mRNA_H-elongata_contig14938.3307.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig14938.3307.1
Unique NamemRNA_H-elongata_contig14938.3307.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig14938.3307.1 vs. uniprot
Match: D7FPF1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPF1_ECTSI)

HSP 1 Score: 345 bits (884), Expect = 7.530e-117
Identity = 178/224 (79.46%), Postives = 196/224 (87.50%), Query Frame = 1
Query:   31 VQRGLAVEPRNVDLKKNLKEIEELIRADKVSQLVTQAKSQLKTGDYGGAVKTCDAGMRLDAGNSDLQTVLDRAKPRFEAAERARRSGLSGTELLKEKGDDFYKKASFEDAISKYTECLNRLPDKRSPLAIKCYSNRAACYKQLSNFDATVEDTTAVIEVEPNNVKALVRRAQAFEAIERYRFALQDVRTVLSMPPDQVGAANLSLANGMQHRLKRVVQQLKNAS 702
            ++RGL VEPRN DLKKNLKEI+ELIR +KVSQ V QA++QLK GDYG A+K  +AGMRLDAGN DLQ V DRAKP+FEAAER+R+SGLS T LLKEKGDDFY+KASFEDAI KYTECL+ LPDKRS LAIKCYSNR+ACYKQLSNFDATVEDTTAV+EVEP NVKALVRRA        YRFALQDVRTVL+MP D+VG+ANLSLANGMQHRL RVVQQLKNAS
Sbjct:   97 IKRGLCVEPRNADLKKNLKEIDELIRGEKVSQFVAQAEAQLKAGDYGAAMKAVEAGMRLDAGNKDLQAVQDRAKPKFEAAERSRKSGLSSTALLKEKGDDFYRKASFEDAIVKYTECLDSLPDKRSELAIKCYSNRSACYKQLSNFDATVEDTTAVLEVEPENVKALVRRA--------YRFALQDVRTVLTMPQDKVGSANLSLANGMQHRLNRVVQQLKNAS 312          
BLAST of mRNA_H-elongata_contig14938.3307.1 vs. uniprot
Match: A0A836CLV7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLV7_9STRA)

HSP 1 Score: 336 bits (861), Expect = 3.080e-113
Identity = 166/225 (73.78%), Postives = 198/225 (88.00%), Query Frame = 1
Query:   28 SVQRGLAVEPRNVDLKKNLKEIEELIRADKVSQLVTQAKSQLKTGDYGGAVKTCDAGMRLDAGNSDLQTVLDRAKPRFEAAERARRSGLSGTELLKEKGDDFYKKASFEDAISKYTECLNRLPDKRSPLAIKCYSNRAACYKQLSNFDATVEDTTAVIEVEPNNVKALVRRAQAFEAIERYRFALQDVRTVLSMPPDQVGAANLSLANGMQHRLKRVVQQLKNAS 702
            ++ RGLAVEPRN DLKKNLKEI+EL+RADKV++L+ QA++ LK GDYG AVK CD+ +RLDAGNSD+Q +L  A+P+FEA E+AR+SGLS TE LKE+GDDFYK+A FEDAI KYT+C++ L D+   LA+KC+SNR+ACYKQLSNFD  +EDT+AV+EVEP NVKALVRRAQAFEAIERYR+ALQDVRTVL+MPPDQVGAAN+SLANGMQHRL RVVQQLK  S
Sbjct:   96 TLNRGLAVEPRNADLKKNLKEIDELLRADKVAKLIGQAETALKLGDYGDAVKLCDSALRLDAGNSDVQRILRVAQPKFEAQEKARKSGLSRTEHLKEEGDDFYKRAQFEDAIKKYTQCIDALGDRHHALALKCFSNRSACYKQLSNFDGVIEDTSAVLEVEPGNVKALVRRAQAFEAIERYRYALQDVRTVLAMPPDQVGAANISLANGMQHRLNRVVQQLKQDS 320          
BLAST of mRNA_H-elongata_contig14938.3307.1 vs. uniprot
Match: A0A6V1KEM3_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1KEM3_HETAK)

