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Homology
BLAST of mRNA_H-elongata_contig1498.3331.1 vs. uniprot
Match: A0A6H5JU30_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU30_9PHAE) HSP 1 Score: 348 bits (892), Expect = 6.110e-113 Identity = 209/382 (54.71%), Postives = 256/382 (67.02%), Query Frame = 1
Query: 1 MGHEFLIVTSFGIALAVTSVYLFLAHVKRISAPNKADPAGTLVRIDLTAALLEDQVARQRKSTAKRCRESLR-----TDAPAIEHPSVIKPTSIFCEITSSSTSLPSAKAVADHSFVWQERRKVGSDQNSPSRAQAISPSTSTCSTIMVPSPLWAEAFLKHAEAKRKELRDMVKRGEESAGWEAAWERLPPPRRRRVLVAVREELVHAVSHYIGQDENLFDAMCPELRTSALEEEHQAITGFSRLMRRCLDGKLLEPRSRVFATVQHALS-------EVASAGNFPKDKRGPVRAFLATFRKLCAYSFCIGVLEAVVSGRADGSAGPTMGSVCAALVKACGSGVLLWAFFNGLSQMSASNITGGDAAEGLAAGASVDGGSFL 1110
M +E LIV FG+ALAV SV LF+AHVKRI+APN+ADPAGTLV +DL AAL +D+ A + A ++P S + A H + VG+ Q + ++ + ++S +T+++PSPLWAEA LKHAE KRK+LR MVK GE +AGWEA WERLP PRRR++L AVREELVHAVS YIG+DE LFD +CP L SALEEEH+ I+G SRL+R C+DGKL EPRS+ F V+ AL+ A+A N KDKRGPVRAFL TFRKLC+ SFCIG LEA+VSGRADGSAGPT+GSVC+ALVK GSGVLL+AFF+GL QMSAS +T D+A GL AG GGS +
Sbjct: 1 MTYEALIVVVFGVALAVASVALFIAHVKRINAPNRADPAGTLVHVDLGAALAKDEAAAXXXXXXXXXXXXXXXXXXDSSAGCSGDAFALQPNGAARRRRRPSVETANRCA---HGSQQETAAAVGTQQPTDTQQPREAGASSYTATMVLPSPLWAEAILKHAEVKRKKLRSMVKSGEIAAGWEAKWERLPRPRRRKLLEAVREELVHAVSSYIGRDEALFDVICPHLSLSALEEEHRGISGLSRLVRGCMDGKLPEPRSKAFVAVRDALAMAATGAAAAAAAENVSKDKRGPVRAFLPTFRKLCSSSFCIGALEAIVSGRADGSAGPTVGSVCSALVKTGGSGVLLFAFFHGLKQMSASEVT--DSA-GLPAGVGGGGGSRI 376
BLAST of mRNA_H-elongata_contig1498.3331.1 vs. uniprot
Match: D8LCX7_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCX7_ECTSI) HSP 1 Score: 337 bits (864), Expect = 1.070e-108 Identity = 197/361 (54.57%), Postives = 248/361 (68.70%), Query Frame = 1
Query: 1 MGHEFLIVTSFGIALAVTSVYLFLAHVKRISAPNKADPAGTLVRIDLTAALLEDQVARQRKS-----------TAKRCRESLRTDAPAIEHPSVIKPTSIFCEITSSSTSLPSAKAVADHSFVWQERRKVGSDQNSPSRAQAISPSTSTCSTIMVPSPLWAEAFLKHAEAKRKELRDMVKRGEESAGWEAAWERLPPPRRRRVLVAVREELVHAVSHYIGQDENLFDAMCPELRTSALEEEHQAITGFSRLMRRCLDGKLLEPRSRVFATVQHALSEVA-------SAGNFPKDKRGPVRAFLATFRKLCAYSFCIGVLEAVVSGRADGSAGPTMGSVCAALVKACGSGVLLWAFFNGLSQ 1029
M +E LIV FG+ALAV SV LF+AHVKRI+APN+ADPAGTLV +DL AAL +D+ T++ DA A++ + S+ +A A+ S + VG+ Q + ++ + ++S +T+++PSPLWAEA LKHA+ KRK+LR MVK GE +AGWEA WERLP PR+R++L AV+EELVHAVS YIG+D+ LFDA+CP L SALEEEH+ I+G SRL+R CLDGKL EPRS+ FA V+ AL++ A +A N PKDKRGPVRAFL TFRKLC+ SFCIG LEA+VSGRADGSAGPT+GSVC+ALVK GSGVLL+AFF GL Q
