mRNA_H-elongata_contig149778.3330.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig149778.3330.1
Unique NamemRNA_H-elongata_contig149778.3330.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig149778.3330.1 vs. uniprot
Match: D7FWD1_ECTSI (Clathrin heavy chain n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FWD1_ECTSI)

HSP 1 Score: 237 bits (605), Expect = 5.000e-70
Identity = 117/129 (90.70%), Postives = 126/129 (97.67%), Query Frame = 1 
Query:    1 VADAILDNEMFTHYDRTHVAKLCENAGLYQRALEHYSMPADIKRLMAYAPAMNSEFIVSYFGTLSREISIEVMREMLGKNVRQNLQMVVQISTSYSDQIGAQSLIEMFEGFKLYEGLFYYLGAIVNNST 387
            VADAILDN+MFTHYDRTHVAKLCENAGLYQRALEHYS PADIKRLM+YAPAMNSEFIVSYFGTLSRE SI+VM+EMLGKN+RQNLQMVVQI+T+YSDQIGA+SL+EMFE FKLYEGLFYYLGAIVNNST
Sbjct:  585 VADAILDNDMFTHYDRTHVAKLCENAGLYQRALEHYSTPADIKRLMSYAPAMNSEFIVSYFGTLSRETSIDVMKEMLGKNMRQNLQMVVQIATAYSDQIGAESLMEMFESFKLYEGLFYYLGAIVNNST 713
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BLAST of mRNA_H-elongata_contig149778.3330.1 vs. uniprot
Match: A0A835YZH1_9STRA (Clathrin heavy chain n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZH1_9STRA)

HSP 1 Score: 204 bits (520), Expect = 1.400e-58
Identity = 99/128 (77.34%), Postives = 114/128 (89.06%), Query Frame = 1 
Query:    1 VADAILDNEMFTHYDRTHVAKLCENAGLYQRALEHYSMPADIKRLMAYAPAMNSEFIVSYFGTLSREISIEVMREMLGKNVRQNLQMVVQISTSYSDQIGAQSLIEMFEGFKLYEGLFYYLGAIVNNS 384
            VADAIL NEMF+HYDR H+A+LCENAGLYQRALEHY  PADIKRLMA+APAMN+EFIV++FG LSRE SIEVM+EMLGKN+RQNL +VVQI+T YSDQIG ++L+ + EGFK YEGLFYYLG IVN S
Sbjct:  600 VADAILANEMFSHYDRNHIARLCENAGLYQRALEHYQAPADIKRLMAFAPAMNAEFIVNFFGNLSRETSIEVMKEMLGKNMRQNLPIVVQIATKYSDQIGCENLVALLEGFKSYEGLFYYLGGIVNFS 727
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BLAST of mRNA_H-elongata_contig149778.3330.1 vs. uniprot
Match: A0A183J8Q7_9BILA (Uncharacterized protein n=1 Tax=Soboliphyme baturini TaxID=241478 RepID=A0A183J8Q7_9BILA)

HSP 1 Score: 155 bits (392), Expect = 1.090e-45
Identity = 77/128 (60.16%), Postives = 100/128 (78.12%), Query Frame = 1 
Query:    1 VADAILDNEMFTHYDRTHVAKLCENAGLYQRALEHYSMPADIKRLMAYAPAMNSEFIVSYFGTLSREISIEVMREMLGKNVRQNLQMVVQISTSYSDQIGAQSLIEMFEGFKLYEGLFYYLGAIVNNS 384
            VADAIL N MF HYDR HVA+LCENAGL QRALEHY+   DIKR + +   +  +++V+YFG+LS E S+E ++ ML  N+RQNLQ+VVQIST Y +Q+  Q+LI++FE FK +EGLFY+LG+IVN S
Sbjct:   42 VADAILGNNMFHHYDRAHVAQLCENAGLLQRALEHYTDLYDIKRAVVHTHLLKPDWLVNYFGSLSVEDSLECLKAMLQANIRQNLQVVVQISTKYHEQLTTQALIDLFESFKSFEGLFYFLGSIVNFS 169
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BLAST of mRNA_H-elongata_contig149778.3330.1 vs. uniprot
Match: A0A7L2WNE3_PANHA (CLH1 protein (Fragment) n=1 Tax=Pandion haliaetus TaxID=56262 RepID=A0A7L2WNE3_PANHA)

HSP 1 Score: 162 bits (410), Expect = 1.530e-45
Identity = 77/128 (60.16%), Postives = 102/128 (79.69%), Query Frame = 1 