HSP 1 Score: 285 bits (730), Expect = 2.350e-93
Identity = 144/225 (64.00%), Postives = 179/225 (79.56%), Query Frame = 1
Query:   28 SVQRGLAVEPRNVDLKKNLKEIEELIRADKVSQLVTQAKSQLKTGDYGGAVKTCDAGMRLDAGNSDLQTVLDRAKPRFEAAERARRSGLSGTELLKEKGDDFYKKASFEDAISKYTECLNRLPDKRSPLAIKCYSNRAACYKQLSNFDATVEDTTAVIEVEPNNVKALVRRAQAFEAIERYRFALQDVRTVLSMPPDQVGAANLSLANGMQHRLKRVVQQLKNAS 702
            ++++GLA++P+N DLKK + ++EE IR  KV   + QA++  K GDYG AV++ + G+RLDAGNS L +++DR +P +EA E++RR+GLS TE LKE+GDD YK A+FE AI KYT+CL+ L DK S LAIKCYSNR+ACYKQLSNFD  + D T VIE +P NVKALVRRAQAFEA ERYRFALQDVRTVL+ P + VG AN  LANGMQHRL RVVQQLK+AS
Sbjct:   96 TLRQGLAIQPQNADLKKLVSDVEEEIRLKKVETFLQQAQAHNKAGDYGAAVRSLENGLRLDAGNSQLTSLMDRVRPLWEAEEKSRRAGLSRTEQLKEQGDDCYKAANFEGAIQKYTQCLDALSDKSSELAIKCYSNRSACYKQLSNFDGVISDCTMVIEAQPENVKALVRRAQAFEACERYRFALQDVRTVLAQPFELVGQANYQLANGMQHRLNRVVQQLKSAS 320          
BLAST of mRNA_H-elongata_contig14938.3307.1 vs. uniprot
Match: A0A7S2DVE1_9STRA (Hypothetical protein n=2 Tax=Lithodesmiaceae TaxID=49247 RepID=A0A7S2DVE1_9STRA)

HSP 1 Score: 264 bits (674), Expect = 8.100e-85
Identity = 132/231 (57.14%), Postives = 177/231 (76.62%), Query Frame = 1
Query:   10 LSFCHFSVQRGLAVEPRNVDLKKNLKEIEELIRADKVSQLVTQAKSQLKTGDYGGAVKTCDAGMRLDAGNSDLQTVLDRAKPRFEAAERARRSGLSGTELLKEKGDDFYKKASFEDAISKYTECLNRLPDK---RSPLAIKCYSNRAACYKQLSNFDATVEDTTAVIEVEPNNVKALVRRAQAFEAIERYRFALQDVRTVLSMPPDQVGAANLSLANGMQHRLKRVVQQLK 693
            L+ C  +++ GLAV+  N DLK+  KE++EL+R ++V+   ++A+ Q+++GD  GA KT +   R+DAGN D++ ++ R KP++EA E  R++GLS TE+ KE+GD+ YKKA FE AI +YT+C++ L      +S LA+K YSNRAACYKQ+SNFD TVED TAV+EV+P NVKAL+RRAQA E +ERYRFALQD++TVLSMP D+VG AN  LANGMQHRL R VQQLK
Sbjct:   91 LAGCIKTLESGLAVQSSNPDLKRMKKEVQELLRGEQVAGYCSRAEEQMQSGDIAGAYKTLELASRIDAGNPDIERMMSRVKPKYEAMEARRKAGLSATEIYKERGDERYKKADFEGAIEEYTKCIDTLRADGKGQSELAMKAYSNRAACYKQISNFDGTVEDCTAVLEVDPENVKALIRRAQALEGLERYRFALQDIKTVLSMPFDKVGKANFDLANGMQHRLNRTVQQLK 321          
BLAST of mRNA_H-elongata_contig14938.3307.1 vs. uniprot
Match: A0A7S3P6E4_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3P6E4_9STRA)

HSP 1 Score: 259 bits (663), Expect = 3.860e-83
Identity = 132/231 (57.14%), Postives = 170/231 (73.59%), Query Frame = 1
Query:   10 LSFCHFSVQRGLAVEPRNVDLKKNLKEIEELIRADKVSQLVTQAKSQLKTGDYGGAVKTCDAGMRLDAGNSDLQTVLDRAKPRFEAAERARRSGLSGTELLKEKGDDFYKKASFEDAISKYTECLNRLPDKR---SPLAIKCYSNRAACYKQLSNFDATVEDTTAVIEVEPNNVKALVRRAQAFEAIERYRFALQDVRTVLSMPPDQVGAANLSLANGMQHRLKRVVQQLK 693
