mRNA_H-elongata_contig14994.3343.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig14994.3343.1
Unique NamemRNA_H-elongata_contig14994.3343.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig14994.3343.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig14994contigH-elongata_contig14994:6681..7162 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons2
Model size469
Cds size291
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig14994.3343.1prot_H-elongata_contig14994.3343.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig14994 6708..7011 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929887.5193543-UTR-H-elongata_contig14994:6680..67071622929887.5193543-UTR-H-elongata_contig14994:6680..6707Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig14994 6681..6707 +
1691679195.890511-UTR-H-elongata_contig14994:6680..67071691679195.890511-UTR-H-elongata_contig14994:6680..6707Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig14994 6681..6707 +
1622929887.58901-UTR-H-elongata_contig14994:7011..71621622929887.58901-UTR-H-elongata_contig14994:7011..7162Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig14994 7012..7162 +
1691679195.9163964-UTR-H-elongata_contig14994:7011..71621691679195.9163964-UTR-H-elongata_contig14994:7011..7162Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig14994 7012..7162 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929887.5527065-CDS-H-elongata_contig14994:6707..68851622929887.5527065-CDS-H-elongata_contig14994:6707..6885Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14994 6708..6885 +
1691679195.8997622-CDS-H-elongata_contig14994:6707..68851691679195.8997622-CDS-H-elongata_contig14994:6707..6885Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14994 6708..6885 +
1622929887.5753524-CDS-H-elongata_contig14994:6898..70111622929887.5753524-CDS-H-elongata_contig14994:6898..7011Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14994 6899..7011 +
1691679195.907489-CDS-H-elongata_contig14994:6898..70111691679195.907489-CDS-H-elongata_contig14994:6898..7011Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14994 6899..7011 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig14994.3343.1

>prot_H-elongata_contig14994.3343.1 ID=prot_H-elongata_contig14994.3343.1|Name=mRNA_H-elongata_contig14994.3343.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=97bp
MDRLHGSYAKSTTTSSAQHGTAHHQVLQRIIGKRGRSRGGKKRLSPIALT
HSLTHSRRQHARARRSSKTHRSKRPTSGLFLLTLFSLIAYSTLHFV*
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mRNA from alignment at H-elongata_contig14994:6681..7162+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig14994.3343.1 ID=mRNA_H-elongata_contig14994.3343.1|Name=mRNA_H-elongata_contig14994.3343.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=482bp|location=Sequence derived from alignment at H-elongata_contig14994:6681..7162+ (Himanthalia elongata Himel1 dioecious)
GTAGACGAAGCTCTCCTGGACGGTTAGATGGATAGATTACATGGATCCTA
CGCCAAGAGCACTACAACAAGCTCCGCACAACACGGTACGGCACACCACC
AGGTCCTACAGCGTATCATCGGAAAGCGAGGTCGATCGCGAGGTGGCAAG
AAGCGACTGTCGCCCATAGCACTTACTCACTCACTCACTCACTCCCGAAG
ACAACCACGCACACGCATATGCGCGCGCGCGCCGATCATCCAAGACTCAT
CGCTCCAAGAGACCCACCTCCGGTCTCTTCCTCCTTACCCTTTTCTCTCT
CATTGCCTATTCAACTCTCCACTTTGTATAGGCATCTCAAGAGTCCGTGA
CACGCGAGCGAGGCCTCTACGAGCAGGCGATGTCGACCGTGCTTCTACCG
CACCTGTATCTTCTGCTTCACGTACTCCTTTGGCACGAATATCAGACTAG
ACGCCGCGTTTCCGCAAGCCGCCGCCAACGCG
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Coding sequence (CDS) from alignment at H-elongata_contig14994:6681..7162+

>mRNA_H-elongata_contig14994.3343.1 ID=mRNA_H-elongata_contig14994.3343.1|Name=mRNA_H-elongata_contig14994.3343.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=582bp|location=Sequence derived from alignment at H-elongata_contig14994:6681..7162+ (Himanthalia elongata Himel1 dioecious)
ATGGATAGATTACATGGATCCTACGCCAAGAGCACTACAACAAGCTCCGC
ACAACACGGTACGGCACACCACCAGGTCCTACAGCGTATCATCGGAAAGC
GAGGTCGATCGCGAGGTGGCAAGAAGCGACTGTCGCCCATAGCACTTACT
CACTCACTCACTCACTCCCGAAGACAACATGGATAGATTACATGGATCCT
ACGCCAAGAGCACTACAACAAGCTCCGCACAACACGGTACGGCACACCAC
CAGGTCCTACAGCGTATCATCGGAAAGCGAGGTCGATCGCGAGGTGGCAA
GAAGCGACTGTCGCCCATAGCACTTACTCACTCACTCACTCACTCCCGAA
GACAACATGCGCGCGCGCGCCGATCATCCAAGACTCATCGCTCCAAGAGA
CCCACCTCCGGTCTCTTCCTCCTTACCCTTTTCTCTCTCATTGCCTATTC
AACTCTCCACTTTGTATAGATGCGCGCGCGCGCCGATCATCCAAGACTCA
TCGCTCCAAGAGACCCACCTCCGGTCTCTTCCTCCTTACCCTTTTCTCTC
TCATTGCCTATTCAACTCTCCACTTTGTATAG
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