mRNA_H-elongata_contig14994.3342.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig14994.3342.1 vs. uniprot
Match: D7G8X0_ECTSI (Mitochondrial carrier protein-like n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8X0_ECTSI) HSP 1 Score: 401 bits (1030), Expect = 1.030e-129 Identity = 211/302 (69.87%), Postives = 247/302 (81.79%), Query Frame = 1
Query: 4 AVAVSVKTELEAAVLFPIDTAKTLRQANPQAIRGTREALAYVWRTRGALAIYTGLPTAVFGAMPSSALYFGTYEAVKSRLLGAATRAFLPGESEGGGRGDDTRGGAGESLHPVTRAAVHALAAACGNAASSLIFVPKEYVKQKIQASGMAAAGSARETATEIVRRTLREKGVRGLYCGYRATLSRNIPSAVIRFSVNEELKILLGPERLVSTPPVYLLVGAVAGGCASGLTTPFDVLKTRVATGSLDGSRGLARNMVSIVAENGWQGLFAGFQPRVIMSGLFTAVGFSSFETFKSILGVSPL 909
AVA ++ + A LFPIDTAKTLRQANP+A +GTR+ALA++ RTRG AIYTG+PTAV GAMPSSALYFGTYEAVK+RL+ A F G GG R + G +HP RAA HA+AAACGNAASSLIFVPKEYVKQ +QASGM AAG ARETA EIVRRT++EKGV+GLY GY ATLSRN+PSA+IRFS+ EE+K+ +GP RL+S PP YLL GA+AG CASG+TTPFDVLKTRVATGSL+G RG A+NM +IVA++GW+GL+AGFQPRV+MSGLFTAVGF SFE K +LGVSPL
Sbjct: 28 AVAGAMAGAIATAALFPIDTAKTLRQANPKAFKGTRDALAHICRTRGPWAIYTGIPTAVVGAMPSSALYFGTYEAVKTRLMRVAANNFPAGP--GGPR--EGEGXXXXXVHPAARAAAHAVAAACGNAASSLIFVPKEYVKQTLQASGMGAAGGARETAKEIVRRTVKEKGVKGLYRGYWATLSRNVPSAIIRFSLYEEIKLFIGPARLMSAPPAYLLAGALAGACASGMTTPFDVLKTRVATGSLEGGRGFAKNMATIVADDGWKGLYAGFQPRVVMSGLFTAVGFGSFEAIKVVLGVSPL 325
BLAST of mRNA_H-elongata_contig14994.3342.1 vs. uniprot
Match: A0A6H5JI22_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI22_9PHAE) HSP 1 Score: 399 bits (1026), Expect = 2.920e-127 Identity = 209/302 (69.21%), Postives = 246/302 (81.46%), Query Frame = 1
Query: 4 AVAVSVKTELEAAVLFPIDTAKTLRQANPQAIRGTREALAYVWRTRGALAIYTGLPTAVFGAMPSSALYFGTYEAVKSRLLGAATRAFLPGESEGGGRGDDTRGGAGESLHPVTRAAVHALAAACGNAASSLIFVPKEYVKQKIQASGMAAAGSARETATEIVRRTLREKGVRGLYCGYRATLSRNIPSAVIRFSVNEELKILLGPERLVSTPPVYLLVGAVAGGCASGLTTPFDVLKTRVATGSLDGSRGLARNMVSIVAENGWQGLFAGFQPRVIMSGLFTAVGFSSFETFKSILGVSPL 909
AVA ++ + A LFPIDTAKTLRQANP+A +G+R+ALA++ RTRG AIYTG+PTAV GAMPSSALYFGTYEAVK+RL+ A F G GG R + G +HP RAA HA+AAACGNAASSLIFVPKEYVKQ +QASGM A G ARETA EI+RRT+REKGVRGLY GY ATLSRN+PSA+IRFS+ EE+K+ +GP RL+S PP YLL GA+AG CASG+TTPFDVLKTRVATGSL+G RG +NM +IVA++GW+GL+AGFQPRV+MSGLFTAVGF SFE K++LGVSPL
