mRNA_H-elongata_contig149940.3344.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig149940.3344.1
Unique NamemRNA_H-elongata_contig149940.3344.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig149940.3344.1 vs. uniprot
Match: D8LIV0_ECTSI (Peptidase A1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIV0_ECTSI)

HSP 1 Score: 127 bits (318), Expect = 3.690e-32
Identity = 62/116 (53.45%), Postives = 80/116 (68.97%), Query Frame = 1 
Query:    1 SYNNNKSFFAPAAASNEDWGDLVWGERHTAKYPSAWGFPAFDLSVCGRGLFGNITSSWPAILSTGSACLGLPQEMFDNLMAWLPC-GTLEKSVAHWVCYIDQDTIASAGLPWLSFR 345
            SYN+       + +S++  GD+ WG+R TA +PS+WGFPAFDL+VCGR L GNIT+ WPA++STGSACLGLPQE FD+LM+WLP  G         +C I  +  A+  LP LSFR
Sbjct:  157 SYNSTLEIGGYSGSSSDTVGDVQWGQRLTAAFPSSWGFPAFDLAVCGRSLMGNITTFWPAVVSTGSACLGLPQEFFDSLMSWLPVEGDCPDPENGGICSISAEN-AAMELPSLSFR 271
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BLAST of mRNA_H-elongata_contig149940.3344.1 vs. uniprot
Match: A0A6H5KZM9_9PHAE (Peptidase A1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZM9_9PHAE)

HSP 1 Score: 121 bits (304), Expect = 9.690e-30
Identity = 60/116 (51.72%), Postives = 78/116 (67.24%), Query Frame = 1 
Query:    1 SYNNNKSFFAPAAASNEDWGDLVWGERHTAKYPSAWGFPAFDLSVCGRGLFGNITSSWPAILSTGSACLGLPQEMFDNLMAWLPC-GTLEKSVAHWVCYIDQDTIASAGLPWLSFR 345
            SYN+       + +S++  GD+ WG+R TA +PS+WGFPAFDL+VCGR L  NIT+ WPA++STGSACLGLP E FD+LM+WLP  G         +C I  +  A+  LP LSFR
Sbjct:  463 SYNSTLEIGGYSGSSSDTVGDVQWGQRLTAAFPSSWGFPAFDLAVCGRSLMSNITAFWPAVVSTGSACLGLPHEFFDSLMSWLPVEGHCPDPENGGMCSISAEN-AAMELPSLSFR 577
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BLAST of mRNA_H-elongata_contig149940.3344.1 vs. uniprot
Match: A0A482SPF7_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SPF7_9ARCH)

HSP 1 Score: 62.8 bits (151), Expect = 4.020e-9
Identity = 29/79 (36.71%), Postives = 42/79 (53.16%), Query Frame = 1 
Query:   37 AASNEDWGDLVWGERHTAKYPSAWGFPAFDLSVCGRGLFGNITSSWPAILSTGSACLGLPQEMFDNLMAWLPCGTLEKS 273
            A   E++ D +     + KYP        +LS+CG  L GN +S+W  ++ TGS CL LP E++DN  AW    T+  S
Sbjct:  125 AGVKEEYVDTLQWYTSSTKYPPFHQVMISELSICGAPLLGNYSSTWEVLVDTGSVCLTLPAEIYDNFAAWFKNSTVVNS 203
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BLAST of mRNA_H-elongata_contig149940.3344.1 vs. uniprot
Match: A0A6G0XQB3_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XQB3_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 3.410e-8
Identity = 33/100 (33.00%), Postives = 51/100 (51.00%), Query Frame = 1 
Query:   58 GDLVWGERHTAK----YPSAWGFPAFDLSVCGRGLFGNITSSWPAILSTGSACLGLPQEMFDNLMAWLPCGTLEKSVAHWVCYIDQDTIASAGLPWLSFR 345
            G +VW E   A     Y     FP + LS CG+ L    ++ W A++   SACL LP+E ++ L+AW P   L  + +  +  +D   +A A +P L F+
Sbjct:  105 GSIVWSEPMLALEDFYYQRYTNFPMYQLSACGQSLTDTTSAYWNAVIDFHSACLTLPREFYNTLLAWTP---LSFNASSNLTVVDAGVVA-ADIPTLHFK 200
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig149940.3344.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LIV0_ECTSI3.690e-3253.45Peptidase A1 domain-containing protein n=1 Tax=Ect... [more]
A0A6H5KZM9_9PHAE9.690e-3051.72Peptidase A1 domain-containing protein n=1 Tax=Ect... [more]
A0A482SPF7_9ARCH4.020e-936.71Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A6G0XQB3_9STRA3.410e-833.00Uncharacterized protein n=2 Tax=Aphanomyces euteic... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig149940contigH-elongata_contig149940:334..887 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score129.8
Seed ortholog evalue8.2e-28
Seed eggNOG ortholog2880.D8LIV0
EggNOG OGs2DZGB@1,2S70F@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionAspartic peptidase domain
Ec32 orthologEc-20_001630.1
Exons2
Model size345
Cds size345
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929887.77848-CDS-H-elongata_contig149940:333..4561622929887.77848-CDS-H-elongata_contig149940:333..456Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig149940 334..456 -
1691679196.0164826-CDS-H-elongata_contig149940:333..4561691679196.0164826-CDS-H-elongata_contig149940:333..456Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig149940 334..456 -
1622929887.7903063-CDS-H-elongata_contig149940:665..8871622929887.7903063-CDS-H-elongata_contig149940:665..887Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig149940 666..887 -
1691679196.0304396-CDS-H-elongata_contig149940:665..8871691679196.0304396-CDS-H-elongata_contig149940:665..887Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig149940 666..887 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig149940.3344.1prot_H-elongata_contig149940.3344.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig149940 334..887 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig149940.3344.1

