mRNA_H-elongata_contig14973.3326.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig14973.3326.1
Unique NamemRNA_H-elongata_contig14973.3326.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig14973.3326.1 vs. uniprot
Match: A0A6H5JUA4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUA4_9PHAE)

HSP 1 Score: 267 bits (683), Expect = 9.830e-83
Identity = 139/251 (55.38%), Postives = 170/251 (67.73%), Query Frame = 2
Query:    5 LSLYRGLLSPVLGHGTLKGFGFTAYAMAGSFILRRRGADEGAHMTKLEMACAGSFAGIANSPMRQVVERVKSVMQVQRAGKYISPYSWSGACAVDLVRREGFGMGLFRGNTATAVREAVQLAIYYPTVSSVFPNPVVFVSNDLASAGHVVYFISEDRARHSGVPEPLLQMLAGGLAGCAMWLPPVYTLDVLKTRMQTAAPGVYKNMWDCAAKTWRTEGLQMFYRGLGPSFLRAFPMHGLVFVGYEATVSIL 757
            LSLYRGLLSPV+G+G +    F++Y  AG F+LRRR A     +T  E   AG++AG+ N+PMRQV ERVK VMQV++  K  SPYSWSGAC VDLVRREG  MGL RG  AT +RE +Q  IYYP+           ++ D        Y +  DR   + VPEP+L  LAGGLAGC MWLPP Y LDV+KTRMQTA PGVY+ + DC  KT R EG+ + +RGLG + LRAFPMHGLVF+GYE T+ +L
Sbjct:   57 LSLYRGLLSPVVGYGAMFAVSFSSYGYAGRFLLRRREAKATDELTLPEKGIAGAWAGVMNAPMRQVFERVKGVMQVRQGKKLQSPYSWSGACVVDLVRREGVAMGLCRGMGATMLREPLQFGIYYPSYE---------IAKD--------YLLPPDRTS-TAVPEPMLLALAGGLAGCVMWLPPTYCLDVIKTRMQTAEPGVYRGVRDCLMKTLRAEGMPVLFRGLGAAMLRAFPMHGLVFLGYETTIDLL 289          
BLAST of mRNA_H-elongata_contig14973.3326.1 vs. uniprot
Match: D7FLY9_ECTSI (Carnitine/acylcarnitine carrier protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLY9_ECTSI)

HSP 1 Score: 246 bits (628), Expect = 3.030e-75
Identity = 133/257 (51.75%), Postives = 162/257 (63.04%), Query Frame = 2
Query:    2 VLSLYRGLLSPVLGHGTLKGFGFTAYAMAGSFILRRRGADE----GAHMTKLEMACAGSFAGIANSPMRQVVERVKSVMQVQRAGKYISPYSWSGACAVDLVRREGFGMGLFRGNTATAVREAVQLAIYYPTVSSVFPNPVVFVSNDLASAGHVVYFISEDRARHSGVPEPLLQMLAGGLAGCAMWLPPVYTLDVLKTRMQTAAPGVYKNMWDCAAKTWRTEGLQMFYRGLGPSFLRAFPMHGLVFVGYEATVSILT 760
            ++S YRGLLSPV G+G +    F++Y MA  F+ R             +   E + AG FAG  NSP R V +RVK+VMQV+      +PYSWSGACA DLVRREG   GLFRG  +T +RE +Q AIYYP+           V+ DL +            +  S VPEP LQMLAGG+AGCA WLPPVY LDV+KTR+Q+A PGVY   WDC  KT R+EG  + +RGLG S LRAFPMHGLVFVGYE T+ +LT
Sbjct:    7 LMSWYRGLLSPVAGYGAMFAVSFSSYGMASRFLQRXXXXXXXXXXSGEVFLWEKSAAGFFAGAMNSPFRTVFDRVKTVMQVRVGNGRAAPYSWSGACAADLVRREGVMSGLFRGIESTMLREMLQCAIYYPSYE---------VTKDLLAR--------RSTSGKSSVPEPALQMLAGGIAGCATWLPPVYCLDVIKTRLQSAEPGVYGGTWDCLRKTVRSEGTPVLFRGLGLSMLRAFPMHGLVFVGYETTIGLLT 246          
BLAST of mRNA_H-elongata_contig14973.3326.1 vs. uniprot
Match: D7FM07_ECTSI (Carnitine/acylcarnitine carrier protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM07_ECTSI)

HSP 1 Score: 237 bits (605), Expect = 4.060e-72
Identity = 123/221 (55.66%), Postives = 150/221 (67.87%), Query Frame = 2
