mRNA_H-elongata_contig149372.3306.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig149372.3306.1 vs. uniprot
Match: D7FTJ6_ECTSI (Oxa1 or Cox18/Oxa2 homolog, mitochondrial integral inner membrane protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTJ6_ECTSI) HSP 1 Score: 159 bits (403), Expect = 5.290e-44 Identity = 74/119 (62.18%), Postives = 91/119 (76.47%), Query Frame = 1
Query: 1 MGLYFPGYATGGLDWMVNLAVPDPTYILPVIACSTMVIMMEVGGDVQAPQPDPSKPPPMNMKNVFRAMSLVFIPVAFNMPAGVLVYWSTNNLFGLLQRGAFGTRAVQQFFGWPLPEDMP 357
MG YFPGY TGGLDWM+NL PDPT+ LP++ +M+++ME+G D+ A P KP N K +FR MS+VF+PVAF+MPAGVLVYW+T N+FG+LQRG F R VQQ GWPLPEDMP
Sbjct: 360 MGTYFPGYMTGGLDWMMNLNAPDPTWTLPILTSGSMILLMELGSDMPAAH-GPDKPN-FNPKVMFRVMSVVFVPVAFSMPAGVLVYWTTTNVFGMLQRGLFEMRPVQQALGWPLPEDMP 476
BLAST of mRNA_H-elongata_contig149372.3306.1 vs. uniprot
Match: A0A507FCF3_9FUNG (Uncharacterized protein n=1 Tax=Chytriomyces confervae TaxID=246404 RepID=A0A507FCF3_9FUNG) HSP 1 Score: 92.4 bits (228), Expect = 1.340e-19 Identity = 51/114 (44.74%), Postives = 69/114 (60.53%), Query Frame = 1
Query: 16 PGYATGGLDWMVNLAVPDPTYILPVIACSTMVIMMEVGGDVQAPQPDPSKPPPMNMKNVFRAMSLVFIPVAFNMPAGVLVYWSTNNLFGLLQRGAFGTRAVQQFFGWPLPEDMP 357
PG+ TGG W +L + DPTYILPV+A TM+++ME G ++QA +PS+ MKN+FR M + FIP MPA V VYW T+N L+Q AV++ G PL + P
Sbjct: 277 PGFTTGGALWFHDLTLMDPTYILPVVASGTMLVVMEYGMEMQAAA-NPSQA--ALMKNLFRFMLVAFIPFTAAMPAAVFVYWVTSNFLTLIQFLVLKNPAVRKALGIPLLKTFP 387
BLAST of mRNA_H-elongata_contig149372.3306.1 vs. uniprot
Match: UPI001F0356C5 (LOW QUALITY PROTEIN: mitochondrial inner membrane protein OXA1L-like n=1 Tax=Xenia sp. Carnegie-2017 TaxID=2897299 RepID=UPI001F0356C5) HSP 1 Score: 86.3 bits (212), Expect = 1.370e-17 Identity = 42/104 (40.38%), Postives = 62/104 (59.62%), Query Frame = 1
Query: 28 TGGLDWMVNLAVPDPTYILPVIACSTMVIMMEVGGDVQAPQPDPSKPPPMNMKNVFRAMSLVFIPVAFNMPAGVLVYWSTNNLFGLLQRGAFGTRAVQQFFGWP 339
TGG+ W +L + DP ++LPV+ ++M++ +E G +V S P N+K VFR M+++ IP+ PA V VYW T+NLF L Q +AV+ FFG P
Sbjct: 165 TGGVLWFTDLTISDPYFLLPVLCSASMLLTIETGAEVGV-----SNPQFKNIKQVFRVMAILMIPMTAKFPAAVFVYWMTSNLFSLCQMLFLRIQAVRNFFGIP 263
BLAST of mRNA_H-elongata_contig149372.3306.1 vs. uniprot
Match: UPI00106C37B6 (mitochondrial inner membrane protein OXA1L-like n=1 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI00106C37B6) HSP 1 Score: 83.6 bits (205), Expect = 1.920e-16 Identity = 39/107 (36.45%), Postives = 61/107 (57.01%), Query Frame = 1
Query: 31 GGLDWMVNLAVPDPTYILPVIACSTMVIMMEVGGDVQAPQPDPSKPPPMNMKNVFRAMSLVFIPVAFNMPAGVLVYWSTNNLFGLLQRGAFGTRAVQQFFGWPLPED 351