Sbjct: 156 AVAGAMAGAIATAALFPIDTAKTLRQANPKAFKGSRDALAHICRTRGPWAIYTGIPTAVVGAMPSSALYFGTYEAVKTRLMRVAANNFPAGP--GGPR--EGEGXXXXXVHPAARAAAHAVAAACGNAASSLIFVPKEYVKQTLQASGMGAVGGARETAKEIIRRTVREKGVRGLYRGYWATLSRNVPSAIIRFSLYEEIKLFIGPARLMSAPPAYLLAGALAGACASGMTTPFDVLKTRVATGSLEGGRGFVKNMATIVADDGWKGLYAGFQPRVVMSGLFTAVGFGSFEAIKAVLGVSPL 453
BLAST of mRNA_H-elongata_contig14994.3342.1 vs. uniprot
Match: A0A836CFD2_9STRA (Mitochondrial carrier protein-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFD2_9STRA) HSP 1 Score: 277 bits (709), Expect = 4.030e-83 Identity = 158/290 (54.48%), Postives = 204/290 (70.34%), Query Frame = 1
Query: 46 LFPIDTAKTLRQANPQAIRGTREALAYVWRTRGALAIYTGLPTAVFGAMPSSALYFGTYEAVKSRLLGAATRAFLPGESEGGGRGDDTRGGAGESLHPVTRAAVHALAAACGNAASSLIFVPKEYVKQKIQAS-GMAAAGSARETATEIVRRTLREKGVRGLYCGYRATLSRNIPSAVIRFSVNEELKILLGPERLVSTP----PVYLLVGAVAGGCASGLTTPFDVLKTRVATGSLDGSRGLARNMVSIVAENGWQGLFAGFQPRVIMSGLFTAVGFSSFETFKSILGV 900
L PIDTAKTLRQ+NPQA +GT +AL+++ +T G +IY G+ AV G+MPSSALYFG YE+VK+RL AA R + GGG L P RA VH ++AACGNAASSL+FVPKEYVKQ +QA G A G A A +V+ TLR++G+RGLY GY ATLSRN+PSA++RF++ EE+K+ L P L + P P +LL GAVAG ASGLTTPFDV+KT+VATG LD + G+ +++ + E G +GL+ G QPR+++S LFTAVGF SFE K++L V
Sbjct: 16 LHPIDTAKTLRQSNPQAFKGTIQALSHMLKTHGPGSIYAGVGAAVVGSMPSSALYFGAYESVKARLTRAAGRRW------GGGSAQLV-------LPPGVRAGVHVISAACGNAASSLVFVPKEYVKQSLQAQKGAAMRGQATLNAVALVKATLRQQGIRGLYRGYWATLSRNVPSAILRFTLYEEIKLHLRPN-LANMPGKLSPAFLLAGAVAGAVASGLTTPFDVVKTQVATGRLDRNLGVIKSLTKLGREGGIRGLYVGAQPRMLLSSLFTAVGFGSFEAMKTLLQV 291
BLAST of mRNA_H-elongata_contig14994.3342.1 vs. uniprot
Match: A0A7S2STS4_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2STS4_9STRA) HSP 1 Score: 226 bits (575), Expect = 2.350e-63 Identity = 139/287 (48.43%), Postives = 176/287 (61.32%), Query Frame = 1
Query: 43 VLFPIDTAKTLRQANPQAIRGTREALAYVWRTRGALAIYTGLPTAVFGAMPSSALYFGTYEAVKSRLLGAATRAFLPGESEGGGRGDDTRGGAGESLHPVTRAAVHALAAACGNAASSLIFVPKEYVKQKIQASGMAAAGSARETATEIVRRTLREKGVRGLYCGYRATLSRNIPSAVIRFSVNEELKILLGPERLVSTPP-VYLLVGAVAGGCASGLTTPFDVLKTRVATGSLDGSRGLARNMVSIVAENGWQGLFAGFQPRVIMSGLFTAVGFSSFETFKSILGV 900