Query:   95 FILRRRGADEGAHMTKLEMACAGSFAGIANSPMRQVVERVKSVMQVQRAGKYISPYSWSGACAVDLVRREGFGMGLFRGNTATAVREAVQLAIYYPTVSSVFPNPVVFVSNDLASAGHVVYFISEDRARHSGVPEPLLQMLAGGLAGCAMWLPPVYTLDVLKTRMQTAAPGVYKNMWDCAAKTWRTEGLQMFYRGLGPSFLRAFPMHGLVFVGYEATVSIL 757
            F+LRRR A     +T  E   AG++AG+ N+PMRQV ERVK VMQV++  K  SPYSWSGAC VDLVRREG  MGL RG  AT +RE +Q  IYYP+           ++ D        YF+  DR   + VPEP+L  LAGGLAGC MWLPP+Y LDV+KTRMQTA PGVY+ + DC  KT R EG+ + +RGLG + LRAFPMHGLVF+GYE T+ +L
Sbjct:   12 FLLRRREAKATDKLTLPEKGIAGAWAGVMNAPMRQVFERVKGVMQVRQGKKLQSPYSWSGACVVDLVRREGIAMGLCRGMGATMLREPLQFGIYYPSYE---------IAKD--------YFLPPDRTS-TAVPEPILLALAGGLAGCVMWLPPIYCLDVIKTRMQTAEPGVYRGVRDCLMKTLRAEGMPVLFRGLGAAMLRAFPMHGLVFLGYETTIDLL 214          
BLAST of mRNA_H-elongata_contig14973.3326.1 vs. uniprot
Match: A0A836C8G7_9STRA (Carnitine/acylcarnitine carrier protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8G7_9STRA)

HSP 1 Score: 217 bits (552), Expect = 4.710e-64
Identity = 119/252 (47.22%), Postives = 150/252 (59.52%), Query Frame = 2
Query:    2 VLSLYRGLLSPVLGHGTLKGFGFTAYAMAGSFILRRRGADEGAHMTKLEMACAGSFAGIANSPMRQVVERVKSVMQVQRAGKYISPYSWSGACAVDLVRREGFGMGLFRGNTATAVREAVQLAIYYPTVSSVFPNPVVFVSNDLASAGHVVYFISEDRARHSGVPEPLLQMLAGGLAGCAMWLPPVYTLDVLKTRMQTAAPGVYKNMWDCAAKTWRTEGLQMFYRGLGPSFLRAFPMHGLVFVGYEATVSIL 757
            V SLYRGL SPVLG+G L    F+A   A  ++  R G    A  +  EM  AG++AG   +P RQV ERVK VMQV+      +PYSWSGAC VDLVR EG  MGLFRG  +  +RE  Q A+YYP          V     L + GH+                P+  +LAGG+AG   WLPP+Y +DVLKT++QTAAPG YK++ D A KT  TEG +  +RGLGPS +RAFP+H  +F GYE T++ L
Sbjct:   18 VKSLYRGLASPVLGYGVLFAMSFSANGQALRYLRNRDGRAANAPASVAEMTLAGAWAGAVQAPARQVFERVKGVMQVRNGAGGKAPYSWSGACLVDLVRTEGVQMGLFRGMGSQFIREVPQFALYYPAYD-------VAKRAILPADGHI---------------SPIHMLLAGGIAGTVQWLPPIYNIDVLKTKIQTAAPGTYKSIADAARKTVATEGTKGLFRGLGPSLVRAFPLHATIFAGYELTMAHL 247          
BLAST of mRNA_H-elongata_contig14973.3326.1 vs. uniprot
Match: W7TE76_9STRA (Mitochondrial carrier family n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TE76_9STRA)

HSP 1 Score: 211 bits (536), Expect = 2.200e-61
Identity = 116/256 (45.31%), Postives = 157/256 (61.33%), Query Frame = 2
Query:    2 VLSLYRGLLSPVLGHGTLKGFGFTAYAMAGSFILRRRGADEGAHMTKLEMACAGSFAGIANSPMRQVVERVKSVMQVQRA--GKYISPYSWSGACAVDLVRREGFGMGLFRGNTATAVREAVQLAIYYPTVSSVFP--NPVVFVSNDLASAGHVVYFISEDRARHSGVPEPLLQMLAGGLAGCAMWLPPVYTLDVLKTRMQTAAPGVYKNMWDCAAKTWRTEGLQMFYRGLGPSFLRAFPMHGLVFVGYEATVSIL 757
            + SLYRGLLSP  G G      F  Y     F   R+G D    +T  EM  +G++AG+  SP RQ+ ER+KSVMQV++A  G    PY WSG C V LVR+EG   GLFRG  ATA+RE  Q A+YYP           ++  SN   S+ +    +    +  + +P P L +LAGG+AG   WLPP Y LDVLK+RMQ+A PGVY N+WDCA K+++ EG+ +F+RGL  + +RAFP++  +F+GYE T++ L
