mRNA_H-elongata_contig149841.3338.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig149841.3338.1 vs. uniprot
Match: A0A6H5L660_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L660_9PHAE) HSP 1 Score: 158 bits (399), Expect = 2.160e-43 Identity = 93/218 (42.66%), Postives = 137/218 (62.84%), Query Frame = 1
Query: 1 ELTFGTFNVRTAAVKGVNGIG-NIDSLLRPCAARGYGVIRLQEIKQDGGSEITETGYRIYFSGDYSGLKGEKGQHGVGLAIKEEIVNKAGKDDIVIEYISARLLKARISI-KSNFVTFVVAYAPAE--EATEG----QKAKYITALNSTVLSVPAREYVFILTDENARTGKRGEGGRDAESKILGTYGRDVLNKHGKLLLSFAQGNKLALLNPFFLRP 630
+L+FGTFNVRT A G N IG N+ ++++ C+A G VI LQE +++G I GY I +SG +G K ++G HGVG+AIKE + G++ +E I RL+K R+ I ++ +TFVV YAP E T G K + TAL++ + V + +++ +L D NARTG+R +G DA KI+G YGRD++N +G+ LL A N+L+L N +F P
Sbjct: 147 DLSFGTFNVRTLAYSGRNPIGHNVMTVMQICSATGCDVIGLQETRREGQGSIAHDGYVIIWSGARAGTKDKRGVHGVGIAIKETMWESVGEEGRKVECIGPRLMKVRLRIGRTCGITFVVRYAPTETVRTTAGGDINAKDSFWTALDAVIREVHSHDHLVVLMDANARTGRRRDGCCDA--KIMGVYGRDIMNNNGERLLGLASNNQLSLTNTYFRTP 362
BLAST of mRNA_H-elongata_contig149841.3338.1 vs. uniprot
Match: A0A6H5K3Q1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3Q1_9PHAE) HSP 1 Score: 162 bits (410), Expect = 3.160e-43 Identity = 96/218 (44.04%), Postives = 139/218 (63.76%), Query Frame = 1
Query: 1 ELTFGTFNVRTAAVKGVNGIG-NIDSLLRPCAARGYGVIRLQEIKQDGGSEITETGYRIYFSGDYSGLKGEKGQHGVGLAIKEEIVNKAGKDDIVIEYISARLLKARISI-KSNFVTFVVAYAPAE--EATEG----QKAKYITALNSTVLSVPAREYVFILTDENARTGKRGEGGRDAESKILGTYGRDVLNKHGKLLLSFAQGNKLALLNPFFLRP 630
+L+FGTFNVRT A G N IG N+ ++++ C+A G VI LQE ++ G I GY I +SG +G K ++G HGVG+AIKE + G++ +E IS RL+K R+ I ++ VTF+V YAP E TEG K + TAL++ + V +R+++ +L D NARTG+R +G DA KI+G YGRD++N +G+ LL A N+L+L N +F P
Sbjct: 174 DLSFGTFNVRTLAYSGRNPIGHNVMTVMQICSATGCDVIGLQETRRAGQGSIAHDGYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFLVGYAPTETVRTTEGCDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRKGCCDA--KIMGAYGRDIMNNNGERLLGLASDNQLSLTNTYFRTP 389
BLAST of mRNA_H-elongata_contig149841.3338.1 vs. uniprot
Match: A0A6H5JQH5_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQH5_9PHAE) HSP 1 Score: 162 bits (411), Expect = 1.510e-42 Identity = 98/218 (44.95%), Postives = 140/218 (64.22%), Query Frame = 1
Query: 1 ELTFGTFNVRTAAVKGVNGIG-NIDSLLRPCAARGYGVIRLQEIKQDGGSEITETGYRIYFSGDYSGLKGEKGQHGVGLAIKEEIVNKAGKDDIVIEYISARLLKARISI-KSNFVTFVVAYAPAEEA--TEG----QKAKYITALNSTVLSVPAREYVFILTDENARTGKRGEGGRDAESKILGTYGRDVLNKHGKLLLSFAQGNKLALLNPFFLRP 630
+L+FGTFNVRT A G N IG N+ ++++ CAA VI LQE ++ G IT GY I +SG +G K ++G HGVG+AIKE + + G+ +E IS RL+K R+ I ++ VTFVV YAP E A T G K + TAL++ + V +R+++ +L D NARTG+R +G DA KI+G YGRD++N +G+ LL A N+L+L+N +F P