GGL W +L +PDP ++LP++ ++M++ +E G + S P N+K VFR M+++ IP+ PA + YW T+N F L Q T V++FFG P +D
Sbjct: 231 GGLLWFQDLTIPDPYFLLPILCSASMLLTIEAGAEAGL-----SNPQFKNIKQVFRVMAILMIPITAKFPAAIFTYWLTSNAFSLGQMYFLRTEVVRRFFGIPKMQD 332
BLAST of mRNA_H-elongata_contig149372.3306.1 vs. uniprot
Match: UPI00026577D6 (mitochondrial inner membrane protein OXA1L n=1 Tax=Galendromus occidentalis TaxID=34638 RepID=UPI00026577D6) HSP 1 Score: 82.8 bits (203), Expect = 3.540e-16 Identity = 42/104 (40.38%), Postives = 57/104 (54.81%), Query Frame = 1
Query: 28 TGGLDWMVNLAVPDPTYILPVIACSTMVIMMEVGGDVQAPQPDPSKPPPMNMKNVFRAMSLVFIPVAFNMPAGVLVYWSTNNLFGLLQRGAFGTRAVQQFFGWP 339
TGGL W +L VPDP Y+LP++ C+T+++M E G D A + D + NMK V RA+ + P PA VL YW+T+N F L Q V+ F P
Sbjct: 245 TGGLYWFSDLTVPDPYYVLPLVTCTTVLVMFETGAD-GATRADNMR----NMKYVLRAVPFLMFPFTMGFPAAVLTYWTTSNFFALAQTTILRRPGVRAMFNIP 343
BLAST of mRNA_H-elongata_contig149372.3306.1 vs. uniprot
Match: A0A7M5XIV3_9CNID (Uncharacterized protein n=1 Tax=Clytia hemisphaerica TaxID=252671 RepID=A0A7M5XIV3_9CNID) HSP 1 Score: 82.4 bits (202), Expect = 5.730e-16 Identity = 37/104 (35.58%), Postives = 59/104 (56.73%), Query Frame = 1
Query: 28 TGGLDWMVNLAVPDPTYILPVIACSTMVIMMEVGGDVQAPQPDPSKPPPMNMKNVFRAMSLVFIPVAFNMPAGVLVYWSTNNLFGLLQRGAFGTRAVQQFFGWP 339
TGG+ W +L DP +ILP++ TM+ +E G ++ D +K MKNVFR M +V +P+ ++ P + YW T+N+ L+Q G V+++FG P
Sbjct: 292 TGGVLWFPDLTAADPYFILPLLCAGTMLATIETGAEMGMQANDQAK----TMKNVFRGMCVVMVPLTYHFPTAIFTYWFTSNILSLVQVGVMRVPGVKEYFGIP 391
BLAST of mRNA_H-elongata_contig149372.3306.1 vs. uniprot
Match: A9UQR4_MONBE (Uncharacterized protein (Fragment) n=1 Tax=Monosiga brevicollis TaxID=81824 RepID=A9UQR4_MONBE) HSP 1 Score: 79.0 bits (193), Expect = 1.720e-15 Identity = 41/104 (39.42%), Postives = 57/104 (54.81%), Query Frame = 1
Query: 28 TGGLDWMVNLAVPDPTYILPVIACSTMVIMMEVGGDVQAPQPDPSKPPPMNMKNVFRAMSLVFIPVAFNMPAGVLVYWSTNNLFGLLQRGAFGTRAVQQFFGWP 339
TGGL W +L DP Y+LPVIA +TM+ +E G + K + MKNVFR +S+V +PV N+P + VYW T N+F L Q +++ G P
Sbjct: 134 TGGLLWFTDLTAADPYYVLPVIASATMLATIEFGSEGV-------KQNNVMMKNVFRGLSIVLLPVTINLPTAIFVYWCTANMFSLSQMLMLKIPGLKKSLGIP 230
BLAST of mRNA_H-elongata_contig149372.3306.1 vs. uniprot
Match: A0A4V1IU23_9FUNG (Uncharacterized protein (Fragment) n=2 Tax=Caulochytrium protostelioides TaxID=1555241 RepID=A0A4V1IU23_9FUNG) HSP 1 Score: 79.0 bits (193), Expect = 2.140e-15 Identity = 43/108 (39.81%), Postives = 59/108 (54.63%), Query Frame = 1
Query: 16 PGYATGGLDWMVNLAVPDPTYILPVIACSTMVIMMEVGGDVQAPQPDPSKPPPMNMKNVFRAMSLVFIPVAFNMPAGVLVYWSTNNLFGLLQRGAFGTRAVQQFFGWP 339