Sbjct:    7 ISSLYRGLLSPQAGFGVTFAISFAGYGQGTRFF--RKG-DNKRELTLGEMTASGAWAGLLQSPARQIFERIKSVMQVRKAAGGADKPPYRWSGECLVQLVRKEGLYNGLFRGLDATALREVPQFAVYYPLYEMNVRALQKMMAASNASGSSXNESNIVHRKPSSSTPLP-PHLLLLAGGVAGTVQWLPPFYCLDVLKSRMQSALPGVYDNVWDCAKKSYQQEGIGVFFRGLPVALIRAFPLNACIFLGYETTLAAL 258          
BLAST of mRNA_H-elongata_contig14973.3326.1 vs. uniprot
Match: A0A4D9D591_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D591_9STRA)

HSP 1 Score: 162 bits (410), Expect = 7.530e-44
Identity = 84/182 (46.15%), Postives = 118/182 (64.84%), Query Frame = 2
Query:  224 MQVQRAGKYI--SPYSWSGACAVDLVRREGFGMGLFRGNTATAVREAVQLAIYYPTVSSVFP--NPVVFVSNDLASAGHVVYFISEDRARHSGVPEPLLQMLAGGLAGCAMWLPPVYTLDVLKTRMQTAAPGVYKNMWDCAAKTWRTEGLQMFYRGLGPSFLRAFPMHGLVFVGYEATVSIL 757
            MQV++A   +  +PY WSG C V LVR+EG   GLFRG  ATA+RE  Q A+YYP           ++  SN   S+ H    ++   +  + +P P L +LAGG+AG   WLPP Y LDVLK+RMQ+A PGVY N+WDCA K+++ EG+ +F+RGL  + +RAFP++  +F+GYE T++ L
Sbjct:    1 MQVRKAAGGVDKAPYRWSGECLVQLVRKEGLYNGLFRGLDATALREVPQFAVYYPLYEMNVRALQKMMAASNASGSSSHEKNRVNRKPSSSTPLP-PHLLLLAGGVAGTVQWLPPFYCLDVLKSRMQSALPGVYDNVWDCAKKSYQQEGIGVFFRGLPVALIRAFPLNACIFLGYETTLAAL 181          
BLAST of mRNA_H-elongata_contig14973.3326.1 vs. uniprot
Match: K8Z8A3_NANGC (Mitochondrial carrier family n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8Z8A3_NANGC)

HSP 1 Score: 164 bits (414), Expect = 2.830e-43
Identity = 98/254 (38.58%), Postives = 139/254 (54.72%), Query Frame = 2
Query:    2 VLSLYRGLLSPVLGHGTLKGFGFTAYAMAGSFILRRRGADEGAHMTKLEMACAGSFAGIANSPMRQVVERVKSVMQVQRA--GKYISPYSWSGACAVDLVRREGFGMGLFRGNTATAVREAVQLAIYYPTVSSVFPNPVVFVSNDLASAGHVVYFISEDRARHSGVPEPLLQMLAGGLAGCAMWLPPVYTLDVLKTRMQTAAPGVYKNMWDCAAKTWRTEGLQMFYRGLGPSFLRAFPMHGLVFVGYEATVSIL 757
            + SLYRGLLSP  G G      F  Y     F   R+G D    +T  EM  +G++AG+  SP RQ+ ER+KSVMQV++A  G    PY WSG C  ++  R                  A+Q               ++  SN   S+ +    +    +  + +P P L +LAGG+AG   WLPP Y LDVLK+RMQ+A PGVY N+WDCA K+++ EG+ +F+RGL  + +RAFP++  +F+GYE T++ L
Sbjct:   57 ISSLYRGLLSPQAGFGVTFAISFAGYGQGTRFF--RKG-DNKRELTLGEMTASGAWAGLLQSPARQIFERIKSVMQVRKAAGGADKPPYRWSGECLYEMNVR------------------ALQ--------------KMMAASNASGSSSNESNIVHRKPSSSTPLP-PHLLLLAGGVAGTVQWLPPFYCLDVLKSRMQSALPGVYDNVWDCAKKSYQQEGIGVFFRGLPVALIRAFPLNACIFLGYETTLAAL 274          
BLAST of mRNA_H-elongata_contig14973.3326.1 vs. uniprot
Match: A0A482SEK8_9ARCH (MC/SLC25 family protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SEK8_9ARCH)

HSP 1 Score: 131 bits (329), Expect = 5.610e-32
Identity = 68/180 (37.78%), Postives = 99/180 (55.00%), Query Frame = 2
Query:  146 EMACAGSFAGIANSPMRQVVERVKSVMQVQRAGKYISPYSWSGACAVDLVRREGFGMGLFRGNTATAVREAVQLAIYYPT---VSSVFPNPVVFVSNDLASAGHVVYFISEDRARHSGVPEPLLQMLAGGLAGCAMWLPPVYTLDVLKTRMQTAAPGVYKNMWDCAAKTWRTEGLQMFYR 676