Query:    1 VADAILDNEMFTHYDRTHVAKLCENAGLYQRALEHYSMPADIKRLMAYAPAMNSEFIVSYFGTLSREISIEVMREMLGKNVRQNLQMVVQISTSYSDQIGAQSLIEMFEGFKLYEGLFYYLGAIVNNS 384
            VADAIL N+MFTHYDR H+A+LCE AGL QRALEHY+   DIKR + +   +N E++V++FG+LS E S+E +R ML  N+RQNLQ+ VQ+++ Y +Q+G QSL+E+FE FK YEGLFY+LG+IVN S
Sbjct:  241 VADAILGNQMFTHYDRAHIAQLCEKAGLLQRALEHYTDLYDIKRAVVHTHLLNPEWLVNFFGSLSVEDSVECLRAMLSANIRQNLQLCVQVASKYHEQLGTQSLVELFESFKSYEGLFYFLGSIVNFS 368
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BLAST of mRNA_H-elongata_contig149778.3330.1 vs. uniprot
Match: UPI00063FB558 (clathrin heavy chain 2-like n=1 Tax=Propithecus coquereli TaxID=379532 RepID=UPI00063FB558)

HSP 1 Score: 159 bits (402), Expect = 1.650e-45
Identity = 74/128 (57.81%), Postives = 103/128 (80.47%), Query Frame = 1 
Query:    1 VADAILDNEMFTHYDRTHVAKLCENAGLYQRALEHYSMPADIKRLMAYAPAMNSEFIVSYFGTLSREISIEVMREMLGKNVRQNLQMVVQISTSYSDQIGAQSLIEMFEGFKLYEGLFYYLGAIVNNS 384
            VADA+L N+MFTHYDR H+A+LCE AGL Q+ALEHY+   DIKR + +A  +N E++VS+FG+LS E S+E +R ML  N+RQNLQ+ +Q+++ Y +Q+G QSL+++FE F+ YEGLFY+LG+IVN S
Sbjct:   71 VADAMLGNQMFTHYDRAHIAQLCEKAGLLQQALEHYTDLYDIKRTLVHAHLLNPEWLVSFFGSLSVEDSVECLRAMLSANIRQNLQLCMQVASKYHEQLGTQSLVQLFESFRSYEGLFYFLGSIVNFS 198
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BLAST of mRNA_H-elongata_contig149778.3330.1 vs. uniprot
Match: A0A851CWW8_TODME (CLH1 protein (Fragment) n=1 Tax=Todus mexicanus TaxID=135184 RepID=A0A851CWW8_TODME)

HSP 1 Score: 162 bits (409), Expect = 1.750e-45
Identity = 78/128 (60.94%), Postives = 102/128 (79.69%), Query Frame = 1 
Query:    1 VADAILDNEMFTHYDRTHVAKLCENAGLYQRALEHYSMPADIKRLMAYAPAMNSEFIVSYFGTLSREISIEVMREMLGKNVRQNLQMVVQISTSYSDQIGAQSLIEMFEGFKLYEGLFYYLGAIVNNS 384
            VADAIL N+MFTHYDR HVA+LCE AGL QRALEHY+   DIKR + +   +N E++V++FG+LS E S+E +R ML  N+RQNLQ+ VQ+++ Y +Q+G QSL+E+FE FK YEGLFY+LG+IVN S
Sbjct:  273 VADAILGNQMFTHYDRGHVAQLCEKAGLLQRALEHYTDLYDIKRAVVHTHLLNPEWLVNFFGSLSVEDSVECLRAMLSANIRQNLQLCVQVASKYHEQLGTQSLVELFESFKSYEGLFYFLGSIVNFS 400
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BLAST of mRNA_H-elongata_contig149778.3330.1 vs. uniprot
Match: A0A1Y3NT83_PIRSE (Clathrin heavy chain n=5 Tax=Neocallimastigaceae TaxID=29007 RepID=A0A1Y3NT83_PIRSE)

HSP 1 Score: 167 bits (422), Expect = 2.200e-45
Identity = 79/128 (61.72%), Postives = 105/128 (82.03%), Query Frame = 1 
Query:    1 VADAILDNEMFTHYDRTHVAKLCENAGLYQRALEHYSMPADIKRLMAYAPAMNSEFIVSYFGTLSREISIEVMREMLGKNVRQNLQMVVQISTSYSDQIGAQSLIEMFEGFKLYEGLFYYLGAIVNNS 384
            VADAIL N MFT YD+  +AKLCENAGLYQRALEHY+   DIKR + +   +NS++++++FG LS E S+E +RE+L  N+RQNLQ+VVQI+T YSDQ+G+ +LIEMFE FK +EGL+YYLG++VN+S
Sbjct:  595 VADAILGNNMFTRYDKEKIAKLCENAGLYQRALEHYTDINDIKRNIVHVSNLNSDWVINFFGHLSPEQSLECLRELLNNNIRQNLQIVVQIATKYSDQLGSSNLIEMFESFKTFEGLYYYLGSVVNSS 722
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BLAST of mRNA_H-elongata_contig149778.3330.1 vs. uniprot
