mRNA_H-elongata_contig149372.3306.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig149372.3306.1
Unique NamemRNA_H-elongata_contig149372.3306.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig149372.3306.1 vs. uniprot
Match: D7FTJ6_ECTSI (Oxa1 or Cox18/Oxa2 homolog, mitochondrial integral inner membrane protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTJ6_ECTSI)

HSP 1 Score: 159 bits (403), Expect = 5.290e-44
Identity = 74/119 (62.18%), Postives = 91/119 (76.47%), Query Frame = 1
Query:    1 MGLYFPGYATGGLDWMVNLAVPDPTYILPVIACSTMVIMMEVGGDVQAPQPDPSKPPPMNMKNVFRAMSLVFIPVAFNMPAGVLVYWSTNNLFGLLQRGAFGTRAVQQFFGWPLPEDMP 357
            MG YFPGY TGGLDWM+NL  PDPT+ LP++   +M+++ME+G D+ A    P KP   N K +FR MS+VF+PVAF+MPAGVLVYW+T N+FG+LQRG F  R VQQ  GWPLPEDMP
Sbjct:  360 MGTYFPGYMTGGLDWMMNLNAPDPTWTLPILTSGSMILLMELGSDMPAAH-GPDKPN-FNPKVMFRVMSVVFVPVAFSMPAGVLVYWTTTNVFGMLQRGLFEMRPVQQALGWPLPEDMP 476          
BLAST of mRNA_H-elongata_contig149372.3306.1 vs. uniprot
Match: A0A507FCF3_9FUNG (Uncharacterized protein n=1 Tax=Chytriomyces confervae TaxID=246404 RepID=A0A507FCF3_9FUNG)

HSP 1 Score: 92.4 bits (228), Expect = 1.340e-19
Identity = 51/114 (44.74%), Postives = 69/114 (60.53%), Query Frame = 1
Query:   16 PGYATGGLDWMVNLAVPDPTYILPVIACSTMVIMMEVGGDVQAPQPDPSKPPPMNMKNVFRAMSLVFIPVAFNMPAGVLVYWSTNNLFGLLQRGAFGTRAVQQFFGWPLPEDMP 357
            PG+ TGG  W  +L + DPTYILPV+A  TM+++ME G ++QA   +PS+     MKN+FR M + FIP    MPA V VYW T+N   L+Q       AV++  G PL +  P
Sbjct:  277 PGFTTGGALWFHDLTLMDPTYILPVVASGTMLVVMEYGMEMQAAA-NPSQA--ALMKNLFRFMLVAFIPFTAAMPAAVFVYWVTSNFLTLIQFLVLKNPAVRKALGIPLLKTFP 387          
BLAST of mRNA_H-elongata_contig149372.3306.1 vs. uniprot
Match: UPI001F0356C5 (LOW QUALITY PROTEIN: mitochondrial inner membrane protein OXA1L-like n=1 Tax=Xenia sp. Carnegie-2017 TaxID=2897299 RepID=UPI001F0356C5)

HSP 1 Score: 86.3 bits (212), Expect = 1.370e-17
Identity = 42/104 (40.38%), Postives = 62/104 (59.62%), Query Frame = 1
Query:   28 TGGLDWMVNLAVPDPTYILPVIACSTMVIMMEVGGDVQAPQPDPSKPPPMNMKNVFRAMSLVFIPVAFNMPAGVLVYWSTNNLFGLLQRGAFGTRAVQQFFGWP 339
            TGG+ W  +L + DP ++LPV+  ++M++ +E G +V       S P   N+K VFR M+++ IP+    PA V VYW T+NLF L Q      +AV+ FFG P
Sbjct:  165 TGGVLWFTDLTISDPYFLLPVLCSASMLLTIETGAEVGV-----SNPQFKNIKQVFRVMAILMIPMTAKFPAAVFVYWMTSNLFSLCQMLFLRIQAVRNFFGIP 263          
BLAST of mRNA_H-elongata_contig149372.3306.1 vs. uniprot
Match: UPI00106C37B6 (mitochondrial inner membrane protein OXA1L-like n=1 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI00106C37B6)