            +++ AG++ G+  SP RQ+VER+KSVMQ+       SPYSWSGACA  LV+ EG  +GLF+G ++  +RE  Q ++YYP      S++   +                   D  +        +  LAGG AG   WLPP+Y  DV+K+RMQTA  G Y  + DCA + ++  G  +F+R
Sbjct:   48 DLSMAGAYTGVLQSPARQLVERIKSVMQIHERSGGKSPYSWSGACAYHLVKTEGVRVGLFQGFSSVLLREIPQFSVYYPCYEFAKSIYTEKI------------------PDNPK-------TVNFLAGGTAGVVQWLPPIYCFDVIKSRMQTAPKGAYSGLMDCARQLYQAHGSSVFFR 202          
BLAST of mRNA_H-elongata_contig14973.3326.1 vs. uniprot
Match: A0A061S4Y8_9CHLO (Solute carrier family 25 (Mitochondrial carnitine/acylcarnitine transporter), member 20/29 n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061S4Y8_9CHLO)

HSP 1 Score: 124 bits (312), Expect = 2.830e-28
Identity = 87/260 (33.46%), Postives = 126/260 (48.46%), Query Frame = 2
Query:   14 YRGLLSPVLGHGTLKGFGFTAYAMAGSFILRRRGADEGAHM---------TKLEMACAGSFAGIANSPMRQVVERVKSVMQVQRAGKYISPYSWSGACAVDLVRREGFGMGLFRGNTATAVREAVQLAIYYPTVSSVFPNPVVFVSNDLASAGHVVYFISEDRARHSGVPEPLLQMLAGGLAGCAMWLPPVYTLDVLKTRMQTAAPGVYKNMWDCAAKTWRTEGLQMFYRGLGPSFLRAFPMHGLVFVGYEATVSILTPL 766
            Y+G+ +P+   G +    F+  A+     LR        HM         T  E   AG+ AG  +S +R   ERVK+V+Q   A  + +  +   ACA +LVRR GF  GLF G  AT  RE  Q+A+Y+ T  +V  + +        +A  VV                     AGG AG   WL   Y +DV+KTR+Q A P  Y  +  CAA + R EG  + +RG+G + +RAFP+HG +F+  EA +S++  L
Sbjct:   73 YKGIGAPLCAFGVINAINFSVNALT----LRSLKDFRNTHMQQDNLEQQPTTAEALFAGAMAGFCSSFVRGPAERVKTVLQANGAASWKNKGTL--ACARELVRRHGFVDGLFTGTGATIAREIPQMALYFLTYETVKSHSLQLFGEASGTAAIVV---------------------AGGSAGVLQWLA-TYPIDVVKTRIQAAPPRTYSGLLHCAADSVRREGPGVMWRGVGVAVVRAFPLHGTIFLTSEAALSLIARL 304          
BLAST of mRNA_H-elongata_contig14973.3326.1 vs. uniprot
Match: A4RTN0_OSTLU (MC family transporter: carnitine/acylcarnitine n=1 Tax=Ostreococcus lucimarinus (strain CCE9901) TaxID=436017 RepID=A4RTN0_OSTLU)

HSP 1 Score: 123 bits (308), Expect = 6.820e-28
Identity = 89/251 (35.46%), Postives = 125/251 (49.80%), Query Frame = 2
Query:   11 LYRGLLSPVLGHGTLKGFGFTAYAMAGSFILRRRGADEGAHMTKLEMACAGSFAGIANSPMRQVVERVKSVMQVQR--AGKYISPYSWSGACAVDLVRREGFGMGLFRGNTATAVREAVQLAIYYPTVSSVFPNPVVFVSNDLASAGHVVYFISEDRARHSGVPEPLLQMLAGGLAGCAMWLPPVYTLDVLKTRMQTAAPGVYKNMWDCAAKTWRTEGLQMFYRGLGPSFLRAFPMHGLVFVGYEATVSIL 757
            LYRGL +P+L +G +    F+  A     I    GA+  A  T L    +G+ AG+ +S +R   ER+K++ QV    +G+Y S  S     A  L R  G   G+F G  AT  RE  Q A+Y+ T   +    +  +  D   A       +    R + +      +LAGG AG   WL   Y LDV K+R+Q AAPGVY  + DCA K+   EG  + +RGL  + LRAFP+H  +F   EA  S+L
Sbjct:   70 LYRGLTAPMLAYGAINAVAFSTNAYVRDSIEEAFGAE--AASTTLAGVVSGASAGLVSSFVRGPAERLKTIQQVVDCDSGRYRSATS----TAFTLAREHGVMKGIFAGTGATIAREIPQCAVYFLTYDRLKSVCMRKLCGDGVDARD-----APPSTRAAAI------VLAGGSAGAVQWLL-TYPLDVTKSRIQAAAPGVYSGVLDCAMKSVSREGPMVLFRGLNMALLRAFPLHASIFASCEAVHSLL 302          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig14973.3326.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JUA4_9PHAE9.830e-8355.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FLY9_ECTSI3.030e-7551.75Carnitine/acylcarnitine carrier protein n=1 Tax=Ec... [more]