            L  C  +++ GLA+E  N DLKK  K+++E++R ++V+    QA+ Q + G  G A+KT +   RLDAGN  +Q +  + KP F+  E+AR++ LSG EL KEKGD+ YK A FE+AI++YT+CL +L  K    SPLA+K YSNRAACYKQ+SNFD T+ D TAV+EVEP+NVKAL+RRAQAFE +ERYRFALQDV+TVL MP  QVG AN  L NGMQHRL+R V QLK
Sbjct:   90 LDGCTKTLESGLAIEASNPDLKKMKKDVQEMLRQEQVAGYAKQAEEQFRGGQIGEAMKTLELASRLDAGNPTIQALQAKVKPAFDKQEKARKAKLSGAELYKEKGDECYKNAQFENAIAEYTKCLKQLESKGQQGSPLAVKTYSNRAACYKQISNFDGTIADCTAVLEVEPDNVKALIRRAQAFEGVERYRFALQDVKTVLQMPSAQVGKANFDLCNGMQHRLQRTVNQLK 320          
BLAST of mRNA_H-elongata_contig14938.3307.1 vs. uniprot
Match: A0A7S1CX05_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1CX05_CYCTE)

HSP 1 Score: 256 bits (653), Expect = 1.180e-81
Identity = 130/232 (56.03%), Postives = 170/232 (73.28%), Query Frame = 1
Query:    7 RLSFCHFSVQRGLAVEPRNVDLKKNLKEIEELIRADKVSQLVTQAKSQLKTGDYGGAVKTCDAGMRLDAGNSDLQTVLDRAKPRFEAAERARRSGLSGTELLKEKGDDFYKKASFEDAISKYTECLNRLPDK---RSPLAIKCYSNRAACYKQLSNFDATVEDTTAVIEVEPNNVKALVRRAQAFEAIERYRFALQDVRTVLSMPPDQVGAANLSLANGMQHRLKRVVQQLK 693
            +L+ C  +++ GLAV+  N DLK+  KEI+E  R D+V     +A+ Q++ GD  GA+KT +   RLDAGN  ++ +  R +P+F+  ER R+S LS TEL KEKGD++YK A+FE AI +YT+CL+ L  +    SPLA+K YSNRAACYKQ+SNFD T+ D T V+E+EP NVKAL+RRAQAFE +ERYRFALQD++TVLSMP  +VG +N  L NGMQHRL R VQQLK
Sbjct:   89 QLAECIKTLESGLAVQSSNPDLKRMKKEIQEQQRHDQVKAYCAKAEEQMQNGDIAGAMKTLELASRLDAGNPSVEAMKKRVQPKFDQMERQRKSSLSATELYKEKGDEYYKAANFELAIEEYTKCLDNLQKEGKAESPLALKAYSNRAACYKQISNFDGTISDCTMVLEIEPENVKALIRRAQAFEGVERYRFALQDIKTVLSMPFAKVGKSNFDLCNGMQHRLNRTVQQLK 320          
BLAST of mRNA_H-elongata_contig14938.3307.1 vs. uniprot
Match: A0A7S4K7I6_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4K7I6_9STRA)

HSP 1 Score: 249 bits (637), Expect = 1.240e-78
Identity = 125/234 (53.42%), Postives = 172/234 (73.50%), Query Frame = 1
Query:    1 MPRLSFCHFSVQRGLAVEPRNVDLKKNLKEIEELIRADKVSQLVTQAKSQLKTGDYGGAVKTCDAGMRLDAGNSDLQTVLDRAKPRFEAAERARRSGLSGTELLKEKGDDFYKKASFEDAISKYTECLNRLPDK---RSPLAIKCYSNRAACYKQLSNFDATVEDTTAVIEVEPNNVKALVRRAQAFEAIERYRFALQDVRTVLSMPPDQVGAANLSLANGMQHRLKRVVQQLK 693
            M  ++ C  +++ GLAV+  N DLKK  K+++EL R ++V+    +A+ Q+++GD  GA KT +   RLDAGN D++ ++ + KP+FEA E  R++GLS TE+ KE+GD+ YK A+FE A+  Y +C+  L  +   +S LA+K +SNRAACYKQ+SNFD  +ED TAV+E+EP NVKAL+RRAQAFE +ERYRFALQDV+TVL+MP D+VG +N  L N MQHRL R VQQLK