Match: A0A316YX78_9BASI (Clathrin heavy chain n=2 Tax=Exobasidiales TaxID=5404 RepID=A0A316YX78_9BASI)

HSP 1 Score: 166 bits (421), Expect = 3.010e-45
Identity = 82/129 (63.57%), Postives = 103/129 (79.84%), Query Frame = 1 
Query:    1 VADAILDNEMFTHYDRTHVAKLCENAGLYQRALEHYSMPADIKRLMAYAPAMNSEFIVSYFGTLSREISIEVMREMLGKNVRQNLQMVVQISTSYSDQIGAQSLIEMFEGFKLYEGLFYYLGAIVNNST 387
            VADAIL NEMFTHYDR  +A LCE AGL QRALEHY   ADIKR++ ++  +NSE++V+YFGTL+ E S++ M+EML  N+RQNL +VVQI+T YSD +G   LIEMFE FK +EGL+YYLG++VN ST
Sbjct:  596 VADAILGNEMFTHYDRPRIANLCEKAGLLQRALEHYEDQADIKRVVVHSNLLNSEWLVNYFGTLTVEQSLDSMKEMLKVNIRQNLSVVVQIATKYSDLLGPVKLIEMFESFKSFEGLYYYLGSVVNLST 724
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BLAST of mRNA_H-elongata_contig149778.3330.1 vs. uniprot
Match: A0A139ANL6_GONPJ (Clathrin heavy chain n=1 Tax=Gonapodya prolifera (strain JEL478) TaxID=1344416 RepID=A0A139ANL6_GONPJ)

HSP 1 Score: 166 bits (419), Expect = 5.590e-45
Identity = 79/129 (61.24%), Postives = 105/129 (81.40%), Query Frame = 1 
Query:    1 VADAILDNEMFTHYDRTHVAKLCENAGLYQRALEHYSMPADIKRLMAYAPAMNSEFIVSYFGTLSREISIEVMREMLGKNVRQNLQMVVQISTSYSDQIGAQSLIEMFEGFKLYEGLFYYLGAIVNNST 387
            VADAIL N+MFTHYDR H+A+LCE AGL+QRALEHY+   DIKR + +   +N E+IV++FG LS + S+E ++EML  N+RQNLQ+VVQI+T YS+Q+G + LI+MFE FK +EGL+YYLG++VN ST
Sbjct:  595 VADAILGNQMFTHYDRAHIAQLCEKAGLFQRALEHYTDIYDIKRTIVHTQLLNPEWIVNFFGHLSVDQSMECLKEMLNSNMRQNLQIVVQIATKYSEQLGPKGLIQMFESFKSFEGLYYYLGSVVNFST 723
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BLAST of mRNA_H-elongata_contig149778.3330.1 vs. uniprot
Match: A0A482RRE1_9ARCH (Uncharacterized protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RRE1_9ARCH)

HSP 1 Score: 160 bits (406), Expect = 6.510e-45
Identity = 76/129 (58.91%), Postives = 108/129 (83.72%), Query Frame = 1 
Query:    1 VADAILDNEMFTHYDRTHVAKLCENAGLYQRALEHYSMPADIKRLMAYAPA-MNSEFIVSYFGTLSREISIEVMREMLGKNVRQNLQMVVQISTSYSDQIGAQSLIEMFEGFKLYEGLFYYLGAIVNNS 384
            VADAIL NEMFTHYDR +V +LCE  GL+QRALEHY+  ADIKR++  + A +N E++VS+FG++S+E S+E+++++L +N+RQNL +VVQ++T YS+ +G ++LI++FE FK YEGLF+YLGAIVN S
Sbjct:  191 VADAILGNEMFTHYDRMYVGRLCEQYGLFQRALEHYTDIADIKRVLQNSSAALNPEYLVSFFGSISKEGSLEILKDLLARNIRQNLNIVVQVATKYSEPLGPENLIKLFEDFKTYEGLFFYLGAIVNFS 319
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig149778.3330.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FWD1_ECTSI5.000e-7090.70Clathrin heavy chain n=2 Tax=Ectocarpus TaxID=2879... [more]
A0A835YZH1_9STRA1.400e-5877.34Clathrin heavy chain n=1 Tax=Tribonema minus TaxID... [more]
A0A183J8Q7_9BILA1.090e-4560.16Uncharacterized protein n=1 Tax=Soboliphyme baturi... [more]
A0A7L2WNE3_PANHA1.530e-4560.16CLH1 protein (Fragment) n=1 Tax=Pandion haliaetus ... [more]
UPI00063FB5581.650e-4557.81clathrin heavy chain 2-like n=1 Tax=Propithecus co... [more]