D7FM07_ECTSI4.060e-7255.66Carnitine/acylcarnitine carrier protein n=1 Tax=Ec... [more]
A0A836C8G7_9STRA4.710e-6447.22Carnitine/acylcarnitine carrier protein n=1 Tax=Tr... [more]
W7TE76_9STRA2.200e-6145.31Mitochondrial carrier family n=1 Tax=Nannochlorops... [more]
A0A4D9D591_9STRA7.530e-4446.15Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
K8Z8A3_NANGC2.830e-4338.58Mitochondrial carrier family n=1 Tax=Nannochlorops... [more]
A0A482SEK8_9ARCH5.610e-3237.78MC/SLC25 family protein n=1 Tax=archaeon TaxID=190... [more]
A0A061S4Y8_9CHLO2.830e-2833.46Solute carrier family 25 (Mitochondrial carnitine/... [more]
A4RTN0_OSTLU6.820e-2835.46MC family transporter: carnitine/acylcarnitine n=1... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig14973contigH-elongata_contig14973:3554..6967 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score240.4
Seed ortholog evalue8.6e-61
Seed eggNOG ortholog2880.D7FM07
KEGG koko:K15109
KEGG TC2.A.29.8
KEGG Pathwayko04714,map04714
EggNOG free text desc.mitochondrial transport
EggNOG OGsKOG0758@1,KOG0758@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02000
Hectar predicted targeting categoryother localisation
Exons6
Model size1453
Cds size690
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig14973.3326.1prot_H-elongata_contig14973.3326.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig14973 4235..6885 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929885.284444-UTR-H-elongata_contig14973:3553..42341622929885.284444-UTR-H-elongata_contig14973:3553..4234Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig14973 3554..4234 -
1691679195.214102-UTR-H-elongata_contig14973:3553..42341691679195.214102-UTR-H-elongata_contig14973:3553..4234Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig14973 3554..4234 -
1622929885.398083-UTR-H-elongata_contig14973:6885..69671622929885.398083-UTR-H-elongata_contig14973:6885..6967Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig14973 6886..6967 -
1691679195.2889009-UTR-H-elongata_contig14973:6885..69671691679195.2889009-UTR-H-elongata_contig14973:6885..6967Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig14973 6886..6967 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929885.3021324-CDS-H-elongata_contig14973:4234..43581622929885.3021324-CDS-H-elongata_contig14973:4234..4358Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14973 4235..4358 -
1691679195.2248964-CDS-H-elongata_contig14973:4234..43581691679195.2248964-CDS-H-elongata_contig14973:4234..4358Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14973 4235..4358 -
