mRNA_H-elongata_contig149636.3319.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig149636.3319.1
Unique NamemRNA_H-elongata_contig149636.3319.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig149636.3319.1 vs. uniprot
Match: A0A6H5JYB6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYB6_9PHAE)

HSP 1 Score: 87.0 bits (214), Expect = 3.580e-20
Identity = 41/55 (74.55%), Postives = 43/55 (78.18%), Query Frame = 1
Query:    1 VRRSVGAIGYFPSYTLGAVMACQFFEAARKALPGLDEELASGNFHTLKNWLNREV 165
            +  SVGA GYFPSYTLGAVMACQF EAAR ALP LD  L +GNF  LK WLNREV
Sbjct:   54 IHWSVGAFGYFPSYTLGAVMACQFLEAARLALPDLDSSLEAGNFEPLKTWLNREV 108          
BLAST of mRNA_H-elongata_contig149636.3319.1 vs. uniprot
Match: D8LIA5_ECTSI (Probable carboxypeptidase Cxp n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIA5_ECTSI)

HSP 1 Score: 85.5 bits (210), Expect = 4.180e-18
Identity = 40/55 (72.73%), Postives = 42/55 (76.36%), Query Frame = 1
Query:    1 VRRSVGAIGYFPSYTLGAVMACQFFEAARKALPGLDEELASGNFHTLKNWLNREV 165
            +  SVGA GYFPSYTLGAVMACQF EAA+ ALP LD  L  GNF  LK WLNREV
Sbjct:  528 IHWSVGAFGYFPSYTLGAVMACQFLEAAKLALPDLDSSLEDGNFEPLKTWLNREV 582          
BLAST of mRNA_H-elongata_contig149636.3319.1 vs. uniprot
Match: A0A7S2KNN7_BIGNA (Hypothetical protein n=1 Tax=Bigelowiella natans TaxID=227086 RepID=A0A7S2KNN7_BIGNA)

HSP 1 Score: 82.0 bits (201), Expect = 6.670e-17
Identity = 36/55 (65.45%), Postives = 45/55 (81.82%), Query Frame = 1
Query:    1 VRRSVGAIGYFPSYTLGAVMACQFFEAARKALPGLDEELASGNFHTLKNWLNREV 165
            V  SVGAIGYFPSY+LGA+MA QF+EAA+KA+P L+E++A GNF  LK WLN  +
Sbjct:  402 VHWSVGAIGYFPSYSLGAMMAAQFYEAAKKAIPDLEEQIAKGNFSPLKTWLNENI 456          
BLAST of mRNA_H-elongata_contig149636.3319.1 vs. uniprot
Match: A0A836CFE7_9STRA (Putative carboxypeptidase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFE7_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 6.890e-17
Identity = 33/55 (60.00%), Postives = 46/55 (83.64%), Query Frame = 1
Query:    1 VRRSVGAIGYFPSYTLGAVMACQFFEAARKALPGLDEELASGNFHTLKNWLNREV 165
            V  + GA GYFPSYTLGA+MACQF+EAA++A+P L++++ASG+F  LK WLN+ +
Sbjct:  480 VHHAAGAFGYFPSYTLGAIMACQFYEAAKRAIPDLEDKIASGDFKPLKEWLNQNI 534          
BLAST of mRNA_H-elongata_contig149636.3319.1 vs. uniprot
Match: A0A4P5XMZ2_9BACT (Uncharacterized protein n=1 Tax=Phycisphaerae bacterium TaxID=2026778 RepID=A0A4P5XMZ2_9BACT)

HSP 1 Score: 74.3 bits (181), Expect = 1.510e-15
Identity = 32/55 (58.18%), Postives = 43/55 (78.18%), Query Frame = 1
Query:    1 VRRSVGAIGYFPSYTLGAVMACQFFEAARKALPGLDEELASGNFHTLKNWLNREV 165
            V  S+GA GYFP+YTLG + + QFF+AA+KA+PGL++  A G+F  L+ WLNREV
Sbjct:   50 VHWSMGAFGYFPTYTLGTLYSAQFFDAAKKAMPGLEDGFAKGDFVPLREWLNREV 104          
BLAST of mRNA_H-elongata_contig149636.3319.1 vs. uniprot
Match: A0A7T0C3R8_9BACT (Metal-dependent carboxypeptidase n=1 Tax=Candidatus Nitrohelix vancouverensis TaxID=2705534 RepID=A0A7T0C3R8_9BACT)