A0A851CWW8_TODME1.750e-4560.94CLH1 protein (Fragment) n=1 Tax=Todus mexicanus Ta... [more]
A0A1Y3NT83_PIRSE2.200e-4561.72Clathrin heavy chain n=5 Tax=Neocallimastigaceae T... [more]
A0A316YX78_9BASI3.010e-4563.57Clathrin heavy chain n=2 Tax=Exobasidiales TaxID=5... [more]
A0A139ANL6_GONPJ5.590e-4561.24Clathrin heavy chain n=1 Tax=Gonapodya prolifera (... [more]
A0A482RRE1_9ARCH6.510e-4558.91Uncharacterized protein (Fragment) n=1 Tax=archaeo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig149778contigH-elongata_contig149778:419..1567 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score222.6
Seed ortholog evalue9.7e-56
Seed eggNOG ortholog2880.D7FWD1
Preferred nameCLTC
KEGG koko:K04646
KEGG Pathwayko04142,ko04144,ko04721,ko04961,ko05016,ko05100,map04142,map04144,map04721,map04961,map05016,map05100
GOsGO:0000003,GO:0000041,GO:0000139,GO:0000226,GO:0000278,GO:0000280,GO:0000281,GO:0000323,GO:0000578,GO:0000910,GO:0000912,GO:0000915,GO:0001505,GO:0001654,GO:0001745,GO:0002020,GO:0002376,GO:0002478,GO:0002495,GO:0002504,GO:0003002,GO:0003006,GO:0003674,GO:0003676,GO:0003723,GO:0003725,GO:0005102,GO:0005198,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005694,GO:0005737,GO:0005739,GO:0005764,GO:0005765,GO:0005768,GO:0005770,GO:0005773,GO:0005774,GO:0005794,GO:0005802,GO:0005819,GO:0005829,GO:0005856,GO:0005874,GO:0005876,GO:0005886,GO:0005905,GO:0005911,GO:0005938,GO:0006109,GO:0006403,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0006826,GO:0006836,GO:0006886,GO:0006887,GO:0006892,GO:0006895,GO:0006897,GO:0006898,GO:0006907,GO:0006950,GO:0006970,GO:0006996,GO:0007010,GO:0007017,GO:0007028,GO:0007030,GO:0007033,GO:0007034,GO:0007041,GO:0007049,GO:0007051,GO:0007052,GO:0007154,GO:0007163,GO:0007165,GO:0007166,GO:0007267,GO:0007268,GO:0007269,GO:0007275,GO:0007276,GO:0007281,GO:0007283,GO:0007286,GO:0007291,GO:0007292,GO:0007308,GO:0007309,GO:0007314,GO:0007315,GO:0007316,GO:0007346,GO:0007349,GO:0007350,GO:0007351,GO:0007389,GO:0007423,GO:0007424,GO:0007568,GO:0007591,GO:0007594,GO:0008022,GO:0008092,GO:0008103,GO:0008104,GO:0008150,GO:0008152,GO:0008219,GO:0008298,GO:0008340,GO:0008358,GO:0008593,GO:0008595,GO:0009056,GO:0009057,GO:0009267,GO:0009506,GO:0009507,GO:0009536,GO:0009605,GO:0009628,GO:0009653,GO:0009790,GO:0009792,GO:0009798,GO:0009880,GO:0009887,GO:0009889,GO:0009890,GO:0009892,GO:0009898,GO:0009948,GO:0009952,GO:0009966,GO:0009967,GO:0009987,GO:0009991,GO:0009994,GO:0010008,GO:0010118,GO:0010256,GO:0010259,GO:0010556,GO:0010558,GO:0010564,GO:0010605,GO:0010623,GO:0010646,GO:0010647,GO:0010827,GO:0010828,GO:0012501,GO:0012505,GO:0012506,GO:0015031,GO:0015629,GO:0015630,GO:0015682,GO:0015833,GO:0015931,GO:0016020,GO:0016043,GO:0016050,GO:0016055,GO:0016079,GO:0016192,GO:0016197,GO:0016324,GO:0016325,GO:0016482,GO:0017156,GO:0019094,GO:0019222,GO:0019538,GO:0019882,GO:0019884,GO:0019886