1622929885.3194368-CDS-H-elongata_contig14973:4596..47911622929885.3194368-CDS-H-elongata_contig14973:4596..4791Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14973 4597..4791 -
1691679195.2351224-CDS-H-elongata_contig14973:4596..47911691679195.2351224-CDS-H-elongata_contig14973:4596..4791Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14973 4597..4791 -
1622929885.3383725-CDS-H-elongata_contig14973:5013..51661622929885.3383725-CDS-H-elongata_contig14973:5013..5166Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14973 5014..5166 -
1691679195.2436144-CDS-H-elongata_contig14973:5013..51661691679195.2436144-CDS-H-elongata_contig14973:5013..5166Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14973 5014..5166 -
1622929885.3516984-CDS-H-elongata_contig14973:5660..57311622929885.3516984-CDS-H-elongata_contig14973:5660..5731Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14973 5661..5731 -
1691679195.2651803-CDS-H-elongata_contig14973:5660..57311691679195.2651803-CDS-H-elongata_contig14973:5660..5731Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14973 5661..5731 -
1622929885.3665702-CDS-H-elongata_contig14973:6352..64761622929885.3665702-CDS-H-elongata_contig14973:6352..6476Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14973 6353..6476 -
1691679195.2742145-CDS-H-elongata_contig14973:6352..64761691679195.2742145-CDS-H-elongata_contig14973:6352..6476Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14973 6353..6476 -
1622929885.3837404-CDS-H-elongata_contig14973:6862..68851622929885.3837404-CDS-H-elongata_contig14973:6862..6885Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14973 6863..6885 -
1691679195.2813606-CDS-H-elongata_contig14973:6862..68851691679195.2813606-CDS-H-elongata_contig14973:6862..6885Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14973 6863..6885 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig14973.3326.1

>prot_H-elongata_contig14973.3326.1 ID=prot_H-elongata_contig14973.3326.1|Name=mRNA_H-elongata_contig14973.3326.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=230bp
MAGSFILRRRGADEGAHMTKLEMACAGSFAGIANSPMRQVVERVKSVMQV
QRAGKYISPYSWSGACAVDLVRREGFGMGLFRGNTATAVREAVQLAIYYP
TVSSVFPNPVVFVSNDLASAGHVVYFISEDRARHSGVPEPLLQMLAGGLA
GCAMWLPPVYTLDVLKTRMQTAAPGVYKNMWDCAAKTWRTEGLQMFYRGL
GPSFLRAFPMHGLVFVGYEATVSILTPLC*
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mRNA from alignment at H-elongata_contig14973:3554..6967-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig14973.3326.1 ID=mRNA_H-elongata_contig14973.3326.1|Name=mRNA_H-elongata_contig14973.3326.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3414bp|location=Sequence derived from alignment at H-elongata_contig14973:3554..6967- (Himanthalia elongata Himel1 dioecious)