Sbjct: 33 MTYEALIVIGFGVALAVASVALFVAHVKRINAPNRADPAGTLVHVDLGAALAKDEAXXXXXXXXXXXXXXXXXTSEDNSAGCSRDAFALQPNGAAR--------RRKRPSVETANRCAEGSQ-QETAAAVGTQQPADTQQAREAGTSSYTATMVLPSPLWAEAILKHADVKRKKLRSMVKSGEIAAGWEAKWERLPRPRKRKLLEAVKEELVHAVSSYIGRDDALFDAICPHLSVSALEEEHRGISGLSRLVRGCLDGKLSEPRSKAFAAVRDALAKAAIGAAAAAAAENVPKDKRGPVRAFLPTFRKLCSSSFCIGALEAIVSGRADGSAGPTVGSVCSALVKTGGSGVLLFAFFLGLKQ 384
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Hectar predicted targeting category | signal peptide |
| Ec32 ortholog description | hypothetical protein |
| Ec32 ortholog | Ec-01_001440.1 |
| Exons | 4 |
| Model size | 1496 |
| Cds size | 1131 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622929885.6851728-CDS-H-elongata_contig1498:3348..3739 | 1622929885.6851728-CDS-H-elongata_contig1498:3348..3739 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig1498 3349..3739 + |
| 1691679195.3925014-CDS-H-elongata_contig1498:3348..3739 | 1691679195.3925014-CDS-H-elongata_contig1498:3348..3739 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig1498 3349..3739 + |
| 1622929885.7015305-CDS-H-elongata_contig1498:4779..5044 | 1622929885.7015305-CDS-H-elongata_contig1498:4779..5044 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig1498 4780..5044 + |
| 1691679195.4053545-CDS-H-elongata_contig1498:4779..5044 | 1691679195.4053545-CDS-H-elongata_contig1498:4779..5044 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig1498 4780..5044 + |
| 1622929885.7189555-CDS-H-elongata_contig1498:5618..5858 | 1622929885.7189555-CDS-H-elongata_contig1498:5618..5858 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig1498 5619..5858 + |
| 1691679195.4147558-CDS-H-elongata_contig1498:5618..5858 | 1691679195.4147558-CDS-H-elongata_contig1498:5618..5858 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig1498 5619..5858 + |
| 1622929885.7322361-CDS-H-elongata_contig1498:6303..6538 | 1622929885.7322361-CDS-H-elongata_contig1498:6303..6538 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig1498 6304..6538 + |
| 1691679195.424899-CDS-H-elongata_contig1498:6303..6538 | 1691679195.424899-CDS-H-elongata_contig1498:6303..6538 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig1498 6304..6538 + |
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622929885.749029-UTR-H-elongata_contig1498:6538..6903 | 1622929885.749029-UTR-H-elongata_contig1498:6538..6903 | Himanthalia elongata Himel1 dioecious | UTR | H-elongata_contig1498 6539..6903 + |