Sbjct: 89 DLSFGTFNVRTLAYSGRNPIGHNVMTVMQICAATDCDVIGLQETRRAGQGAITHDGYVIIWSGARAGTKDKRGVHGVGIAIKETMWDSVGEGGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETARNTAGGDVNAKDSFWTALDAEIREVHSRDHLVVLMDANARTGRRRDGCCDA--KIMGAYGRDIMNNNGERLLGLAADNRLSLINTYFRTP 304
BLAST of mRNA_H-elongata_contig149841.3338.1 vs. uniprot
Match: A0A6H5JMB4_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMB4_9PHAE) HSP 1 Score: 159 bits (401), Expect = 9.630e-42 Identity = 95/218 (43.58%), Postives = 137/218 (62.84%), Query Frame = 1
Query: 1 ELTFGTFNVRTAAVKGVNGIG-NIDSLLRPCAARGYGVIRLQEIKQDGGSEITETGYRIYFSGDYSGLKGEKGQHGVGLAIKEEIVNKAGKDDIVIEYISARLLKARISI-KSNFVTFVVAYAPAE--EATEG----QKAKYITALNSTVLSVPAREYVFILTDENARTGKRGEGGRDAESKILGTYGRDVLNKHGKLLLSFAQGNKLALLNPFFLRP 630
+L+FGTFNVRT A G N IG N+ ++++ C+A G VI LQE ++ G I GY I +SG +G K ++G HGVG+AIKE + G++ +E IS RL+K R+ I ++ VTFVV YAP E T G K + TAL++ + V +R+++ +L D NARTG+R +G DA KI+G YGRD++N +G+ LL A N+L+L N + P
Sbjct: 85 DLSFGTFNVRTLAYSGRNPIGHNVMTVMQICSATGCDVIGLQETRRAGQGSIAHDGYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRDGCCDA--KIMGAYGRDIMNNNGERLLGLASDNQLSLTNTYVQTP 300
BLAST of mRNA_H-elongata_contig149841.3338.1 vs. uniprot
Match: A0A6H5KV75_9PHAE (Endo/exonuclease/phosphatase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV75_9PHAE) HSP 1 Score: 156 bits (394), Expect = 1.010e-41 Identity = 93/218 (42.66%), Postives = 135/218 (61.93%), Query Frame = 1
Query: 1 ELTFGTFNVRTAAVKGVNGIG-NIDSLLRPCAARGYGVIRLQEIKQDGGSEITETGYRIYFSGDYSGLKGEKGQHGVGLAIKEEIVNKAGKDDIVIEYISARLLKARISI-KSNFVTFVVAYAPAE--EATEG----QKAKYITALNSTVLSVPAREYVFILTDENARTGKRGEGGRDAESKILGTYGRDVLNKHGKLLLSFAQGNKLALLNPFFLRP 630
+L+FGTFNVRT A G N IG N+ ++++ C+A G VI LQE ++ G I GY I +SG +G K ++G HGVG+ IKE + G++ +E I RL+K R+ I ++ V FVV YAP E T G K + TAL++ + V +R+++ +L D NARTG+R +G DA KI+G YGRD++N +G+ LL A N+L+L N +F P
Sbjct: 80 DLSFGTFNVRTLACSGRNPIGHNVMTVMQICSATGCDVIGLQETRRAGQGSIAHDGYVIIWSGARAGTKDKRGVHGVGIVIKEAMWESVGEEGRTVECICPRLMKVRLQIGRTCGVAFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRDGCCDA--KIMGAYGRDIMNNNGERLLGLASDNQLSLTNTYFRTP 295
BLAST of mRNA_H-elongata_contig149841.3338.1 vs. uniprot
Match: A0A6H5K1H7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1H7_9PHAE) HSP 1 Score: 159 bits (403), Expect = 1.740e-41 Identity = 95/218 (43.58%), Postives = 138/218 (63.30%), Query Frame = 1
Query: 1 ELTFGTFNVRTAAVKGVNGIG-NIDSLLRPCAARGYGVIRLQEIKQDGGSEITETGYRIYFSGDYSGLKGEKGQHGVGLAIKEEIVNKAGKDDIVIEYISARLLKARISI-KSNFVTFVVAYAPAE--EATEG----QKAKYITALNSTVLSVPAREYVFILTDENARTGKRGEGGRDAESKILGTYGRDVLNKHGKLLLSFAQGNKLALLNPFFLRP 630
