAGTKAAR
NGGNDASP*
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mRNA from alignment at H-elongata_contig15000:1361..5678-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig15000.3348.1 ID=mRNA_H-elongata_contig15000.3348.1|Name=mRNA_H-elongata_contig15000.3348.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=4318bp|location=Sequence derived from alignment at H-elongata_contig15000:1361..5678- (Himanthalia elongata Himel1 dioecious)
TACCACTGATTATTACGGTATTACCACTGATTATTACGGTATTGCCACTG ATTATTACGGTATTACCGCTGATTATTACGGTATTACTACTAATTATTAC GTTATTACCACTGATTATTACGGTATTGCCACTGATTATTACGGTATTAC CGCTGATTATTACGGTATTACTACTGATTATTACGGTATTACCACTGATT ATTACGGTATTACCACTGATTATTACGTTATTACCACTGATTATTATGGT ATTACCACTGATTATTATGGTATTACCACTGATTATAGCGGTATTACGGT ATTACCACATGCTCCATGCAAAGAAAAGGTGTAGCTCGGTCCTACGATCT CTTGAAACTAGAGGCGCTACTGGCTCAGCAGGTCAGGTGATGAGTTATAA AGCTTTTTCAAGAATATTTTCAAACGAGATGCGTGGCTAGTTCTGGTTCT GTCGTACAGGAGATCGCACGACATCTCCAGCGCGCATCCGACCACCGCCA CTGACGTTCTGACGCGATTGCCACATTTTTGATGCGCGACTGACGTTATG TCAAGTTGACACGGTCAAGGCGCTGAGGCGTGCCGGCAAGCGCACTTTCT TCGTCACGAACAACGCAAGCAAGAGTCGGAGGCAGTACTGCCTCAAGCTG GAAGGCTTCGGAGTCGACGGAGTGGGCGTCGAAGACATCGTTACCTCGGG CTCGGCGCTTGCGGGTTAGAGTCACCTATCCCCTCCCCCCCCTCCGCTCT TGTAGAATATTTTTATTGCGATATAGTATAAATATGTACGAATATGTAGA TAATATGTATCTATTTATGTCTAAATTACCCGGGCGTAATATTTTGGCAA TGAGGCGGTGAGGAGGCGGGTGATTAATCCCTTCTTGTCGATAAAAAAAT ATAGACATGAATGGGGCCATGTCACGACGTCCGTTGAAAAATGCAGCTAT ACCTCCGTGCCAAGTGTACACAGGAGATTCATATGGTACGGCACTGCTGC GGGTCGAGCGACACCACTTTTCACAGAAGTAACGGTTCGACGGCCTAGTA CCCACATAGATTCTAGTGCATCGCGTCCCTTTGGGCCTTTTTGGTTTGTC CCTTTGTCCCTTCGTCCGTTGAAGCGAAGCGCCAATGGAGCGGATCTCGT AACTTTGTCAGGCGCACGTTCGAAGTTACTAGCATTCTCCATCCACCCCT TATTGTATCAACACCTCTCAATACGACACCTCTTGCATCGCAGCGTATGT CAAACGCGCCCACCCTGACGTCCATACGGTATACATGGTGGGGAGTGGCG GACAGGAAGAGGAGCTGGGGTTGGTGGGGTTGAAAGTGGTAAAGGAAGCC ACGCGTCCGCCCATCGGCATGACGGAGGATGAATTCCGCGTATTCGAGCC GGACCCGGAGGTACGTGTTTCCGTGCGTTCGTGACCTACAGTGGCGCGCA AGTTATTCATGCCTTGGCCCGCGGTAAAGCTCGCAATCTGTTTGCCCAGT ATAACGGACGGCATAAACGTTATCATGCTGGTGGGGGTGGTTTCTCCATG TTCCTGGATAGACGGCTGCACCAAGATTCGTGGCCGTAGCGTATCAAGCC AGACTCCGCCTGATTATTCACGGCAACGGCATGAATACAATGGATCCAAA AAGGGACCACGGGGTTAGAAGGGGGAAGGGGGTGCGCCATAGTGATCTTT