Sbjct:  133 MNDIAGCIKTLESGLAVQSSNPDLKKMKKDVQELQRGEQVASYCRKAEEQMQSGDIPGAYKTLELASRLDAGNPDIERMMSKVKPKFEAMESRRKAGLSSTEIFKERGDEAYKSANFEGAVELYGKCIEGLKREGKDQSELALKAHSNRAACYKQISNFDGVIEDCTAVLEIEPENVKALIRRAQAFEGVERYRFALQDVKTVLAMPFDKVGKSNFDLCNMMQHRLNRTVQQLK 366          
BLAST of mRNA_H-elongata_contig14938.3307.1 vs. uniprot
Match: A0A7S0ACZ8_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0ACZ8_9STRA)

HSP 1 Score: 245 bits (626), Expect = 1.570e-78
Identity = 127/234 (54.27%), Postives = 167/234 (71.37%), Query Frame = 1
Query:    1 MPRLSFCHFSVQRGLAVEPRNVDLKKNLKEIEELIRADKVSQLVTQAKSQLKTGDYGGAVKTCDAGMRLDAGNSDLQTVLDRAKPRFEAAERARRSGLSGTELLKEKGDDFYKKASFEDAISKYTECLNRLPDKR---SPLAIKCYSNRAACYKQLSNFDATVEDTTAVIEVEPNNVKALVRRAQAFEAIERYRFALQDVRTVLSMPPDQVGAANLSLANGMQHRLKRVVQQLK 693
            M  L  C  +++ GLA++  N DLKK  K+I EL R ++V+    +A  Q++ GD  GA KT +   RLDAGN D++ ++ + KPR+E  E  R++GLSG E  KEKGD+ YK A+FE A+ +YT+CLN L  +    S LA+K +SNRAACYKQ+SNFD T+ED TAV+E++P+NVKAL+RRAQAFE +ERYRFALQDV+ VLSMP  +VG  N  L N MQHRL+R V QLK
Sbjct:   17 MNDLDGCIKTLESGLAIQSSNPDLKKMKKDIAELQRGEQVASYCRKADEQMQGGDIAGAYKTLELASRLDAGNPDIERMMSKVKPRYEKMEAQRKAGLSGAEAHKEKGDEKYKNANFEGAVEEYTKCLNDLKKEGKELSELALKAHSNRAACYKQISNFDGTIEDCTAVLEIDPDNVKALIRRAQAFEGMERYRFALQDVKQVLSMPYHKVGKQNFELCNMMQHRLQRTVNQLK 250          
BLAST of mRNA_H-elongata_contig14938.3307.1 vs. uniprot
Match: A0A7S1VMY9_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VMY9_9STRA)

HSP 1 Score: 247 bits (631), Expect = 2.510e-78
Identity = 128/231 (55.41%), Postives = 165/231 (71.43%), Query Frame = 1
Query:   10 LSFCHFSVQRGLAVEPRNVDLKKNLKEIEELIRADKVSQLVTQAKSQLKTGDYGGAVKTCDAGMRLDAGNSDLQTVLDRAKPRFEAAERARRSGLSGTELLKEKGDDFYKKASFEDAISKYTECLNRLPDK---RSPLAIKCYSNRAACYKQLSNFDATVEDTTAVIEVEPNNVKALVRRAQAFEAIERYRFALQDVRTVLSMPPDQVGAANLSLANGMQHRLKRVVQQLK 693
            L  C  +++ GL V+  N DLK+  KEI+E  R  +V    T+A+ Q++ GD  G++KT D   RLDAGN  L+ ++ + KP++EA E  R++ LSG EL KEKGD+ YK A+FE AI+ Y++ L+ L +     SP+A+K YSNRAACYKQ+SNFD T+ D TAV+EVEP NVKAL+RRAQAFE +ERYRFALQDV+TVL MP  +VG AN  L NGMQHRL R V QLK
Sbjct:   90 LPACIKTLENGLGVQSTNPDLKRMKKEIQESQRQAQVKAYCTKAEEQMQNGDIAGSMKTLDLASRLDAGNPQLEAMIGKVKPKYEAMEAKRKANLSGPELWKEKGDEEYKAANFEGAITHYSKALSALENSGKASSPIALKAYSNRAACYKQISNFDGTISDCTAVLEVEPENVKALIRRAQAFEGVERYRFALQDVKTVLQMPFHKVGKANFDLCNGMQHRLNRTVAQLK 320          
