mRNA_H-elongata_contig149702.3324.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig149702.3324.1
Unique NamemRNA_H-elongata_contig149702.3324.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig149702.3324.1 vs. uniprot
Match: D7FN40_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN40_ECTSI)

HSP 1 Score: 81.3 bits (199), Expect = 5.640e-19
Identity = 42/55 (76.36%), Postives = 47/55 (85.45%), Query Frame = 1 
Query:   28 KKRRLDEDGTASAFAQSPAEGRKEKLERWLKPLNNEQLVKLLVDMYVICCFPTVL 192
            KKRRLDEDG ASAFA++ AE RKEKLE WLKPL+NEQLVKLL+DMYV+ C   VL
Sbjct:    8 KKRRLDEDGNASAFAENTAESRKEKLETWLKPLDNEQLVKLLLDMYVMFCASCVL 62
[Close]
BLAST of mRNA_H-elongata_contig149702.3324.1 vs. uniprot
Match: D7FN41_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN41_ECTSI)

HSP 1 Score: 72.0 bits (175), Expect = 3.310e-13
Identity = 36/45 (80.00%), Postives = 41/45 (91.11%), Query Frame = 1 
Query:   28 KKRRLDEDGTASAFAQSPAEGRKEKLERWLKPLNNEQLVKLLVDM 162
            KKRRLDEDG ASAFA++ AE RKEKLE WLKPL+NEQLVKLL+D+
Sbjct:   97 KKRRLDEDGNASAFAENTAESRKEKLETWLKPLDNEQLVKLLLDI 141
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig149702.3324.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FN40_ECTSI5.640e-1976.36Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FN41_ECTSI3.310e-1380.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig149702contigH-elongata_contig149702:358..549 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-06_008300.1
Exons1
Model size192
Cds size192
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929885.1966548-CDS-H-elongata_contig149702:357..5491622929885.1966548-CDS-H-elongata_contig149702:357..549Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig149702 358..549 -
1691679195.1889572-CDS-H-elongata_contig149702:357..5491691679195.1889572-CDS-H-elongata_contig149702:357..549Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig149702 358..549 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig149702.3324.1prot_H-elongata_contig149702.3324.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig149702 358..549 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig149702.3324.1

>prot_H-elongata_contig149702.3324.1 ID=prot_H-elongata_contig149702.3324.1|Name=mRNA_H-elongata_contig149702.3324.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=64bp
MAESFEDPSKKRRLDEDGTASAFAQSPAEGRKEKLERWLKPLNNEQLVKL
LVDMYVICCFPTVL
back to top

mRNA from alignment at H-elongata_contig149702:358..549-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig149702.3324.1 ID=mRNA_H-elongata_contig149702.3324.1|Name=mRNA_H-elongata_contig149702.3324.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=192bp|location=Sequence derived from alignment at H-elongata_contig149702:358..549- (Himanthalia elongata Himel1 dioecious)
ATGGCGGAATCCTTCGAAGACCCCAGCAAGAAGCGCCGCCTGGATGAGGA
TGGCACTGCCTCAGCATTTGCGCAATCGCCTGCTGAAGGGCGTAAGGAGA
AGCTCGAGAGGTGGCTCAAGCCTCTAAACAACGAACAACTCGTCAAGCTC
CTTGTGGACATGTACGTGATTTGTTGTTTCCCGACTGTTTTA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig149702:358..549-

>mRNA_H-elongata_contig149702.3324.1 ID=mRNA_H-elongata_contig149702.3324.1|Name=mRNA_H-elongata_contig149702.3324.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=384bp|location=Sequence derived from alignment at H-elongata_contig149702:358..549- (Himanthalia elongata Himel1 dioecious)
ATGGCGGAATCCTTCGAAGACCCCAGCAAGAAGCGCCGCCTGGATGAGGA
TGGCACTGCCTCAGCATTTGCGCAATCGCCTGCTGAAGGGCGTAAGGAGA
AGCTCGAGAGGTGGCTCAAGCCTCTAAACAACGAACAACTCGTCAAGCTC
CTTGTGGACATGTACGTGATTTGTTGTTTCCCGACTGTTTTAATGGCGGA
ATCCTTCGAAGACCCCAGCAAGAAGCGCCGCCTGGATGAGGATGGCACTG
CCTCAGCATTTGCGCAATCGCCTGCTGAAGGGCGTAAGGAGAAGCTCGAG
AGGTGGCTCAAGCCTCTAAACAACGAACAACTCGTCAAGCTCCTTGTGGA
CATGTACGTGATTTGTTGTTTCCCGACTGTTTTA
back to top