,GO:0019899,GO:0019900,GO:0019901,GO:0019904,GO:0019953,GO:0021700,GO:0022402,GO:0022412,GO:0022414,GO:0022603,GO:0022607,GO:0022608,GO:0022609,GO:0022610,GO:0023051,GO:0023052,GO:0023056,GO:0023061,GO:0030001,GO:0030029,GO:0030036,GO:0030054,GO:0030100,GO:0030117,GO:0030118,GO:0030120,GO:0030125,GO:0030135,GO:0030136,GO:0030139,GO:0030141,GO:0030154,GO:0030163,GO:0030198,GO:0030276,GO:0030315,GO:0030424,GO:0030435,GO:0030479,GO:0030506,GO:0030587,GO:0030659,GO:0030662,GO:0030665,GO:0030666,GO:0030669,GO:0030863,GO:0030864,GO:0030865,GO:0030866,GO:0030951,GO:0030952,GO:0031032,GO:0031072,GO:0031090,GO:0031152,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031410,GO:0031523,GO:0031623,GO:0031667,GO:0031668,GO:0031669,GO:0031982,GO:0031984,GO:0032051,GO:0032501,GO:0032502,GO:0032504,GO:0032506,GO:0032588,GO:0032799,GO:0032801,GO:0032802,GO:0032879,GO:0032880,GO:0032881,GO:0032885,GO:0032886,GO:0032940,GO:0032991,GO:0033036,GO:0033043,GO:0033218,GO:0033227,GO:0033267,GO:0033363,GO:0033554,GO:0033572,GO:0034381,GO:0034383,GO:0034613,GO:0034622,GO:0034762,GO:0034764,GO:0035002,GO:0035150,GO:0035151,GO:0035152,GO:0035159,GO:0035282,GO:0035567,GO:0036019,GO:0036020,GO:0040008,GO:0042044,GO:0042045,GO:0042147,GO:0042277,GO:0042303,GO:0042383,GO:0042594,GO:0042802,GO:0042886,GO:0042995,GO:0043005,GO:0043062,GO:0043112,GO:0043170,GO:0043195,GO:0043209,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043255,GO:0043679,GO:0043933,GO:0043934,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044306,GO:0044422,GO:0044424,GO:0044425,GO:0044427,GO:0044430,GO:0044431,GO:0044433,GO:0044437,GO:0044440,GO:0044444,GO:0044446,GO:0044448,GO:0044456,GO:0044459,GO:0044463,GO:0044464,GO:0044703,GO:0044764,GO:0044837,GO:0045055,GO:0045056,GO:0045176,GO:0045177,GO:0045184,GO:0045202,GO:0045334,GO:0045451,GO:0045747,GO:0045807,GO:0045912,GO:0046324,GO:0046326,GO:0046666,GO:0046667,GO:0046903,GO:0046907,GO:0048002,GO:0048193,GO:0048232,GO:0048259,GO:0048260,GO:0048268,GO:0048285,GO:0048468,GO:0048469,GO:0048471,GO:0048475,GO:0048477,GO:0048489,GO:0048513,GO:0048515,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048592,GO:0048599,GO:0048609,GO:0048646,GO:0048731,GO:0048749,GO:0048856,GO:0048869,GO:0050657,GO:0050658,GO:0050750,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051049,GO:0051050,GO:0051128,GO:0051130,GO:0051171,GO:0051172,GO:0051179,GO:0051225,GO:0051234,GO:0051236,GO:0051239,GO:0051301,GO:0051493,GO:0051640,GO:0051641,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0051703,GO:0051704,GO:0051716,GO:0051726,GO:0055044,GO:0060071,GO:0060236,GO:0060255,GO:0060341,GO:0060541,GO:0060627,GO:0060810,GO:0060811,GO:0061024,GO:0061640,GO:0061645,GO:0062012,GO:0062014,GO:0065003,GO:0065007,GO:0065008,GO:0070325,GO:0070507,GO:0070633,GO:0070727,GO:0070925,GO:0071439,GO:0071496,