| 1691679195.433935-UTR-H-elongata_contig1498:6538..6903 | 1691679195.433935-UTR-H-elongata_contig1498:6538..6903 | Himanthalia elongata Himel1 dioecious | UTR | H-elongata_contig1498 6539..6903 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig1498.3331.1 >prot_H-elongata_contig1498.3331.1 ID=prot_H-elongata_contig1498.3331.1|Name=mRNA_H-elongata_contig1498.3331.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=377bp
MGHEFLIVTSFGIALAVTSVYLFLAHVKRISAPNKADPAGTLVRIDLTAA LLEDQVARQRKSTAKRCRESLRTDAPAIEHPSVIKPTSIFCEITSSSTSL PSAKAVADHSFVWQERRKVGSDQNSPSRAQAISPSTSTCSTIMVPSPLWA EAFLKHAEAKRKELRDMVKRGEESAGWEAAWERLPPPRRRRVLVAVREEL VHAVSHYIGQDENLFDAMCPELRTSALEEEHQAITGFSRLMRRCLDGKLL EPRSRVFATVQHALSEVASAGNFPKDKRGPVRAFLATFRKLCAYSFCIGV LEAVVSGRADGSAGPTMGSVCAALVKACGSGVLLWAFFNGLSQMSASNIT GGDAAEGLAAGASVDGGSFLIEGKDL* back to topmRNA from alignment at H-elongata_contig1498:3349..6903+ Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-elongata_contig1498.3331.1 ID=mRNA_H-elongata_contig1498.3331.1|Name=mRNA_H-elongata_contig1498.3331.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3555bp|location=Sequence derived from alignment at H-elongata_contig1498:3349..6903+ (Himanthalia elongata Himel1 dioecious) ATGGGGCACGAGTTCCTGATAGTCACAAGCTTTGGCATTGCTTTGGCGGT
GACCTCGGTATATCTTTTCTTGGCCCACGTGAAGCGCATCTCGGCGCCGA
ACAAGGCCGATCCCGCGGGAACTTTGGTTAGGATTGATCTCACGGCCGCA
CTTTTGGAGGACCAAGTCGCCAGACAGAGGAAGTCTACCGCAAAGCGTTG
CAGGGAGTCTTTAAGGACTGATGCTCCCGCTATTGAGCATCCATCCGTGA
TAAAGCCGACATCTATTTTTTGCGAGATAACTTCGAGTTCAACGAGCCTA
CCCTCTGCGAAAGCTGTGGCCGATCATAGCTTTGTCTGGCAGGAGCGCCG
AAAGGTAGGTTCTGATCAAAACTCGCCCTCCAGGGCCCAAGGTGGACTGT
TCCACGCAGGCATGAGTCGCCAGGCCTTTGTCCCGTTTCTGTTATATGGT
CCAGGTAAACTGAATCTTTGAAGAAAATGTCTACCGATGGAGGGAACGGG
TTCATCACAAATTAGGCAGAGCTTGCTCAAGGTAGTGTTGAAGAAGGGGG
TTCAGACCGGTCCTTGCTATCGATTTCCAGACGCTCTAACCTTACAGGAT
ACCCCAGCTCGGTCGCAATCGACCCGGAGGACGTAATCAAAGCTCTATGC
GATTGCGATCAACCAGCAATTATGAGCGCCGGAAGCTATGTTTGCTGACG
GATATATATTCTTCTCATCCTGAACCCCCCAGAAAGAAACATAGACTGAA
CTGAAAAAAAAAGTACAAGAACCCCCGCCAGAGCCAAGCTAGAGCTGAGA
CCTCTTACGGTGCTAAGATGGCGTGGGTTTCTAAGAAGGCGTGGATCTTC
GGAGGGTTTGAATGTTTAATATTTTCTGACAAGAAAAACAGGGAGCCTTG
GCTATTCCACTACAAGCAGCGTCGCCTAAATCGTGAGTAATTCAGCTTCC
CAAGGATACGAGAAGGTCAAAATCATCTGTCCAGCCGCAACATCTAGCGC
AGCAGTAGCGTTCTCAGACTGTGTCACTATTCTTCCCTCCTGGCGGGTTT
GAGACACCTATTTCTCCATCTTACTCCCTTTTACCACTTTTTTTACTAAT
GTTCCTCCCATAACGCCAAGGTTTTCCAGCCCCCCGAAATACCTAAAGCT
TGGATTTTCCTCTCCCCACAAACGGTCCATTTTTTCTCCTCCCCTCCCCT
CCCCGCCTCGCCATCTCTTCCTTGCGTCTTGGCGTGCTCCGAATATGACC
CGCCGGGTATCTTTGCAACCGTCTCGATGCAATCGCAGCTGGTGGCGTGG
AAGACTTTGCTTTACAGAGGACGTGATGGTCCCGCGATCGCGCGTTCCGG
TGATACAATAGCCCACTCTCTCCCCCCTCCTCCCTCCCCCCTCCCCCTAC