+L P+DT KTLRQ +PQ + T AL+ RTRG A+Y G+ A GAMPSSALYFG Y+ VK RL S GG +GG+ L R VH AA CGNAASSL+FVPKE+VKQ++Q + A ++V T++ KGV +Y GY ATL RNIPSA IRF + EE KILL RL S P + L GAV+G AS TTP DV+KT+ ATG+LD SRGL + +V G GL G Q R++ S LF+++GF++FE+ KS+LGV
Sbjct: 46 ILHPLDTCKTLRQRHPQQYKSTLAALSSTLRTRGIGALYRGVIPAAIGAMPSSALYFGFYDIVKRRLTRFVANRDQQVNSRGGXXXXXXQGGS--PLESGIRPVVHMTAAVCGNAASSLVFVPKEFVKQQLQTNTKYRGLGG---AFQVVAHTVKTKGVGAVYAGYTATLLRNIPSAAIRFVIYEEAKILL-ESRLGSVGPREFFLAGAVSGLVASSCTTPMDVMKTKFATGALDRSRGLLTCVAEVVRREGAVGLLTGLQGRILWSTLFSSIGFAAFESAKSVLGV 326
BLAST of mRNA_H-elongata_contig14994.3342.1 vs. uniprot
Match: A0A4D9D8F7_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D8F7_9STRA) HSP 1 Score: 208 bits (529), Expect = 4.830e-57 Identity = 141/294 (47.96%), Postives = 178/294 (60.54%), Query Frame = 1
Query: 43 VLFPIDTAKTLRQANPQAIRGTREALAYVWRTRGALAIYTGLPTAVFGAMPSSALYFGTYEAVKSRLLGAA---TRAFLPGESEGGGRGDDTRGGAGESLHPVTRAAVHALAAACGNAASSLIFVPKEYVKQKIQASGMAAAGSARETATEIVRRTLREKGVRGLYCGYRATLSRNIPSAVIRFSVNEELKILLGPERL-----VSTPPVYLLVGAVAGGCASGLTTPFDVLKTRVATGSLDGSRGLARNMVSIVAENGWQGLFAGFQPRVIMSGLFTAVGFSSFETFKSILGV 900
VL+PID AKTLRQA P A RG +L+ R G +++ GL AV G+MPSSALYFG YE VK RL+ T A S+G R + R HALAAA GN ASSLIFVPKE +KQ++Q A G A + LREKGVRGLY GYRATL RNIPSAV+RF++ EE K+ LG + L +S P V ++ GA+AG +S TTP DV+KTR+A + R + ++ + + G GL+AG + RV+ S LFTAVGFSSFE K++LGV
Sbjct: 21 VLYPIDVAKTLRQAGP-ASRGA--SLSSQARIYGLGSLWAGLTPAVLGSMPSSALYFGVYEYVKRRLVAGIRPRTEASSSVSSDGSKELYQRR------AQVLRRWTAHALAAAAGNTASSLIFVPKEVLKQQLQMY-RNAHGGASLGFPGVFASILREKGVRGLYSGYRATLLRNIPSAVLRFALYEEFKLYLGGQALWGAISLSGPRVAVVAGALAGALSSAATTPLDVIKTRMAINACPPGRDVLGCLLDVAQKEGVPGLYAGVRFRVMYSALFTAVGFSSFEASKALLGV 304
BLAST of mRNA_H-elongata_contig14994.3342.1 vs. uniprot
Match: W7TPC7_9STRA (S-adenosylmethionine carrier 1 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TPC7_9STRA) HSP 1 Score: 208 bits (530), Expect = 6.270e-56 Identity = 140/291 (48.11%), Postives = 180/291 (61.86%), Query Frame = 1
Query: 43 VLFPIDTAKTLRQANPQAIRGTREALAYVWRTRGALAIYTGLPTAVFGAMPSSALYFGTYEAVKSRLLGAATRAFLPGESEGGGRGDDTRGGAGESLHPVTRAAVHALAAACGNAASSLIFVPKEYVKQKIQASGMAAAGSARETATEIVRRTLREKGVRGLYCGYRATLSRNIPSAVIRFSVNEELKILLGPERL-----VSTPPVYLLVGAVAGGCASGLTTPFDVLKTRVATGSLDGSRGLARNMVSIVAENGWQGLFAGFQPRVIMSGLFTAVGFSSFETFKSILGV 900