BLAST of mRNA_H-elongata_contig14938.3307.1 vs. uniprot
Match: A0A7S1BD40_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BD40_9STRA)

HSP 1 Score: 246 bits (627), Expect = 8.920e-78
Identity = 125/222 (56.31%), Postives = 161/222 (72.52%), Query Frame = 1
Query:   28 SVQRGLAVEPRNVDLKKNLKEIEELIRADKVSQLVTQAKSQLKTGDYGGAVKTCDAGMRLDAGNSDLQTVLDRAKPRFEAAERARRSGLSGTELLKEKGDDFYKKASFEDAISKYTECLNRLPDKRSPLAIKCYSNRAACYKQLSNFDATVEDTTAVIEVEPNNVKALVRRAQAFEAIERYRFALQDVRTVLSMPPDQVGAANLSLANGMQHRLKRVVQQLK 693
            +++ GL  +  N DLKK   ++ E  RADKVS    +A  Q+  GD  GA KT +   RL AGN +++ ++ + +PR+EA ER R++GLSGTE LKEKGD+ YK A FE+A+  Y++CL+ L +  S LAIKC SNRAACYKQ+SNFD T+ D T V+EVEP NVKALVRRAQAFEA+E+YR+ALQDV+ VLSMP + +G  N  L NG+QHRL RVV QLK
Sbjct:   96 TLEEGLVYDANNKDLKKMKADLVEKQRADKVSSYCRKADEQMANGDIPGAYKTLELASRLGAGNVEIERMMSKVRPRYEAIERKRKAGLSGTEGLKEKGDEAYKAAQFENAVCFYSKCLDSLGEFSSSLAIKCLSNRAACYKQISNFDGTISDCTYVLEVEPENVKALVRRAQAFEAVEKYRYALQDVKQVLSMPFNSIGRVNYELCNGLQHRLNRVVAQLK 317          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig14938.3307.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FPF1_ECTSI7.530e-11779.46Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CLV7_9STRA3.080e-11373.78Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6V1KEM3_HETAK2.350e-9364.00Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2DVE1_9STRA8.100e-8557.14Hypothetical protein n=2 Tax=Lithodesmiaceae TaxID... [more]
A0A7S3P6E4_9STRA3.860e-8357.14Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
A0A7S1CX05_CYCTE1.180e-8156.03Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
A0A7S4K7I6_9STRA1.240e-7853.42Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A7S0ACZ8_9STRA1.570e-7854.27Hypothetical protein n=1 Tax=Minutocellus polymorp... [more]
A0A7S1VMY9_9STRA2.510e-7855.41Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A7S1BD40_9STRA8.920e-7856.31Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig14938contigH-elongata_contig14938:210..2380 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score347.8
Seed ortholog evalue3.9e-93
Seed eggNOG ortholog2880.D7FPF1
KEGG koko:K09553
KEGG Pathwayko05020,map05020
EggNOG free text desc.positive regulation of catalytic activity in other organism involved in symbiotic interaction
