mRNA_H-elongata_contig149513.3311.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig149513.3311.1
Unique NamemRNA_H-elongata_contig149513.3311.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig149513.3311.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig149513contigH-elongata_contig149513:689..1474 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size321
Cds size318
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig149513.3311.1prot_H-elongata_contig149513.3311.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig149513 692..1474 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929884.129271-UTR-H-elongata_contig149513:688..6911622929884.129271-UTR-H-elongata_contig149513:688..691Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig149513 689..691 +
1691679194.7264693-UTR-H-elongata_contig149513:688..6911691679194.7264693-UTR-H-elongata_contig149513:688..691Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig149513 689..691 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929884.1441913-CDS-H-elongata_contig149513:691..8561622929884.1441913-CDS-H-elongata_contig149513:691..856Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig149513 692..856 +
1691679194.7343194-CDS-H-elongata_contig149513:691..8561691679194.7343194-CDS-H-elongata_contig149513:691..856Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig149513 692..856 +
1622929884.1571507-CDS-H-elongata_contig149513:1321..14741622929884.1571507-CDS-H-elongata_contig149513:1321..1474Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig149513 1322..1474 +
1691679194.744418-CDS-H-elongata_contig149513:1321..14741691679194.744418-CDS-H-elongata_contig149513:1321..1474Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig149513 1322..1474 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig149513.3311.1

>prot_H-elongata_contig149513.3311.1 ID=prot_H-elongata_contig149513.3311.1|Name=mRNA_H-elongata_contig149513.3311.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=106bp
MEEDRQREIAAENDSLMHRLAGIMKEDRGALAQRYSHLSVECRANFRRKK
MLELQNRRLARAIRKQKPVYDRSEMGKDEDKRQALLKAMSRAQRREERIA
AFATAS
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mRNA from alignment at H-elongata_contig149513:689..1474+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig149513.3311.1 ID=mRNA_H-elongata_contig149513.3311.1|Name=mRNA_H-elongata_contig149513.3311.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=786bp|location=Sequence derived from alignment at H-elongata_contig149513:689..1474+ (Himanthalia elongata Himel1 dioecious)
CAGATGGAAGAGGACCGACAGCGAGAAATTGCCGCCGAAAACGATTCTCT
CATGCACCGACTAGCGGGTATCATGAAGGAGGATCGGGGGGCTCTCGCAC
AGAGGTACTCCCACCTGTCGGTGGAATGTCGGGCGAACTTTAGAAGGAAA
AAAATGCTCGAGCTCCAGGTAATAAGTAGTATGTTTATCTAGTAATAGCA
GCCCCTACCAAGAGTCGTGGTTTTGTGTCGGCCTGGTTCTGCCCATAAAC
GAACTCGCGCGATTCCAAGACGACAGTGACTGTGTCCTTGTTTTTGCGTT
ATAGGAACGATATATTTTGTGTCCCGAATTATTTCTGGGAACAGAAAAGT
TGCAGCTAGCAGCGAATTCCCGCAAGTACATACATACTACCCTCAAATCA
GTCGATGCCTCGATCCTGGAGTCGACTTTGAATTTTCTATGGCTATACAG
TAATTCAGAAGAAGCGGTTTGGAATTTGGAACCTCAGCGCTTTACACTGT
CCGAGCCGAGCTTGGCGAATGGTGAACTTTTGCAATCCAACAAGACGCGA
CCCTTCGTGACGCCGCCAATATAATCACCTACACCAAAATCTTGCTCCGC
CGGTCGTGCTTCGCTGACACACAACATGTGGAGAATCGACGACTCGCACG
AGCGATCAGGAAGCAAAAGCCTGTTTACGACAGATCGGAGATGGGGAAAG
ACGAAGACAAGCGACAAGCTCTGCTGAAGGCCATGTCTCGGGCGCAACGC
CGGGAAGAAAGGATTGCCGCATTCGCCACGGCCTCG
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Coding sequence (CDS) from alignment at H-elongata_contig149513:689..1474+

>mRNA_H-elongata_contig149513.3311.1 ID=mRNA_H-elongata_contig149513.3311.1|Name=mRNA_H-elongata_contig149513.3311.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=636bp|location=Sequence derived from alignment at H-elongata_contig149513:689..1474+ (Himanthalia elongata Himel1 dioecious)
ATGGAAGAGGACCGACAGCGAGAAATTGCCGCCGAAAACGATTCTCTCAT
GCACCGACTAGCGGGTATCATGAAGGAGGATCGGGGGGCTCTCGCACAGA
GGTACTCCCACCTGTCGGTGGAATGTCGGGCGAACTTTAGAAGGAAAAAA
ATGCTCGAGCTCCAGATGGAAGAGGACCGACAGCGAGAAATTGCCGCCGA
AAACGATTCTCTCATGCACCGACTAGCGGGTATCATGAAGGAGGATCGGG
GGGCTCTCGCACAGAGGTACTCCCACCTGTCGGTGGAATGTCGGGCGAAC
TTTAGAAGGAAAAAAATGCTCGAGCTCCAGAATCGACGACTCGCACGAGC
GATCAGGAAGCAAAAGCCTGTTTACGACAGATCGGAGATGGGGAAAGACG
AAGACAAGCGACAAGCTCTGCTGAAGGCCATGTCTCGGGCGCAACGCCGG
GAAGAAAGGATTGCCGCATTCGCCACGGCCTCGAATCGACGACTCGCACG
AGCGATCAGGAAGCAAAAGCCTGTTTACGACAGATCGGAGATGGGGAAAG
ACGAAGACAAGCGACAAGCTCTGCTGAAGGCCATGTCTCGGGCGCAACGC
CGGGAAGAAAGGATTGCCGCATTCGCCACGGCCTCG
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