CCGCCTGAAACTCACGATGTCGCGTCGATCGTTCCAAATTATATAAAACC GGAGGATTGAGAGGATCCCGCGAGTAAGCTCCAGATTCAGCCTGGGTTGA TAGAATGAGCAGGCTGACGCGGGACGAGAAGGCTGAACCCGTCTCGCGAG ACCAAAATCTCGGGCGTGAACGGGGACAGGGAATTTTTTTTCCCCTGTTC AGCTGGCCACGAGCAAAAGGAAACCAAATCCGGTGGATCCTTCTGCTAAA TGTGCAACCATGCATAGGACGCGACGGGCGGGTATGGCGACAACCGTGCT TCCATCAGTAGATTGCTCTTTAAAAATATACTACCGGCGGAATAGGTTTT CCGTGAGATATTTGCTTTGCGCTTTCACGACGTGTGCGGCTCGTGTTTTG TATTTCGTGTCTGGTGTCTCAGGTCGGCGCTGTCGTTGTGGGACTGGACA CCGCTTTCGGGTTCCGTCAGCTTTGCGTGGCCTCCACATACATCCAGAAG GGCGCGAATTTTGTGGGCACCAATCCCGACGTTGCTGACCGCGTCGGCAG CCTCTTGATGCCCGGGACGGGCCCTCTGTTAGCCAGCATTCAAAGCGCCT CAGGGGTGAGAACCGGTTTAACGAAGTCGACGGGACTGTGAAATAGGACA GCTCCAGTATCCAGGTTATAATCACGCGTACGACCAGCGACCGCCCTGCC CGGACGGAACATGTTGAGAGCCACCTTCCTCCGTCGATTCGTAACTGAAG AACAGTATTGTAGCACACACTAGTACCGCAATACGTAGCGACGCTGTGTA CTGCAGTGTTCGGGGAGGGAAACATCTCCGCAAGACAAAGGGTACTCTGA GGGGAATGAGGGCACCGGCGCCGAAAAGCAAAACGCATTTTTGGAGATAT GCAGATCTCTACAGCGCCCCACTATGTGCTCATCACACAGAGCAGAGTAA GATCAATATGGCTCGAAGAACTTGGTAGGAATAGCAACACCCTCGTGCAC CAGCTACTGTAACTGTCAATGGCTTGTGTATGCCGCGTATCTCTATAGAA AACCAGGGTAAGGGAAGGAAGTGGAGAGCTTCTTGCGGTGTTGAAAACGT GCGAGCCTAACTCATCTCGTTTTCCTTTAAATTTCTGCGCCAAAGGATAT TGCGCCGCTACGGCTCAGCGGAAGAACATCGCGCATTCTGTGGCAATTAC AAGCGGTTTTTTTTTTTACACTGAAGTTCCCGGGAATATCACGTTTTCCC CAGCAGGTGGCGCCTGTTGTGGTTGGAAAACCCAACCCCTTGCTACTCCG CCAGCTGATGGACCTTAATGGCTTAGACGCTTCAAGCACGATCATGGTGG GAGACAGGCTCGATACGGACGTCAAGTTTGGGAACGCCGCAGGCGTGTCC AGCGCTCTGGTGCTGACCGGAGTCAGTGAAGCGGCAGATGTCGTCGGCTT GCCAGCCGGCGGAGAAAGCACGCCGACCTATATAATGGAAAACCTAGCGT TCTTGCTCCCCGCGGCTGAAGCAGCGGCTGGGACGAAAGCTGCAAGGAAT GGCGGGAATGATGCTTCGCCATGAAAAGGGGGATGGTCAAGAAGAGAGCG ATCATGTCGATCGAGCAACAACTCAAGCGGCAACCACGCAGGCACCAAGA TTCGAAAAGACCAGCGTCAACTCGTGATATTCCGCGTAGAATGCTCTTAT TAATAGTAGATCGTTGCTCGTCGATTGAACCGATTGGACCCACTGGACCG AAACGTACCGACGGCGTGTATCTTCTGCCCGGGGACGCACGGGACACGCG TGTGCCGCGACTGCGCAGTTCAGCACCCAGGGGTCGTCATCGGCCCCTCT TACAGCAGGCTACCAAGCTGGACAAGATACAGGGAGTACGGCTAGGCGAA ATCAACCCTTCTTCAGAGGCTGGCGACACAAAGTGCCGCGAGGCGTTTTA CTGATATTATAAATTTCCTGGGTGGATGTTCGGTAGGAGAGGAGCTCCGC GCCCTTGTGGCAACCTACACGGTCCCGAGTATTGCGTGTTGCTTAGCATT TCGCCCTGGTGAACCATATTTCGTCCTACGTTATCCTAAGTAATCAGTAA TCCGCTAAAAATGGGCTATATGCAACAGTGGTAGGTGCTTTTATTTGCCT CAGTTTGGGATGTCAAACTATGATTTTGATAGTTCACGCAACAGTGCGAT