EggNOG OGsCOG0457@1,KOG0548@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03110
Hectar predicted targeting categoryother localisation
Exons4
Model size705
Cds size705
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig14938.3307.1prot_H-elongata_contig14938.3307.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig14938 210..2380 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929883.804746-CDS-H-elongata_contig14938:209..3261622929883.804746-CDS-H-elongata_contig14938:209..326Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14938 210..326 +
1691679194.592527-CDS-H-elongata_contig14938:209..3261691679194.592527-CDS-H-elongata_contig14938:209..326Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14938 210..326 +
1622929883.8155475-CDS-H-elongata_contig14938:819..10561622929883.8155475-CDS-H-elongata_contig14938:819..1056Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14938 820..1056 +
1691679194.6107311-CDS-H-elongata_contig14938:819..10561691679194.6107311-CDS-H-elongata_contig14938:819..1056Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14938 820..1056 +
1622929883.8257935-CDS-H-elongata_contig14938:1488..17001622929883.8257935-CDS-H-elongata_contig14938:1488..1700Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14938 1489..1700 +
1691679194.6188295-CDS-H-elongata_contig14938:1488..17001691679194.6188295-CDS-H-elongata_contig14938:1488..1700Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14938 1489..1700 +
1622929883.8384094-CDS-H-elongata_contig14938:2241..23801622929883.8384094-CDS-H-elongata_contig14938:2241..2380Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14938 2242..2380 +
1691679194.6265712-CDS-H-elongata_contig14938:2241..23801691679194.6265712-CDS-H-elongata_contig14938:2241..2380Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14938 2242..2380 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig14938.3307.1

>prot_H-elongata_contig14938.3307.1 ID=prot_H-elongata_contig14938.3307.1|Name=mRNA_H-elongata_contig14938.3307.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=235bp
MPRLSFCHFSVQRGLAVEPRNVDLKKNLKEIEELIRADKVSQLVTQAKSQ
LKTGDYGGAVKTCDAGMRLDAGNSDLQTVLDRAKPRFEAAERARRSGLSG
TELLKEKGDDFYKKASFEDAISKYTECLNRLPDKRSPLAIKCYSNRAACY
KQLSNFDATVEDTTAVIEVEPNNVKALVRRAQAFEAIERYRFALQDVRTV