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071944,GO:0072512,GO:0072583,GO:0072686,GO:0080090,GO:0090066,GO:0090175,GO:0090224,GO:0090307,GO:0090596,GO:0090702,GO:0097006,GO:0097159,GO:0097443,GO:0097458,GO:0097479,GO:0097480,GO:0097708,GO:0097718,GO:0098552,GO:0098562,GO:0098588,GO:0098590,GO:0098630,GO:0098657,GO:0098743,GO:0098791,GO:0098793,GO:0098796,GO:0098805,GO:0098852,GO:0098916,GO:0099003,GO:0099080,GO:0099081,GO:0099120,GO:0099503,GO:0099504,GO:0099512,GO:0099513,GO:0099536,GO:0099537,GO:0099568,GO:0099643,GO:0120025,GO:0120038,GO:0140014,GO:0150034,GO:0198738,GO:1900125,GO:1900126,GO:1901363,GO:1901564,GO:1901565,GO:1901575,GO:1902850,GO:1903047,GO:1903076,GO:1903077,GO:1903827,GO:1903828,GO:1904375,GO:1904376,GO:1905114,GO:1905330,GO:1905475,GO:1905476,GO:1990381,GO:1990498,GO:1990763,GO:2000026,GO:2000027,GO:2000369,GO:2000370
EggNOG free text desc.clathrin light chain binding
EggNOG OGsKOG0985@1,KOG0985@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131,ko04147
Hectar predicted targeting categoryother localisation
Exons2
Model size387
Cds size360
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig149778.3330.1prot_H-elongata_contig149778.3330.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig149778 419..1540 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929885.6096146-CDS-H-elongata_contig149778:418..6951622929885.6096146-CDS-H-elongata_contig149778:418..695Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig149778 419..695 -
1691679195.3614519-CDS-H-elongata_contig149778:418..6951691679195.3614519-CDS-H-elongata_contig149778:418..695Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig149778 419..695 -
1622929885.628783-CDS-H-elongata_contig149778:1457..15401622929885.628783-CDS-H-elongata_contig149778:1457..1540Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig149778 1458..1540 -
1691679195.3724325-CDS-H-elongata_contig149778:1457..15401691679195.3724325-CDS-H-elongata_contig149778:1457..1540Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig149778 1458..1540 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929885.641808-UTR-H-elongata_contig149778:1540..15671622929885.641808-UTR-H-elongata_contig149778:1540..1567Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig149778 1541..1567 -
1691679195.3803244-UTR-H-elongata_contig149778:1540..15671691679195.3803244-UTR-H-elongata_contig149778:1540..1567Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig149778 1541..1567 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig149778.3330.1

>prot_H-elongata_contig149778.3330.1 ID=prot_H-elongata_contig149778.3330.1|Name=mRNA_H-elongata_contig149778.3330.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=120bp
MFTHYDRTHVAKLCENAGLYQRALEHYSMPADIKRLMAYAPAMNSEFIVS
YFGTLSREISIEVMREMLGKNVRQNLQMVVQISTSYSDQIGAQSLIEMFE