VL+PID AKTLRQA P A RG +L+ R G +++ GL AV G+MPSSALYFG YE VK RL+ A R E+ D ++ + + R HALAAA GN ASSLIFVPKE +KQ++Q A G A + LREKGVRGLY GYRATL RNIPSAV+RF++ EE K+ LG + L +S P V ++ GA+AG +S TTP DV+KTR+A + R + ++ + + G GL+AG + RV+ S LFTAVGFSSFE K++LGV
Sbjct: 128 VLYPIDVAKTLRQAGP-ASRGA--SLSSQARIYGLGSLWAGLTPAVLGSMPSSALYFGVYEYVKRRLV-AGIRPRT--EASSSISSDGSKELYHRRVQVLRRWTAHALAAAAGNTASSLIFVPKEVLKQQLQMY-RNAHGGASLGFPGVFASILREKGVRGLYSGYRATLLRNIPSAVLRFALYEEFKLYLGGQALSGAISLSGPRVAVVAGALAGALSSAATTPLDVIKTRMAINACPPGRDVLGCLLDVAQKEGVPGLYAGVRFRVMYSALFTAVGFSSFEASKALLGV 411
BLAST of mRNA_H-elongata_contig14994.3342.1 vs. uniprot
Match: A0A7R9UPS8_DIALT (Hypothetical protein (Fragment) n=3 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A7R9UPS8_DIALT) HSP 1 Score: 203 bits (516), Expect = 2.540e-55 Identity = 117/285 (41.05%), Postives = 168/285 (58.95%), Query Frame = 1
Query: 43 VLFPIDTAKTLRQANPQAIRGTREALAYVWRTRGALAIYTGLPTAVFGAMPSSALYFGTYEAVKSRLLGAATRAFLPGESEGGGRGDDTRGGAGESLHPVTRAAVHALAAACGNAASSLIFVPKEYVKQKIQASGMAAAGSARETATEIVRRTLREKGVRGLYCGYRATLSRNIPSAVIRFSVNEELKILLGPERLVSTPPVYLLV-GAVAGGCASGLTTPFDVLKTRVATGSLDGSRGLARNMVSIVAENGWQGLFAGFQPRVIMSGLFTAVGFSSFETFKSIL 894
+L P+DT KT+RQAN GT + +W+ G +Y GL TA+ GAMPSS ++FGTYE +K+RL L RA +H ++AACGNAASSLIFVPKE VKQ++QA+ +A + ++V ++E GVRGLY Y AT+ RNIP+ V++F + EEL++ L +T V + GA++G C+S L TP DV+KTR+ATG + G+ R++V + E G GLFAG + R++ + LF+A+G S +E K +L
Sbjct: 37 LLHPLDTVKTVRQANRAQFPGTFRTIRRIWQQNGPRGLYGGLGTAMVGAMPSSFVFFGTYEFMKARLQALKPDCSLD-----------------------ERARIHVVSAACGNAASSLIFVPKEMVKQRLQAARVAGVSTG---VRQVVSTIVKEHGVRGLYAAYSATIMRNIPTTVLKFLIYEELRLRLAASDESATLRVRSMACGAISGACSSVLMTPLDVVKTRLATGQYAATLGMRRSLVKLATEEGLSGLFAGAKARMVGAALFSAIGLSCYEACKQLL 295
BLAST of mRNA_H-elongata_contig14994.3342.1 vs. uniprot
Match: A0A0G4EWL4_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4EWL4_VITBC) HSP 1 Score: 188 bits (477), Expect = 3.250e-49 Identity = 132/316 (41.77%), Postives = 177/316 (56.01%), Query Frame = 1