LSMPPDQVGAANLSLANGMQHRLKRVVQQLKNAS*
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mRNA from alignment at H-elongata_contig14938:210..2380+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig14938.3307.1 ID=mRNA_H-elongata_contig14938.3307.1|Name=mRNA_H-elongata_contig14938.3307.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2171bp|location=Sequence derived from alignment at H-elongata_contig14938:210..2380+ (Himanthalia elongata Himel1 dioecious)
ATGCCACGACTTTCCTTCTGCCATTTTTCCGTGCAGCGTGGATTGGCCGT GGAGCCTCGCAATGTGGACCTCAAGAAGAATCTGAAGGAAATCGAAGAAC TCATCAGAGCGGACAAGGTGGGTTAGGGTGTGGAGGTGTCATGGAGGCAA TCAAAGGTCGCGAGAAAAACATTCCGCGAAAATTCTTGTGTCTTGAGAAG AATGATGTATTCGTGAGTACCCGCTCTCGATGCGCCGGCAGGGTATATAT ATATATATTTATATACTTGTAGGGTGTTGGCTACAGCGACAACTGTTGCG CCAAACTCTCGACATCGGTAGAGCCTTGTATTCAAGAAACACCGTCTTGA ATATGAGAAACTCACAGCAAAGGTGTGAGATAGTCTATTGACGGGGCATT TGGGCCCGAAGGTCAGCTCTCCCTCTTTTGTGTTGGGTTATTAATGGAAC TTCAAAAATCGAAGATCGTTGCCGCACACGAGATAATATTCTTGTGTCGA TCTCTCCCGCAACCTACGTGCCCTGCTGAATCCTCTTTAGTTGAGCTCAC GTCCCGCACCGTCTTTCCCATTGCCTTTCCATCACGTTTCCACTTGTCCC TCTGATACAGGTGTCCCAGCTTGTTACTCAAGCGAAGAGCCAGCTCAAGA CTGGGGACTATGGCGGCGCCGTCAAGACATGCGACGCGGGTATGCGCCTC GACGCGGGCAACAGCGATCTCCAGACCGTGCTTGACCGCGCCAAACCCAG GTTCGAGGCGGCGGAGCGAGCTCGGCGATCCGGTCTGAGCGGGACAGAGC TGCTCAAGGAGAAAGGGGACGACTTTTACAAGAAGGCCTCTTTCGAGGTT TGTGTGCGACTCATTACGTCCAGAGGGTATAGAAAACAAACTAATTAAAA TATTTTCTCGCATATATTCATATATTATGTACCGATATATATCAGGCTGC TCGTTGAAAAGGCGGTGGCTTTGGATCTACGTGACTGATAATACTGCATT GAAATGTGTGTTTTTTTGCTTCCCGTGCCCGGTGGTTTTGCGTTGCCGTG GACGGGGGCGTAAGTAAGGTCACTCTCTCTCTCTCTCGCTCAGGCTCGCA CGTGTTTTTTGTGATGCCTTAAATCGGGGAACTCTGCAGTCTCTATCCTT TCCCGGAGGGCAGCGCGTGGCAACAGACGATCGACGCTTTACTTGAACGT GAGACGAAAAAAATTAATTGTTGGTCCGTCGCGTACCATCACCGGTTGTG TTGGGGGGGGGGGGATGCGGGTCGGGCAGGATGCGATTTCGAAGTACACG GAGTGCCTTAACCGGCTTCCGGACAAGAGAAGCCCCTTGGCGATCAAGTG CTACAGCAACCGCGCCGCCTGCTACAAGCAGCTCTCAAACTTCGATGCGA CCGTGGAAGACACGACCGCGGTGATCGAGGTGGAACCCAACAACGTGAAG GCGCTCGTGAGGAGAGCCCAAGCCTTCGAAGCCATCGAAAGGTAAGAGAA GCCGGTAAATATAGCGGGGAGGAGGAGGGGGGGGTCGTTTATCGATTCGG GAGAGAGTGCACCAGCGAAACACGCTGGTCCCAAGGGGGGACGGGACGCG GGGCGATCTCCCGACAAGGCCAAGAAATTGATTTGAGATGGTACTATATG AGATAACAGGGATGTCAAGAGGAAGCTCTCGAAAAGAAACCGCAGGGCCC ACCCATGGGGAAGGGGGGAGGGTGTCGAGATAATCGCTCCCCGACGACGC TCGGTAGGATCGACGAACGATGATAATAAAAGTAAAATATCAGCGCGAGA