TTTCCATTCCGCTAACAGCAGACGACGACAGCAATATCGCCATCGACATC
AACATGTAGCACGATTATGGTCCCGTCTCCGCTCTGGGCGGAGGCGTTCT
TGAAGCATGCCGAGGCAAAGCGGAAGGAGCTACGTGACATGGTTAAGCGT
GGGGAGGAGTCGGCTGGGTGGGAGGCCGCGTGGGAGCGCCTACCGCCCCC
GCGACGGCGCAGGGTGCTCGTGGCGGTAAGGGAGGAGCTCGTCCACGCGG
TGTCTCACTACATCGGACAAGACGAAAACCTCTTCGATGCCATGTGGTGA
GTACAGAGGACACAGCGTGCTGAGCGCCTCTTGACTGAGTAATTGATTAA
CGCGTAGAGCGTTTGATGTTAGTCAATTCATGATCGTGGACAGCAACGTA
GCATACATAAAATGGAGAAACAAAAAATGAAAACAGACAATGTCCGCTTT
TAATAGTGTAGTGTACACAAGATAAAATTAATTTTGTAGAGAAAGTGAAA
AAAAACACGACACCGAAGTGGCTGCGCAATGATTTCATCCTTCGTAGTGT
CTTAAACCACATTACTCCAAATGCATTATTGGCAGCGATTTACCGACGTT
GGGTGTCGTTCTAAGGGGCGCCCAAGTCAGCTATCTCAATGGGAATCGTG
GAGCAGCAAGCTATCATCGTACGAGCAAAACACTCGTTGCTAAACTGACC
TTCCAGTTTGCGGATATTTACTCCAGACAAACACCCATGCGAACACTGGA
AATGCGGTAGAAAATGATGACGAGTCCAACTGAGACGAAGAGTTGTTCCG
AATATCTCCTGCCTGCGATGTCCGATGTAATCTATTCCCTCTACTCTGGA
TATCGTTCCCATATCGCAAGCCCGGAGCTCCGAACTAGCGCGCTAGAGGA
GGAGCATCAAGCAATCACGGGCTTCTCACGCCTGATGAGGCGTTGCCTAG
ACGGGAAGCTGCTAGAGCCGAGATCACGCGTCTTCGCGACGGTACAACAC
GCGCTCTCGGAGGTGGCGTCGGCAGGAAACTTTCCGAAGGACAAACGAGG
GCCGGTTCGAGCCTTCTTAGCCACGTTCCGGAAGCTGTGCGCGTACTCCT
TCTGCATCGGGTGCGCGCCATTACCGGGATGATATATAATCTAGTATTAG
TATCTGCGATAGTACGGGAAGTTAAGGCCGGTATTTTTTTTAACCTTGCG
TGCGTACTGAACGACTTTGATTATTGTGCCGTACGCACAATTAGGGGAAT
GGTGGGACGGGCTGACACCGATCATATGATCGGTTCAAAATAACCCGCAT
GACTCTTAAACGATTTACACACGTACTCCGTTGGAGATGACTAGCGCGCA
TGTCTGGGTTCATCGTGTTTTGACGCTGCAAGTTATTCGTGGACATGAGA
GCACTAGAGACGGCGATGAAGGTCGCCAACCCACGGACACCGCCCTCTTT
GCCCAGCATCGCAAACAAATCCCTCCCCATATATATTTTTTACGCTTACC
CTAGCACTCTTTTTTTCCGATTGCACCCTGCGGCGCTTACTACAAACAAT
GCAAGGGTGCTGGAAGCTGTGGTGAGCGGGAGAGCGGACGGATCTGCGGG
GCCTACGATGGGCTCTGTCTGCGCGGCCCTGGTCAAGGCTTGCGGTTCGG
GGGTTCTACTGTGGGCGTTTTTCAACGGCTTAAGCCAGATGTCAGCGTCA
AATATTACGGGAGGGGATGCGGCAGAGGGACTTGCGGCGGGTGCGAGCGT
AGACGGGGGGTCTTTCTTAATAGAGGGGAAAGACCTGTGAAGAGCGCAGT
TTCAATCTGGAGAATGTCTTAGGAATAACTTCAAAAATGTTTTATTATGA
TTTCGGTGTTTTTTCCCGACCAGACCGGAGGCGTTTTCCCCACGATAGAG
ACGACCCCAATAGAAGCAGTCATATCTTCCTTGGTTTTCGCTGGTATCGA
GGACAGAGACGAACTCTATCACCTACGTTTTTGATATGCAACATGGCAAG
GGTTACTAGCCGGACTTTATGATGCCCATGTCCTGCAACCCCGCCCTTTG
CGAGGAGGACGTAATATAACATTTACATTGTTCAGGGAAGCGTCGAACAC
CATTAAACGAATACTTGAAGCGTGCGCCGCTGAGTGGGTATTACGTGCAT