GGTCCTTTCGCTTTACCGGGGTCTGCTTTCCCCGGTGTTGGGCCACGGGA CGCTTAAAGGGTTCGGCTTCACGGCGTATGCTATGGCTGGAAGCTTCATT TTGAGGTGGGCTTGGTTTGAAGCTTTGCCGGTGCTCTGATTGAAAACCTG AACAGTTTTCAGCGAGTAACGCGATGGCCGAGGCCGGGGCATCGGGTTTT GGCGTCAGCGCCCCTGCACCGTATCGGTCTGAAGCGGTCACTCGTGTCGG CCACGAGCGCAGCGGTATATACTCTTAAGCCTTATCGTTCTTATTCACTC TTCAGCGTAGCTGATCGCGTGTTGCCCTTTTTTCGGGTATATCGGTTGAC AGTGCGCTTATTTACGCGGTGATGCTAGTGAAGTTGGTTTTATACACAAA CCTATTAGCATGTTCCTTTTTGGCTTCAAACCATCCATAATAGAAGTCGG TTACGCTGGCTAAACTTTCTCAAACAACGCGGCGCCTCTAGGCGAAGAGG AGCAGACGAGGGGGCTCACATGACGAAGTTAGAGATGGCTTGTGCGGGAA GCTTTGCGGGAATAGCGAACTCCCCTATGCGGCAGGTCGTCGAGAGGGTC AAGAGCGTCATGCAGGTGACGCTTGATGCTTGCAACCGGAAGTATGTATT ATCGCAAAGGTGGCTGCAAGACTCTTGTCCTCGACGGGTTATTGTACTCG CAGCAGTTCTCTCTCTCTCTCACACCCCCTCTTCTTCTACAGCTCACGTC ATAGTCCCCACATGATGGATAATAAACGTGTACGGGATACTAATGGGATG CCTGACATTATACCGTTGACTCGATCAACTTAATATTGGGGAACACGATA AATCACATGTACACATTCGAACCTGACGATAGTTAGTCCGCTGAACTGCA ACTTACACGGTGCTATGGAGGCGTGGATGTTCGGAGGGGTGAAATGAGTT CATATGTTTTTAAAAATAAAGCAGGCGGGTGTCCCAAGGACCCGATCAAG ACTCCACGAGCATTCAAACTACTCTACGACAGAAGTGCGAGCCCAGGCAC GCCATGTAGAGCTTTGCCCTCCCGTGTTAAGGGTTTCCTCATTATGTCGC ATCCTTTCATCTCTTTGATGGTAACTCTTATCGTTTGGTTTTCTGTCTGG TTTGTTTTATAGAAGGCTAGTGCGGCCGATTTCCCAATACAGCACTCTCA AACGCGTCTGTTGTGGTATCCCCGCCTCGATGTCAGGTGCAGCGGGCCGG AAAGTATATATCACCATATTCTTGGAGCGGTGCGTGCGCTGTGGACCTTG TACGAAGGTGTGTTCTTGTAACTTTTCTTTCCGATCACTCGGTTGTTGAT TTTTAAAAGATGACTTTGGAGGTGTTGATTTTTAAAAGATGACTCTGCAG ACCCTTTGGTGGCTGGGTTGACCGTGGGCTGACCGCCACGTTTTATAGCG AACGAGGGATGTCGCACAGGTACGGTAGGCAGACATACCTCTCGTAGTGA GTTATACAAAAAAAAGCGTATAGACAAAAGTTTACAGGCGATGACAACAT AATTGCCTATATGCATTGATCCATCTTTGTCGGCTATGCGCAACTTTATG TTATTGACTCAAGAGGGCGAAGATAAGATCAGACATTATATATCCGTTAG AGATATCGCCGCTGAGATAACTTGTACAGCCCAATTTCAGGGTGGCAAAG GTGTTACGCTTTTCTTGCTAACCTCGACGCTGAAATTGTGTAAGCGTCAG AAGACCAATCGATCCTACACGTAATGCTTGCGCTGACTGTGTTTTATTCA GAGAGGGATTCGGTATGGGACTATTTCGAGGCAACACGGCCACGGCTGTA AGAGAAGCCGTCCAGCTCGCGATTTATTACCCAACGGTGAGCTCTGTTTT TCCCAACCCCGTTGTCTTCGTTTCGAACGACCTTGCATCAGCGGGCCATG TTGTGTGTTATTGTGGGGGAGCCACCTGCTTGCGGTGGCTCAACTTCCCC CGGTCCCCTTAGTTTGAACCATAGCTGGAAAAGCTTGAAGTCGTGGCTGG TAGTACGCTGGTGTGTTTAACCGGGTCTTCGTGATTGCTCTCAGCGCTTG GTTCTAAATGACGTCCACGTCTGATAGCCATCTTCCGCTATCTTGCCCAA CACCGGCAGTACCACGTCGCGAAAAGCTACTTCATCTCGGAGGATCGCGC GAGACATAGCGGCGTCCCAGAGCCGTTGCTTCAGATGCTGGCGGGAGGCC TGGCAGGTTGTGCCATGTGGTTGCCACCCGTCTATACGCTAGATGTGCTA AAGACAAGGATGCAGACGGCCGCGCCGGGCGTATATAAGAACATGTGGGA CTGCGCTGCCAAAACCTGGAGGTCAGTGTTCGTCGTTGACTCCATCAATG CCGCAAGTTGCACGTCTTGCGAACGAGCCGCGTATTGCGATAGTGACTTC TCTCGGGCTAACATAACTTCTTGTTGCGCTGCCTTTCGTTAGCGTTGGCT CGAAAACCTGACGTTTGGTTCGAGAAGCCGTGCGTGCAACCCTTTTGAAT TGTTCTCCTTATGCTGCTTGCCCCCTGCCACGTTTCGTCTTCTTCTGCAC