TTGCGGATGCTTTTCGTTTAGGCTACCCACCAAAAACACAACATTTTCCC TTTTGCGCCTTTCATTCTCCCCCCGATTGCTAAAATTGTTGGCTGCCCTG CCCACGGGCACCAACGAAGTTAAGTATTTCGTACTGGATACTAACCTGCG TATATTTTAACCCTCCCCAACCCCGCTCCCCCCCCCCCTTCGCCTCGCCT CCTTATTGTATTTGGTGGTTTGTTTCCCATAGATACCGCTTCGCCCTGCA GGACGTCCGCACTGTCTTGTCGATGCCCCCAGACCAAGTCGGAGCGGCAA ACCTCTCCCTGGCCAACGGAATGCAGCACCGCCTCAAGAGGGTAGTCCAG CAACTTAAGAACGCCAGCTGA
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Coding sequence (CDS) from alignment at H-elongata_contig14938:210..2380+

>mRNA_H-elongata_contig14938.3307.1 ID=mRNA_H-elongata_contig14938.3307.1|Name=mRNA_H-elongata_contig14938.3307.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1410bp|location=Sequence derived from alignment at H-elongata_contig14938:210..2380+ (Himanthalia elongata Himel1 dioecious)
ATGCCACGACTTTCCTTCTGCCATTTTTCCGTGCAGCGTGGATTGGCCGT
GGAGCCTCGCAATGTGGACCTCAAGAAGAATCTGAAGGAAATCGAAGAAC
TCATCAGAGCGGACAAGATGCCACGACTTTCCTTCTGCCATTTTTCCGTG
CAGCGTGGATTGGCCGTGGAGCCTCGCAATGTGGACCTCAAGAAGAATCT
GAAGGAAATCGAAGAACTCATCAGAGCGGACAAGGTGTCCCAGCTTGTTA
CTCAAGCGAAGAGCCAGCTCAAGACTGGGGACTATGGCGGCGCCGTCAAG
ACATGCGACGCGGGTATGCGCCTCGACGCGGGCAACAGCGATCTCCAGAC
CGTGCTTGACCGCGCCAAACCCAGGTTCGAGGCGGCGGAGCGAGCTCGGC
GATCCGGTCTGAGCGGGACAGAGCTGCTCAAGGAGAAAGGGGACGACTTT
TACAAGAAGGCCTCTTTCGAGGTGTCCCAGCTTGTTACTCAAGCGAAGAG
CCAGCTCAAGACTGGGGACTATGGCGGCGCCGTCAAGACATGCGACGCGG
GTATGCGCCTCGACGCGGGCAACAGCGATCTCCAGACCGTGCTTGACCGC
GCCAAACCCAGGTTCGAGGCGGCGGAGCGAGCTCGGCGATCCGGTCTGAG
CGGGACAGAGCTGCTCAAGGAGAAAGGGGACGACTTTTACAAGAAGGCCT
CTTTCGAGGATGCGATTTCGAAGTACACGGAGTGCCTTAACCGGCTTCCG
GACAAGAGAAGCCCCTTGGCGATCAAGTGCTACAGCAACCGCGCCGCCTG
CTACAAGCAGCTCTCAAACTTCGATGCGACCGTGGAAGACACGACCGCGG
TGATCGAGGTGGAACCCAACAACGTGAAGGCGCTCGTGAGGAGAGCCCAA
GCCTTCGAAGCCATCGAAAGGATGCGATTTCGAAGTACACGGAGTGCCTT
AACCGGCTTCCGGACAAGAGAAGCCCCTTGGCGATCAAGTGCTACAGCAA
CCGCGCCGCCTGCTACAAGCAGCTCTCAAACTTCGATGCGACCGTGGAAG
ACACGACCGCGGTGATCGAGGTGGAACCCAACAACGTGAAGGCGCTCGTG
AGGAGAGCCCAAGCCTTCGAAGCCATCGAAAGATACCGCTTCGCCCTGCA
GGACGTCCGCACTGTCTTGTCGATGCCCCCAGACCAAGTCGGAGCGGCAA
ACCTCTCCCTGGCCAACGGAATGCAGCACCGCCTCAAGAGGGTAGTCCAG
CAACTTAAGAACGCCAGCTGAATACCGCTTCGCCCTGCAGGACGTCCGCA
CTGTCTTGTCGATGCCCCCAGACCAAGTCGGAGCGGCAAACCTCTCCCTG
GCCAACGGAATGCAGCACCGCCTCAAGAGGGTAGTCCAGCAACTTAAGAA
CGCCAGCTGA
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