Query: 40 AVLFPIDTAKTLRQANPQ----------AIRGTREALAYVWRTRGALAIYTGLPTAVFGAMPSSALYFGTYEAVKSRLLGA--ATRAFLPGESEGGGRGDDTRGGAGESLHPVT-RAAVHALAAACGNAASSLIFVPKEYVKQKIQASGMAAAGSARE-TATEIVRRTLREKGVRGLYCGYRATLSRNIPSAVIRFSVNEELKILLGPE-------------RLVSTPPVYL-LVGAVAGGCASGLTTPFDVLKTRVATGSLDGSRGLARNMVSIVAENGWQGLFAGFQPRVIMSGLFTAVGFSSFETFKSILGVS 903
AVL P+DT K Q + ++ T + + + +G A+Y+G +V GA+PSSALYFG YE VKSR A R L GE GG PV RA V+ALAAA GNA S+++FVPKE+VKQ++QAS A G+ + ++ +I+ ++E G++G+Y GYRATL RN+PS+V+RFSV EELK L+ R + PVYL L GAVA TTP D +KT +AT L + +N+ ++ E G L AG + RV+ SGLF+AVG SFE FKS L VS
Sbjct: 30 AVLHPVDTVKVYIQIERRREHTGHHHRPSLGDTLRTMRAIRKEKGIGALYSGFLPSVLGALPSSALYFGAYELVKSRATSVLEARRRRLSGE-----------GGCQNGPLPVQQRAFVNALAAASGNAVSAMVFVPKEFVKQQLQASKSGAIGAGQILSSVDILWAAVKESGIKGVYRGYRATLVRNVPSSVLRFSVFEELKRLIVSTCVTPSSQLPSFSLRSAAYLPVYLFLAGAVAXXXXXXXTTPMDNVKTNIATRQLSQDMSIGQNLRTLWKEQGMSSLLAGMKTRVLYSGLFSAVGLGSFEAFKSALRVS 334
BLAST of mRNA_H-elongata_contig14994.3342.1 vs. uniprot
Match: A0A2V3J0Y3_9FLOR (Protein MITOFERRINLIKE 1, chloroplastic n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J0Y3_9FLOR) HSP 1 Score: 186 bits (472), Expect = 4.590e-49 Identity = 116/287 (40.42%), Postives = 162/287 (56.45%), Query Frame = 1
Query: 43 VLFPIDTAKTLRQANPQAIRGTREALAYVWRTRGALAIYTGLPTAVFGAMPSSALYFGTYEAVKSRLLGAATRAFLPGESEGGGRGDDTRGGAGESLHPVTRAAVHALAAACGNAASSLIFVPKEYVKQKIQASGMAAAGSARETATEIVRRTLREKGVRGLYCGYRATLSRNIPSAVIRFSVNEELKILLGPERLVS-----TPPVYLLVGAVAGGCASGLTTPFDVLKTRVATGSLDGSRGLARNMVSIVAENGWQGLFAGFQPRVIMSGLFTAVGFSSFETFKS 888
+L P+DT KT+RQA+P RG L + RTRG A+Y G+ A+ G+ SSALYFG YE VK L + +F P TR + AL+AACGN ASS++FVPKE VKQ++Q++ G+ A + L G+ GLY GY+ATL RNIPS ++RF++ EE K+ + + + T P + G++AG +S TTP DVLKTR ATG++ + + IV +G GLF G +PR++ + LF A+GFSS+E KS
Sbjct: 36 LLHPLDTVKTVRQADPTHFRGMAPTLLKIIRTRGPFALYAGIVPALIGSAFSSALYFGAYEMVKGALAQMSPYSFQK---------------------PRTRIPLTALSAACGNVASSVLFVPKEVVKQRMQSA--VDPGNFFGAAKNV----LAASGISGLYRGYKATLLRNIPSTMLRFAIYEEAKLAIRRLKRENSDKPLTFPEVIAAGSIAGVASSACTTPMDVLKTRFATGAIKPGTAILPAIRDIVGRDGVPGLFVGIRPRIVWAALFAAIGFSSYEVCKS 295
BLAST of mRNA_H-elongata_contig14994.3342.1 vs. uniprot