HSP 1 Score: 76.6 bits (187), Expect = 5.380e-15
Identity = 32/55 (58.18%), Postives = 43/55 (78.18%), Query Frame = 1
Query:    1 VRRSVGAIGYFPSYTLGAVMACQFFEAARKALPGLDEELASGNFHTLKNWLNREV 165
            V  S GA GYFPSYTLGA+ ACQF++A R+ALPG+++E++ GN   +KNWLN  +
Sbjct:  410 VHWSGGAFGYFPSYTLGAMYACQFYQALREALPGVEDEISQGNLAPVKNWLNENI 464          
BLAST of mRNA_H-elongata_contig149636.3319.1 vs. uniprot
Match: A0A7S2U1I1_9EUKA (Hypothetical protein n=2 Tax=Lotharella TaxID=74819 RepID=A0A7S2U1I1_9EUKA)

HSP 1 Score: 75.5 bits (184), Expect = 1.350e-14
Identity = 32/55 (58.18%), Postives = 44/55 (80.00%), Query Frame = 1
Query:    1 VRRSVGAIGYFPSYTLGAVMACQFFEAARKALPGLDEELASGNFHTLKNWLNREV 165
            V  SVGAIGYFPSY+LGA+MA QF+EAA+  +P L+++++ GNF  LK WLN ++
Sbjct:  370 VHWSVGAIGYFPSYSLGAMMAAQFYEAAKAGIPDLEDKISKGNFEPLKAWLNEKI 424          
BLAST of mRNA_H-elongata_contig149636.3319.1 vs. uniprot
Match: A0A2H0MLC6_9BACT (Metal-dependent carboxypeptidase n=1 Tax=Nitrospinae bacterium CG11_big_fil_rev_8_21_14_0_20_56_8 TaxID=1974049 RepID=A0A2H0MLC6_9BACT)

HSP 1 Score: 74.7 bits (182), Expect = 2.570e-14
Identity = 31/55 (56.36%), Postives = 42/55 (76.36%), Query Frame = 1
Query:    1 VRRSVGAIGYFPSYTLGAVMACQFFEAARKALPGLDEELASGNFHTLKNWLNREV 165
            V  S G  GYFPSYTLGA+ ACQF++A +K LPGL+ ++A GNF  +K WLN+++
Sbjct:  411 VHWSGGDFGYFPSYTLGALYACQFYQALKKELPGLENDIAEGNFSRIKGWLNQKI 465          
BLAST of mRNA_H-elongata_contig149636.3319.1 vs. uniprot
Match: A0A1I4FUC4_9PROT (Metal-dependent carboxypeptidase n=2 Tax=Nitrosomonas aestuarii TaxID=52441 RepID=A0A1I4FUC4_9PROT)

HSP 1 Score: 73.6 bits (179), Expect = 6.550e-14
Identity = 31/52 (59.62%), Postives = 39/52 (75.00%), Query Frame = 1
Query:   10 SVGAIGYFPSYTLGAVMACQFFEAARKALPGLDEELASGNFHTLKNWLNREV 165
            S GA GYFPSYTLGA+ ACQFF   +KALP  D+ + +GNF  +KNWLN ++
Sbjct:  408 SSGAFGYFPSYTLGAIYACQFFMTMQKALPDTDKNIEAGNFKPVKNWLNEKI 459          
BLAST of mRNA_H-elongata_contig149636.3319.1 vs. uniprot
Match: A0A1Y2H3X8_9FUNG (M32 carboxypeptidase Taq metallopeptidase peptidase n=1 Tax=Lobosporangium transversale TaxID=64571 RepID=A0A1Y2H3X8_9FUNG)