CTCGC back to topCoding sequence (CDS) from alignment at H-elongata_contig1498:3349..6903+ >mRNA_H-elongata_contig1498.3331.1 ID=mRNA_H-elongata_contig1498.3331.1|Name=mRNA_H-elongata_contig1498.3331.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2262bp|location=Sequence derived from alignment at H-elongata_contig1498:3349..6903+ (Himanthalia elongata Himel1 dioecious) ATGGGGCACGAGTTCCTGATAGTCACAAGCTTTGGCATTGCTTTGGCGGT GACCTCGGTATATCTTTTCTTGGCCCACGTGAAGCGCATCTCGGCGCCGA ACAAGGCCGATCCCGCGGGAACTTTGGTTAGGATTGATCTCACGGCCGCA CTTTTGGAGGACCAAGTCGCCAGACAGAGGAAGTCTACCGCAAAGCGTTG CAGGGAGTCTTTAAGGACTGATGCTCCCGCTATTGAGCATCCATCCGTGA TAAAGCCGACATCTATTTTTTGCGAGATAACTTCGAGTTCAACGAGCCTA CCCTCTGCGAAAGCTGTGGCCGATCATAGCTTTGTCTGGCAGGAGCGCCG AAAGGTAGGTTCTGATCAAAACTCGCCCTCCAGGGCCCAAGATGGGGCAC GAGTTCCTGATAGTCACAAGCTTTGGCATTGCTTTGGCGGTGACCTCGGT ATATCTTTTCTTGGCCCACGTGAAGCGCATCTCGGCGCCGAACAAGGCCG ATCCCGCGGGAACTTTGGTTAGGATTGATCTCACGGCCGCACTTTTGGAG GACCAAGTCGCCAGACAGAGGAAGTCTACCGCAAAGCGTTGCAGGGAGTC TTTAAGGACTGATGCTCCCGCTATTGAGCATCCATCCGTGATAAAGCCGA CATCTATTTTTTGCGAGATAACTTCGAGTTCAACGAGCCTACCCTCTGCG AAAGCTGTGGCCGATCATAGCTTTGTCTGGCAGGAGCGCCGAAAGGTAGG TTCTGATCAAAACTCGCCCTCCAGGGCCCAAGCAATATCGCCATCGACAT CAACATGTAGCACGATTATGGTCCCGTCTCCGCTCTGGGCGGAGGCGTTC TTGAAGCATGCCGAGGCAAAGCGGAAGGAGCTACGTGACATGGTTAAGCG TGGGGAGGAGTCGGCTGGGTGGGAGGCCGCGTGGGAGCGCCTACCGCCCC CGCGACGGCGCAGGGTGCTCGTGGCGGTAAGGGAGGAGCTCGTCCACGCG GTGTCTCACTACATCGGACAAGACGAAAACCTCTTCGATGCCATGTGCAA TATCGCCATCGACATCAACATGTAGCACGATTATGGTCCCGTCTCCGCTC TGGGCGGAGGCGTTCTTGAAGCATGCCGAGGCAAAGCGGAAGGAGCTACG TGACATGGTTAAGCGTGGGGAGGAGTCGGCTGGGTGGGAGGCCGCGTGGG AGCGCCTACCGCCCCCGCGACGGCGCAGGGTGCTCGTGGCGGTAAGGGAG GAGCTCGTCCACGCGGTGTCTCACTACATCGGACAAGACGAAAACCTCTT CGATGCCATGTGCCCGGAGCTCCGAACTAGCGCGCTAGAGGAGGAGCATC AAGCAATCACGGGCTTCTCACGCCTGATGAGGCGTTGCCTAGACGGGAAG CTGCTAGAGCCGAGATCACGCGTCTTCGCGACGGTACAACACGCGCTCTC GGAGGTGGCGTCGGCAGGAAACTTTCCGAAGGACAAACGAGGGCCGGTTC GAGCCTTCTTAGCCACGTTCCGGAAGCTGTGCGCGTACTCCTTCTGCATC GGCCCGGAGCTCCGAACTAGCGCGCTAGAGGAGGAGCATCAAGCAATCAC GGGCTTCTCACGCCTGATGAGGCGTTGCCTAGACGGGAAGCTGCTAGAGC CGAGATCACGCGTCTTCGCGACGGTACAACACGCGCTCTCGGAGGTGGCG TCGGCAGGAAACTTTCCGAAGGACAAACGAGGGCCGGTTCGAGCCTTCTT AGCCACGTTCCGGAAGCTGTGCGCGTACTCCTTCTGCATCGGGGTGCTGG AAGCTGTGGTGAGCGGGAGAGCGGACGGATCTGCGGGGCCTACGATGGGC TCTGTCTGCGCGGCCCTGGTCAAGGCTTGCGGTTCGGGGGTTCTACTGTG GGCGTTTTTCAACGGCTTAAGCCAGATGTCAGCGTCAAATATTACGGGAG GGGATGCGGCAGAGGGACTTGCGGCGGGTGCGAGCGTAGACGGGGGGTCT TTCTTAATAGAGGGGAAAGACCTGTGAGGTGCTGGAAGCTGTGGTGAGCG GGAGAGCGGACGGATCTGCGGGGCCTACGATGGGCTCTGTCTGCGCGGCC CTGGTCAAGGCTTGCGGTTCGGGGGTTCTACTGTGGGCGTTTTTCAACGG CTTAAGCCAGATGTCAGCGTCAAATATTACGGGAGGGGATGCGGCAGAGG GACTTGCGGCGGGTGCGAGCGTAGACGGGGGGTCTTTCTTAATAGAGGGG AAAGACCTGTGA back to top
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