+L+FGTFNV T A G N IG N+ ++++ C+A G VI LQE +++G I GY I +SG +G K ++G HGVG+AIKE + G++ +E IS RL+K R+ I ++ VTFVV YAP E T G K + TAL++ + V +R+++ +L D NARTG+R +G DA KI+G YGRD++N +G+ LL A N+L+L N +F P
Sbjct: 656 DLSFGTFNVCTLAYSGRNPIGHNVMTVMQICSATGCDVIGLQETRREGQGSIAHDGYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVRYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRDGCCDA--KIMGAYGRDIMNNNGERLLGLASDNQLSLTNTYFRTP 871
BLAST of mRNA_H-elongata_contig149841.3338.1 vs. uniprot
Match: A0A6H5J6W7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J6W7_9PHAE) HSP 1 Score: 156 bits (394), Expect = 2.000e-40 Identity = 92/218 (42.20%), Postives = 137/218 (62.84%), Query Frame = 1
Query: 1 ELTFGTFNVRTAAVKGVNGIG-NIDSLLRPCAARGYGVIRLQEIKQDGGSEITETGYRIYFSGDYSGLKGEKGQHGVGLAIKEEIVNKAGKDDIVIEYISARLLKARISI-KSNFVTFVVAYAPAE--EATEG----QKAKYITALNSTVLSVPAREYVFILTDENARTGKRGEGGRDAESKILGTYGRDVLNKHGKLLLSFAQGNKLALLNPFFLRP 630
+L+FGTFNVRT A G N IG N+ ++++ C+A G V+ L E +++G I GY I +SG +G K ++G HG+G+AIKE + G++ +E IS RL+K R+ I ++ VTFVV YAP E T G K + TAL++ + V +R+++ +L D NARTG+R +G +A KI+G YGRD++N G+ LL A N+L+L N +F P
Sbjct: 36 DLSFGTFNVRTLAYSGRNPIGHNVMTVMQICSATGCDVVGLHETRREGQGSIAHDGYVIIWSGARAGTKEKRGVHGMGIAIKEVMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRDGCCNA--KIMGAYGRDIMNNSGERLLGLASDNQLSLTNTYFRTP 251
BLAST of mRNA_H-elongata_contig149841.3338.1 vs. uniprot
Match: A0A6H5KDU4_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDU4_9PHAE) HSP 1 Score: 156 bits (394), Expect = 2.180e-40 Identity = 91/217 (41.94%), Postives = 135/217 (62.21%), Query Frame = 1
Query: 1 ELTFGTFNVRTAAVKGVNGIG-NIDSLLRPCAARGYGVIRLQEIKQDGGSEITETGYRIYFSGDYSGLKGEKGQHGVGLAIKEEIVNKAGKDDIVIEYISARLLKARISI-KSNFVTFVVAYAPAEEATEG-----QKAKYITALNSTVLSVPAREYVFILTDENARTGKRGEGGRDAESKILGTYGRDVLNKHGKLLLSFAQGNKLALLNPFFLRP 630
+++FGTFNVRT A G N IG N+ ++++ C+ G VI LQE +++G I GY + +SG +G K ++G HGVG+AIKE + + AG++ +E IS RL+K R+ I ++ VTFVV YAP T K TAL++ + V +R+++ +L D NA TG R +G DA KI+G YGRD++N +G+ L A GN+L+L N +F P
Sbjct: 122 DVSFGTFNVRTLAYSGRNPIGHNVMTVMQICSTNGCDVIGLQETRREGQGSIAHDGYVVIWSGARAGTKDKRGVHGVGIAIKEAMWDSAGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPRTVRTTAGGDVNAKDSLWTALDAAIREVHSRDHLVVLMDANAHTGGRRDGCCDA--KIMGAYGRDIMNNNGERFLGLALGNQLSLTNTYFRTP 336
BLAST of mRNA_H-elongata_contig149841.3338.1 vs. uniprot
Match: A0A6H5JVN7_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVN7_9PHAE) HSP 1 Score: 152 bits (384), Expect = 5.710e-39 Identity = 92/218 (42.20%), Postives = 136/218 (62.39%), Query Frame = 1