TTTGTAAAGGACGGAAGGCCTGCAGATGTTCTACAGGGGACTTGGTCCAT CCTTTTTGCGCGCATTCCCCATGCACGGACTCGTTTTTGTCGGCTACGAG GCGACCGTTTCGATTTTAACTCCGTTATGCTAGCAAAGCAAAACTAGATG TGGTGTTTGCCTTGGTGTGTCGCGGCTGATGAGATTCCTACGCTGTTGCC CATCTATAATCTGGGTTATTAGGTTTCTACTCTCGTGGTACGCCGTAAGT TTTCCGTTACCCTTCTTGTAAAGTCGTATTTTCACGACGGTCAGGTCCTA AATAAAAAATATCCTAAGCGAAGTTGTTGAGCTCCCTTTGTTGTGGTTGG TTGCGCTGTGATGGGGTCCATTTTGCAAACTTCGCGATATGTTTCACCAC TTCTGTAGAAATCCGTGGTAATGACGATTTTGAGAATATCAGCTTTACCT GCTGCAGAAGTGGTGTTTCCAGTGCCCAATGACGATTGGATGGCTTCTGG AATCGTCCTACGAAAATCAGAAAAGCTTCCTCTTCTAGGATGTACCTTCG AATAGAGATCTCGGGGGAGGCAAATGTCGCGCGTGCTGACGTGCAACGTA GATCGCCGCGAGTTATAGCTTTGTCCACAGACTCAGTTTGCTGGGTAGCG AAGTTTCTCCTCACTTTTTGTTGGGAGTGTATTTTCGGTGAAGATTTAAT ACTGTGTCCTTGCGGCGTTTGCAAAACAGCTTTGGAATGAAGCTCACAGG GACCTTGTTGTGGAGTCACCCGCGGAGTACCGCATATATACTCAAATCTA TACCATCTTCCAAC
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Coding sequence (CDS) from alignment at H-elongata_contig14973:3554..6967-

>mRNA_H-elongata_contig14973.3326.1 ID=mRNA_H-elongata_contig14973.3326.1|Name=mRNA_H-elongata_contig14973.3326.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1380bp|location=Sequence derived from alignment at H-elongata_contig14973:3554..6967- (Himanthalia elongata Himel1 dioecious)
ATGGCTGGAAGCTTCATTTTGAGATGGCTGGAAGCTTCATTTTGAGGCGA
AGAGGAGCAGACGAGGGGGCTCACATGACGAAGTTAGAGATGGCTTGTGC
GGGAAGCTTTGCGGGAATAGCGAACTCCCCTATGCGGCAGGTCGTCGAGA
GGGTCAAGAGCGTCATGCAGGCGAAGAGGAGCAGACGAGGGGGCTCACAT
GACGAAGTTAGAGATGGCTTGTGCGGGAAGCTTTGCGGGAATAGCGAACT
CCCCTATGCGGCAGGTCGTCGAGAGGGTCAAGAGCGTCATGCAGGTGCAG
CGGGCCGGAAAGTATATATCACCATATTCTTGGAGCGGTGCGTGCGCTGT
GGACCTTGTACGAAGGTGCAGCGGGCCGGAAAGTATATATCACCATATTC
TTGGAGCGGTGCGTGCGCTGTGGACCTTGTACGAAGAGAGGGATTCGGTA
TGGGACTATTTCGAGGCAACACGGCCACGGCTGTAAGAGAAGCCGTCCAG
CTCGCGATTTATTACCCAACGGTGAGCTCTGTTTTTCCCAACCCCGTTGT
CTTCGTTTCGAACGACCTTGCATCAGCGGGCCATGTTGTAGAGGGATTCG
GTATGGGACTATTTCGAGGCAACACGGCCACGGCTGTAAGAGAAGCCGTC
CAGCTCGCGATTTATTACCCAACGGTGAGCTCTGTTTTTCCCAACCCCGT
TGTCTTCGTTTCGAACGACCTTGCATCAGCGGGCCATGTTGTCTACTTCA
TCTCGGAGGATCGCGCGAGACATAGCGGCGTCCCAGAGCCGTTGCTTCAG
ATGCTGGCGGGAGGCCTGGCAGGTTGTGCCATGTGGTTGCCACCCGTCTA
TACGCTAGATGTGCTAAAGACAAGGATGCAGACGGCCGCGCCGGGCGTAT
ATAAGAACATGTGGGACTGCGCTGCCAAAACCTGGAGCTACTTCATCTCG
GAGGATCGCGCGAGACATAGCGGCGTCCCAGAGCCGTTGCTTCAGATGCT
GGCGGGAGGCCTGGCAGGTTGTGCCATGTGGTTGCCACCCGTCTATACGC
TAGATGTGCTAAAGACAAGGATGCAGACGGCCGCGCCGGGCGTATATAAG
AACATGTGGGACTGCGCTGCCAAAACCTGGAGGACGGAAGGCCTGCAGAT
GTTCTACAGGGGACTTGGTCCATCCTTTTTGCGCGCATTCCCCATGCACG
GACTCGTTTTTGTCGGCTACGAGGCGACCGTTTCGATTTTAACTCCGTTA
TGCTAGGACGGAAGGCCTGCAGATGTTCTACAGGGGACTTGGTCCATCCT
TTTTGCGCGCATTCCCCATGCACGGACTCGTTTTTGTCGGCTACGAGGCG
ACCGTTTCGATTTTAACTCCGTTATGCTAG
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