Match: A0A448Z9E8_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z9E8_9STRA) HSP 1 Score: 189 bits (479), Expect = 8.150e-49 Identity = 131/303 (43.23%), Postives = 169/303 (55.78%), Query Frame = 1
Query: 40 AVLFPIDTAKTLRQANPQAIRGTREALAYVWRTRGALA-IYTGLPTAVFGAMPSSALYFGTYEAVKSRLLGAATRAFLPGESEGGGRGDDTRGGAGESLHPVTRAAVHALAAACGNAASSLIFVPKEYVKQKIQASGMAAAGSARETATEIVRRTLREKGVRGLYCGYRATLSRNIPSAVIRFSVNEELKI--LLGPERLVSTPPVY--------LLVGAVAGGCASGLTTPFDVLKTRVATGSLDGSRGLARNMVSIVAENGWQGLFAGFQPRVIMSGLFTAVGFSSFETFKSILGVSPLTS 915
AVL+PID+AKTLRQ+NP A R+AL + +++ AL +Y G+ A GA+PSSALYFG YE+ K L + + ++ DD R R VH LAAA GN SS +FVPKE +KQ++Q A + IVR + G+ GLY GY ATL RNIPSA IRF + EELK P + P L GAVAG +S TP DV+KTR+ATGS G+ M+ +V E GW+GL+AG RV+ SG F+A+GF +FE K LGVS +S
Sbjct: 131 AVLYPIDSAKTLRQSNPTAYSSVRDALWTMLKSKNALRRVYRGILPAALGAIPSSALYFGAYESSKVTL-----KRLVFQKNHKNVDSDDYR----------ARLFVHGLAAASGNVISSFVFVPKEVIKQQLQIRASEATTGTVQAIGSIVR----QNGISGLYAGYGATLLRNIPSATIRFVLYEELKRKWATAPSGESGSSPQTQKLRAAGTFLAGAVAGATSSFAMTPIDVVKTRMATGSCP--LGVRSCMLHVVGEVGWKGLYAGAGSRVLWSGAFSAIGFGTFELVKGYLGVSSTSS 412 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig14994.3342.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig14994.3342.1 >prot_H-elongata_contig14994.3342.1 ID=prot_H-elongata_contig14994.3342.1|Name=mRNA_H-elongata_contig14994.3342.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=265bp MPSSALYFGTYEAVKSRLLGAATRAFLPGESEGGGRGDDTRGGAGESLHPback to top mRNA from alignment at H-elongata_contig14994:2741..7796- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig14994.3342.1 ID=mRNA_H-elongata_contig14994.3342.1|Name=mRNA_H-elongata_contig14994.3342.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=5056bp|location=Sequence derived from alignment at H-elongata_contig14994:2741..7796- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig14994:2741..7796- >mRNA_H-elongata_contig14994.3342.1 ID=mRNA_H-elongata_contig14994.3342.1|Name=mRNA_H-elongata_contig14994.3342.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1590bp|location=Sequence derived from alignment at H-elongata_contig14994:2741..7796- (Himanthalia elongata Himel1 dioecious)back to top |