Query: 1 ELTFGTFNVRTAAVKGVNGIG-NIDSLLRPCAARGYGVIRLQEIKQDGGSEITETGYRIYFSGDYSGLKGEKGQHGVGLAIKEEIVNKAGKDDIVIEYISARLLKARISI-KSNFVTFVVAYAPAEEA--TEG----QKAKYITALNSTVLSVPAREYVFILTDENARTGKRGEGGRDAESKILGTYGRDVLNKHGKLLLSFAQGNKLALLNPFFLRP 630
+L+FGTF+VRT G N IG N+ +++ +A G VI LQE +++G I GY I +SG +G K ++G+ GVG+AIKE + G++ +E IS RL+K R+ I ++ VTFVV YAP E T G K + TAL++ + V +R+++ +L D NARTG+R +G DA KI+G YGRD++N +G+ LL A N+L+L N +F P
Sbjct: 154 DLSFGTFSVRTLVYSGRNPIGHNVMKVMQISSATGCDVIGLQETRREGQGSIAHDGYVIIWSGARAGTKDKRGEQGVGIAIKEAMWETVGEEGRKVECISPRLMKVRLQIGRTCGVTFVVGYAPTETVRITAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRDGCCDA--KIMGAYGRDIMNNNGERLLGLASDNQLSLTNTYFRTP 369
BLAST of mRNA_H-elongata_contig149841.3338.1 vs. uniprot
Match: A0A6H5K5A7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5A7_9PHAE) HSP 1 Score: 150 bits (379), Expect = 2.980e-38 Identity = 92/218 (42.20%), Postives = 133/218 (61.01%), Query Frame = 1
Query: 1 ELTFGTFNVRTAAVKGVNGIG-NIDSLLRPCAARGYGVIRLQEIKQDGGSEITETGYRIYFSGDYSGLKGEKGQHGVGLAIKEEIVNKAGKDDIVIEYISARLLKARISIKSNF-VTFVVAYAPAE--EATEG----QKAKYITALNSTVLSVPAREYVFILTDENARTGKRGEGGRDAESKILGTYGRDVLNKHGKLLLSFAQGNKLALLNPFFLRP 630
+L+FGTFNVRT A G N IG N+ ++++ +A G VI LQE +++G I GY I +SG +G K ++G HGVG+AIKE + G++ +E IS RL+K R+ I V VV YAP E T G K + TAL++ + V +R+++ +L D NARTG+R +G DA KI+G YGRD++N +G+ L A N+L+L N +F P
Sbjct: 132 DLSFGTFNVRTLAYSGRNPIGHNVMTVMQIWSATGCDVIGLQETRREGQGSIAHDGYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGHTCGVISVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRDGCCDA--KIMGAYGRDIMNNNGERRLGLASDNQLSLTNTYFRTP 347 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig149841.3338.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig149841.3338.1 >prot_H-elongata_contig149841.3338.1 ID=prot_H-elongata_contig149841.3338.1|Name=mRNA_H-elongata_contig149841.3338.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=213bp ELTFGTFNVRTAAVKGVNGIGNIDSLLRPCAARGYGVIRLQEIKQDGGSEback to top mRNA from alignment at H-elongata_contig149841:877..1515- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig149841.3338.1 ID=mRNA_H-elongata_contig149841.3338.1|Name=mRNA_H-elongata_contig149841.3338.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=639bp|location=Sequence derived from alignment at H-elongata_contig149841:877..1515- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig149841:877..1515- >mRNA_H-elongata_contig149841.3338.1 ID=mRNA_H-elongata_contig149841.3338.1|Name=mRNA_H-elongata_contig149841.3338.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1278bp|location=Sequence derived from alignment at H-elongata_contig149841:877..1515- (Himanthalia elongata Himel1 dioecious)back to top |