PG ATGG W +L + DPTY+LPV+A STM ++ME+ + S MKN+ R L+ + V ++ PAGV VYW T N F LLQ +V++ P
Sbjct: 146 PGLATGGTAWFTDLTLADPTYVLPVVASSTMWLVMELNAENSPTDQMRSTA----MKNLMRGGLLLSLFVTYHFPAGVFVYWVTANAFSLLQTWVLHVPSVRRMLEIP 249
BLAST of mRNA_H-elongata_contig149372.3306.1 vs. uniprot
Match: A0A6J2RIB6_COTGO (mitochondrial inner membrane protein OXA1L n=1 Tax=Cottoperca gobio TaxID=56716 RepID=A0A6J2RIB6_COTGO) HSP 1 Score: 78.2 bits (191), Expect = 1.870e-14 Identity = 39/109 (35.78%), Postives = 55/109 (50.46%), Query Frame = 1
Query: 16 PGYATGGLDWMVNLAVPDPTYILPVIACSTMVIMMEVGGDVQAPQPDPSKPPPMNMKNVFRAMSLVFIPVAFNMPAGVLVYWSTNNLFGLLQRGAFGTRAVQQFFGWPL 342
P TGGL W +L DP Y+LP++ TM ++E+G + P+ NMKNVFR M V +P+ N P V YW T+N L Q F +++ G P+
Sbjct: 323 PSMETGGLLWFTDLTAADPFYVLPLVVTGTMFFILELGAESGVDNPNLR-----NMKNVFRVMPFVILPLTINFPTAVFTYWLTSNCISLGQVFLFKHPLIREKLGIPV 426
BLAST of mRNA_H-elongata_contig149372.3306.1 vs. uniprot
Match: A0A0L0HN09_SPIPD (YidC/Oxa1 family membrane protein insertase n=2 Tax=Spizellomyces TaxID=4815 RepID=A0A0L0HN09_SPIPD) HSP 1 Score: 77.0 bits (188), Expect = 4.410e-14 Identity = 37/108 (34.26%), Postives = 58/108 (53.70%), Query Frame = 1
Query: 16 PGYATGGLDWMVNLAVPDPTYILPVIACSTMVIMMEVGGDVQAPQPDPSKPPPMNMKNVFRAMSLVFIPVAFNMPAGVLVYWSTNNLFGLLQRGAFGTRAVQQFFGWP 339
PG+ TGGL W NL++PDPTY+LP++A M+ +ME+G ++ + KNV R + IP +P+ + +YW + N F LLQ A + ++ P
Sbjct: 276 PGFETGGLAWFANLSIPDPTYVLPIVASLGMLAVMELGAEMGT---QVNNAQTATFKNVLRIALIGSIPFTAQLPSAIFMYWISTNAFTLLQTFALKNPSFRRLCNIP 380 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig149372.3306.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig149372.3306.1 >prot_H-elongata_contig149372.3306.1 ID=prot_H-elongata_contig149372.3306.1|Name=mRNA_H-elongata_contig149372.3306.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=119bp MGLYFPGYATGGLDWMVNLAVPDPTYILPVIACSTMVIMMEVGGDVQAPQback to top mRNA from alignment at H-elongata_contig149372:191..1301- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig149372.3306.1 ID=mRNA_H-elongata_contig149372.3306.1|Name=mRNA_H-elongata_contig149372.3306.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1111bp|location=Sequence derived from alignment at H-elongata_contig149372:191..1301- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig149372:191..1301- >mRNA_H-elongata_contig149372.3306.1 ID=mRNA_H-elongata_contig149372.3306.1|Name=mRNA_H-elongata_contig149372.3306.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=714bp|location=Sequence derived from alignment at H-elongata_contig149372:191..1301- (Himanthalia elongata Himel1 dioecious)back to top |