ATTTAACCCCTGGGCGAGCCTTTGTCGTGCATGGCGCATAAGAGTAGCCG TCCTCACCTACTTGGCGCAAGCTCGTTGGGCAGTGGACACTGAATGTAGG GGTGTGGAGAGGCGTTATCGACGGGGGCGAGGGGGTGTACTCAAGTATTA TACGCCTTAGCTGTTCAATGTTTTTACCACGGGTCTTCATGAGGACGGAC GGAGCAGGGGGGTGGTTTCATGCCTTGTTGGGTGATGTGACGGCTGTCTT TTTCTTTTAAAACATGAACTCATATAAACCCTACGAAAACCCGGCACCTT CCTCATACTGTCGTCGGTGGAAACCCGTTCGAAACGGATGTGTGCATAAA CCGTCAACATTTCGGTTGACGACGTTTGGCGGATTGACTGTCTTTGATTG GTAGACAGTTTGTGGTGG
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Coding sequence (CDS) from alignment at H-elongata_contig15000:1361..5678-

>mRNA_H-elongata_contig15000.3348.1 ID=mRNA_H-elongata_contig15000.3348.1|Name=mRNA_H-elongata_contig15000.3348.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1254bp|location=Sequence derived from alignment at H-elongata_contig15000:1361..5678- (Himanthalia elongata Himel1 dioecious)
ATGGTGGGGAGTGGCGGACAGGAAGAGGAGCTGGGGTTGGTGGGGTTGAA
AGTGGTAAAGGAAGCCACGCGTCCGCCCATCGGCATGACGGAGGATGAAT
TCCGCGTATTCGAGCCGGACCCGGAGATGGTGGGGAGTGGCGGACAGGAA
GAGGAGCTGGGGTTGGTGGGGTTGAAAGTGGTAAAGGAAGCCACGCGTCC
GCCCATCGGCATGACGGAGGATGAATTCCGCGTATTCGAGCCGGACCCGG
AGGTCGGCGCTGTCGTTGTGGGACTGGACACCGCTTTCGGGTTCCGTCAG
CTTTGCGTGGCCTCCACATACATCCAGAAGGGCGCGAATTTTGTGGGCAC
CAATCCCGACGTTGCTGACCGCGTCGGCAGCCTCTTGATGCCCGGGACGG
GCCCTCTGTTAGCCAGCATTCAAAGCGCCTCAGGGGTCGGCGCTGTCGTT
GTGGGACTGGACACCGCTTTCGGGTTCCGTCAGCTTTGCGTGGCCTCCAC
ATACATCCAGAAGGGCGCGAATTTTGTGGGCACCAATCCCGACGTTGCTG
ACCGCGTCGGCAGCCTCTTGATGCCCGGGACGGGCCCTCTGTTAGCCAGC
ATTCAAAGCGCCTCAGGGGTGGCGCCTGTTGTGGTTGGAAAACCCAACCC
CTTGCTACTCCGCCAGCTGATGGACCTTAATGGCTTAGACGCTTCAAGCA
CGATCATGGTGGGAGACAGGCTCGATACGGACGTCAAGTTTGGGAACGCC
GCAGGCGTGTCCAGCGCTCTGGTGCTGACCGGAGTCAGTGAAGCGGCAGA
TGTCGTCGGCTTGCCAGCCGGCGGAGAAAGCACGCCGACCTATATAATGG
AAAACCTAGCGTTCTTGCTCCCCGCGGCTGAAGCAGCGGCTGGGACGAAA
GCTGCAAGGAATGGCGGGAATGATGCTTCGCCATGAGTGGCGCCTGTTGT
GGTTGGAAAACCCAACCCCTTGCTACTCCGCCAGCTGATGGACCTTAATG
GCTTAGACGCTTCAAGCACGATCATGGTGGGAGACAGGCTCGATACGGAC
GTCAAGTTTGGGAACGCCGCAGGCGTGTCCAGCGCTCTGGTGCTGACCGG
AGTCAGTGAAGCGGCAGATGTCGTCGGCTTGCCAGCCGGCGGAGAAAGCA
CGCCGACCTATATAATGGAAAACCTAGCGTTCTTGCTCCCCGCGGCTGAA
GCAGCGGCTGGGACGAAAGCTGCAAGGAATGGCGGGAATGATGCTTCGCC
ATGA
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