GFKLYEGLFYYLGAIVNNST
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mRNA from alignment at H-elongata_contig149778:419..1567-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig149778.3330.1 ID=mRNA_H-elongata_contig149778.3330.1|Name=mRNA_H-elongata_contig149778.3330.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1149bp|location=Sequence derived from alignment at H-elongata_contig149778:419..1567- (Himanthalia elongata Himel1 dioecious)
GTGGCAGACGCGATTCTGGATAACGAGATGTTCACGCACTACGACCGCAC
TCACGTCGCCAAGCTGTGCGAGAACGCAGGGCTTTACCAGCGCGCCCTTG
AGCACTACAGGTACTTTAATTTTAATGTAATATATACTGTAATATAATAT
TATGTATATATATATATATAACACTGTCGACTAAATTATCCGGTATTTGT
GTTAAAATATCGTGTAAAGAGTTAAGAAACGCCTCCTTCACGAACACACT
CGTCCATAATGTCGATTTTATAGCTTAAAAGAGGCGGGGGAGGTGCCACT
TTCTGTTCCCCGGCGCGGGATCTTGTATCGTGTCGACAAACATGGTTGCT
TTATTTTGTTTCGACGCCGCATGCCGTGGTTTGATTCAAGTTGCATGTAG
TAATCAAGATAAATATTGCGGCGGGATGTTCTTTTTGTTCTTCCCCTCTC
GTGGAGGCGTGTTTTATGTAGAGTTTTGTATTATCTATAAGGCCGGGTCT
TATCGGAATACAAAAATTAAAATTTCCAGCCGATTTTAATCTAGCCTTCG
TCCAATCAGAGCCCGATTTTAATTTAAATCGGCTGGAATATAAGCTTTTG
TGATCCCGTTAATACCCACCTTCACATACTTAACACGTGTATGGATTTTG
CTCGTGACGTTCATTTTTCAGAGGTCGAACGTTCTTTTTTTCCGTCTAAA
TATTCTTTCGTAAAAAAAACTTGACTATTATATAAAAAAATTATATATAG
ATATTATTGGTCAGCGGCGTTGATAAAAAAAAACAAAACAAGAAACTCTT
CTTCCTTTTTTGTTTTCGTTTAAATAGAAAAAATGTTTTTATTTTGTAAA
ACTCTTGTGCTGTCTCTCTCAGCATGCCGGCGGACATCAAGCGCCTGATG
GCTTACGCTCCAGCGATGAACTCGGAGTTCATCGTGTCCTATTTTGGCAC
CCTGTCCCGCGAGATCTCGATCGAGGTTATGAGGGAAATGCTCGGGAAAA
ACGTTAGGCAGAACCTGCAGATGGTTGTGCAGATCTCCACCAGCTACTCG
GACCAGATCGGAGCGCAGTCCCTGATCGAAATGTTCGAGGGCTTCAAGCT
GTACGAGGGGTTGTTCTATTACCTTGGCGCCATTGTGAACAACTCGACG
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Coding sequence (CDS) from alignment at H-elongata_contig149778:419..1567-

>mRNA_H-elongata_contig149778.3330.1 ID=mRNA_H-elongata_contig149778.3330.1|Name=mRNA_H-elongata_contig149778.3330.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=720bp|location=Sequence derived from alignment at H-elongata_contig149778:419..1567- (Himanthalia elongata Himel1 dioecious)
ATGTTCACGCACTACGACCGCACTCACGTCGCCAAGCTGTGCGAGAACGC
AGGGCTTTACCAGCGCGCCCTTGAGCACTACAGATGTTCACGCACTACGA
CCGCACTCACGTCGCCAAGCTGTGCGAGAACGCAGGGCTTTACCAGCGCG
CCCTTGAGCACTACAGCATGCCGGCGGACATCAAGCGCCTGATGGCTTAC
GCTCCAGCGATGAACTCGGAGTTCATCGTGTCCTATTTTGGCACCCTGTC
CCGCGAGATCTCGATCGAGGTTATGAGGGAAATGCTCGGGAAAAACGTTA
GGCAGAACCTGCAGATGGTTGTGCAGATCTCCACCAGCTACTCGGACCAG
ATCGGAGCGCAGTCCCTGATCGAAATGTTCGAGGGCTTCAAGCTGTACGA
GGGGTTGTTCTATTACCTTGGCGCCATTGTGAACAACTCGACGCATGCCG
GCGGACATCAAGCGCCTGATGGCTTACGCTCCAGCGATGAACTCGGAGTT
CATCGTGTCCTATTTTGGCACCCTGTCCCGCGAGATCTCGATCGAGGTTA
TGAGGGAAATGCTCGGGAAAAACGTTAGGCAGAACCTGCAGATGGTTGTG
CAGATCTCCACCAGCTACTCGGACCAGATCGGAGCGCAGTCCCTGATCGA
AATGTTCGAGGGCTTCAAGCTGTACGAGGGGTTGTTCTATTACCTTGGCG
CCATTGTGAACAACTCGACG
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