>prot_H-elongata_contig149940.3344.1 ID=prot_H-elongata_contig149940.3344.1|Name=mRNA_H-elongata_contig149940.3344.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=115bp
SYNNNKSFFAPAAASNEDWGDLVWGERHTAKYPSAWGFPAFDLSVCGRGL
FGNITSSWPAILSTGSACLGLPQEMFDNLMAWLPCGTLEKSVAHWVCYID
QDTIASAGLPWLSFR
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mRNA from alignment at H-elongata_contig149940:334..887-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig149940.3344.1 ID=mRNA_H-elongata_contig149940.3344.1|Name=mRNA_H-elongata_contig149940.3344.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=554bp|location=Sequence derived from alignment at H-elongata_contig149940:334..887- (Himanthalia elongata Himel1 dioecious)
TCTTATAATAACAATAAATCGTTTTTTGCCCCCGCAGCGGCGTCGAACGA
GGACTGGGGCGACCTGGTCTGGGGCGAGAGGCACACGGCGAAGTACCCTA
GCGCTTGGGGTTTCCCAGCATTCGACCTCAGCGTGTGCGGTCGGGGGCTC
TTCGGCAACATCACGTCGTCCTGGCCCGCCATCCTATCCACCGGATCGGC
TTGTCTTGGATTGCCTCAGGAGGTGCGATCGTAAGGTGTCTTACCCTAGC
CGCATGTGGCTTGAGAGGCGTGTGGCTTGCGGGGGGGGGGTTCGGTGGTG
TACTGTGCCCTATCCGTGAGCGTTGCGCGTTGCCTTTATGAACCGGGCGT
GATGTGCCGCCCCTACAATATCAAAAACATTTTTATTTTATTTTATGGAC
ATTACCCTATAACCCCTGATCCCTAACTCAGATGTTCGACAATCTCATGG
CCTGGCTGCCTTGCGGTACGCTGGAGAAAAGCGTCGCCCACTGGGTGTGC
TACATCGACCAAGACACGATTGCGTCTGCTGGGCTTCCGTGGCTATCTTT
CAGG
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Coding sequence (CDS) from alignment at H-elongata_contig149940:334..887-

>mRNA_H-elongata_contig149940.3344.1 ID=mRNA_H-elongata_contig149940.3344.1|Name=mRNA_H-elongata_contig149940.3344.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=690bp|location=Sequence derived from alignment at H-elongata_contig149940:334..887- (Himanthalia elongata Himel1 dioecious)
TCTTATAATAACAATAAATCGTTTTTTGCCCCCGCAGCGGCGTCGAACGA
GGACTGGGGCGACCTGGTCTGGGGCGAGAGGCACACGGCGAAGTACCCTA
GCGCTTGGGGTTTCCCAGCATTCGACCTCAGCGTGTGCGGTCGGGGGCTC
TTCGGCAACATCACGTCGTCCTGGCCCGCCATCCTATCCACCGGATCGGC
TTGTCTTGGATTGCCTCAGGAGTCTTATAATAACAATAAATCGTTTTTTG
CCCCCGCAGCGGCGTCGAACGAGGACTGGGGCGACCTGGTCTGGGGCGAG
AGGCACACGGCGAAGTACCCTAGCGCTTGGGGTTTCCCAGCATTCGACCT
CAGCGTGTGCGGTCGGGGGCTCTTCGGCAACATCACGTCGTCCTGGCCCG
CCATCCTATCCACCGGATCGGCTTGTCTTGGATTGCCTCAGGAGATGTTC
GACAATCTCATGGCCTGGCTGCCTTGCGGTACGCTGGAGAAAAGCGTCGC
CCACTGGGTGTGCTACATCGACCAAGACACGATTGCGTCTGCTGGGCTTC
CGTGGCTATCTTTCAGGATGTTCGACAATCTCATGGCCTGGCTGCCTTGC
GGTACGCTGGAGAAAAGCGTCGCCCACTGGGTGTGCTACATCGACCAAGA
CACGATTGCGTCTGCTGGGCTTCCGTGGCTATCTTTCAGG
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