HSP 1 Score: 72.4 bits (176), Expect = 1.680e-13
Identity = 30/52 (57.69%), Postives = 38/52 (73.08%), Query Frame = 1
Query:   10 SVGAIGYFPSYTLGAVMACQFFEAARKALPGLDEELASGNFHTLKNWLNREV 165
            +VG IGYFP+YTLG++ A Q F AA++A+P LDE L  G FH LK WLN  +
Sbjct:  459 AVGLIGYFPTYTLGSIYAVQIFNAAKQAIPDLDEHLVKGEFHVLKKWLNENI 510          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig149636.3319.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JYB6_9PHAE3.580e-2074.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LIA5_ECTSI4.180e-1872.73Probable carboxypeptidase Cxp n=1 Tax=Ectocarpus s... [more]
A0A7S2KNN7_BIGNA6.670e-1765.45Hypothetical protein n=1 Tax=Bigelowiella natans T... [more]
A0A836CFE7_9STRA6.890e-1760.00Putative carboxypeptidase n=1 Tax=Tribonema minus ... [more]
A0A4P5XMZ2_9BACT1.510e-1558.18Uncharacterized protein n=1 Tax=Phycisphaerae bact... [more]
A0A7T0C3R8_9BACT5.380e-1558.18Metal-dependent carboxypeptidase n=1 Tax=Candidatu... [more]
A0A7S2U1I1_9EUKA1.350e-1458.18Hypothetical protein n=2 Tax=Lotharella TaxID=7481... [more]
A0A2H0MLC6_9BACT2.570e-1456.36Metal-dependent carboxypeptidase n=1 Tax=Nitrospin... [more]
A0A1I4FUC4_9PROT6.550e-1459.62Metal-dependent carboxypeptidase n=2 Tax=Nitrosomo... [more]
A0A1Y2H3X8_9FUNG1.680e-1357.69M32 carboxypeptidase Taq metallopeptidase peptidas... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig149636contigH-elongata_contig149636:599..763 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score86.7
Seed ortholog evalue3.8e-15
Seed eggNOG ortholog2880.D8LIA5
KEGG koko:K01299
EggNOG free text desc.Carboxypeptidase Taq (M32) metallopeptidase
EggNOG OGs2QQRM@2759,COG2317@1
EC3.4.17.19
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size165
Cds size165
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929884.683794-CDS-H-elongata_contig149636:598..7631622929884.683794-CDS-H-elongata_contig149636:598..763Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig149636 599..763 -
1691679194.9663625-CDS-H-elongata_contig149636:598..7631691679194.9663625-CDS-H-elongata_contig149636:598..763Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig149636 599..763 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig149636.3319.1prot_H-elongata_contig149636.3319.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig149636 599..763 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig149636.3319.1

>prot_H-elongata_contig149636.3319.1 ID=prot_H-elongata_contig149636.3319.1|Name=mRNA_H-elongata_contig149636.3319.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=55bp
VRRSVGAIGYFPSYTLGAVMACQFFEAARKALPGLDEELASGNFHTLKNW
LNREV
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mRNA from alignment at H-elongata_contig149636:599..763-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig149636.3319.1 ID=mRNA_H-elongata_contig149636.3319.1|Name=mRNA_H-elongata_contig149636.3319.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=165bp|location=Sequence derived from alignment at H-elongata_contig149636:599..763- (Himanthalia elongata Himel1 dioecious)
GTCCGCAGGTCAGTCGGGGCGATCGGGTACTTCCCGAGCTACACGCTCGG CGCGGTGATGGCTTGTCAGTTCTTTGAGGCCGCGCGCAAGGCTCTCCCCG GCCTAGACGAAGAGCTCGCTTCGGGGAACTTCCATACCCTAAAAAACTGG CTGAACCGAGAGGTG
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Coding sequence (CDS) from alignment at H-elongata_contig149636:599..763-

>mRNA_H-elongata_contig149636.3319.1 ID=mRNA_H-elongata_contig149636.3319.1|Name=mRNA_H-elongata_contig149636.3319.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=330bp|location=Sequence derived from alignment at H-elongata_contig149636:599..763- (Himanthalia elongata Himel1 dioecious)
GTCCGCAGGTCAGTCGGGGCGATCGGGTACTTCCCGAGCTACACGCTCGG
CGCGGTGATGGCTTGTCAGTTCTTTGAGGCCGCGCGCAAGGCTCTCCCCG
GCCTAGACGAAGAGCTCGCTTCGGGGAACTTCCATACCCTAAAAAACTGG
CTGAACCGAGAGGTGGTCCGCAGGTCAGTCGGGGCGATCGGGTACTTCCC
GAGCTACACGCTCGGCGCGGTGATGGCTTGTCAGTTCTTTGAGGCCGCGC
GCAAGGCTCTCCCCGGCCTAGACGAAGAGCTCGCTTCGGGGAACTTCCAT
ACCCTAAAAAACTGGCTGAACCGAGAGGTG
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