HSP 1 Score: 83.6 bits (205), Expect = 1.920e-16
Identity = 39/107 (36.45%), Postives = 61/107 (57.01%), Query Frame = 1
Query:   31 GGLDWMVNLAVPDPTYILPVIACSTMVIMMEVGGDVQAPQPDPSKPPPMNMKNVFRAMSLVFIPVAFNMPAGVLVYWSTNNLFGLLQRGAFGTRAVQQFFGWPLPED 351
            GGL W  +L +PDP ++LP++  ++M++ +E G +        S P   N+K VFR M+++ IP+    PA +  YW T+N F L Q     T  V++FFG P  +D
Sbjct:  231 GGLLWFQDLTIPDPYFLLPILCSASMLLTIEAGAEAGL-----SNPQFKNIKQVFRVMAILMIPITAKFPAAIFTYWLTSNAFSLGQMYFLRTEVVRRFFGIPKMQD 332          
BLAST of mRNA_H-elongata_contig149372.3306.1 vs. uniprot
Match: UPI00026577D6 (mitochondrial inner membrane protein OXA1L n=1 Tax=Galendromus occidentalis TaxID=34638 RepID=UPI00026577D6)

HSP 1 Score: 82.8 bits (203), Expect = 3.540e-16
Identity = 42/104 (40.38%), Postives = 57/104 (54.81%), Query Frame = 1
Query:   28 TGGLDWMVNLAVPDPTYILPVIACSTMVIMMEVGGDVQAPQPDPSKPPPMNMKNVFRAMSLVFIPVAFNMPAGVLVYWSTNNLFGLLQRGAFGTRAVQQFFGWP 339
            TGGL W  +L VPDP Y+LP++ C+T+++M E G D  A + D  +    NMK V RA+  +  P     PA VL YW+T+N F L Q        V+  F  P
Sbjct:  245 TGGLYWFSDLTVPDPYYVLPLVTCTTVLVMFETGAD-GATRADNMR----NMKYVLRAVPFLMFPFTMGFPAAVLTYWTTSNFFALAQTTILRRPGVRAMFNIP 343          
BLAST of mRNA_H-elongata_contig149372.3306.1 vs. uniprot
Match: A0A7M5XIV3_9CNID (Uncharacterized protein n=1 Tax=Clytia hemisphaerica TaxID=252671 RepID=A0A7M5XIV3_9CNID)

HSP 1 Score: 82.4 bits (202), Expect = 5.730e-16
Identity = 37/104 (35.58%), Postives = 59/104 (56.73%), Query Frame = 1
Query:   28 TGGLDWMVNLAVPDPTYILPVIACSTMVIMMEVGGDVQAPQPDPSKPPPMNMKNVFRAMSLVFIPVAFNMPAGVLVYWSTNNLFGLLQRGAFGTRAVQQFFGWP 339
            TGG+ W  +L   DP +ILP++   TM+  +E G ++     D +K     MKNVFR M +V +P+ ++ P  +  YW T+N+  L+Q G      V+++FG P
Sbjct:  292 TGGVLWFPDLTAADPYFILPLLCAGTMLATIETGAEMGMQANDQAK----TMKNVFRGMCVVMVPLTYHFPTAIFTYWFTSNILSLVQVGVMRVPGVKEYFGIP 391          
BLAST of mRNA_H-elongata_contig149372.3306.1 vs. uniprot
Match: A9UQR4_MONBE (Uncharacterized protein (Fragment) n=1 Tax=Monosiga brevicollis TaxID=81824 RepID=A9UQR4_MONBE)

HSP 1 Score: 79.0 bits (193), Expect = 1.720e-15
Identity = 41/104 (39.42%), Postives = 57/104 (54.81%), Query Frame = 1
Query:   28 TGGLDWMVNLAVPDPTYILPVIACSTMVIMMEVGGDVQAPQPDPSKPPPMNMKNVFRAMSLVFIPVAFNMPAGVLVYWSTNNLFGLLQRGAFGTRAVQQFFGWP 339
            TGGL W  +L   DP Y+LPVIA +TM+  +E G +         K   + MKNVFR +S+V +PV  N+P  + VYW T N+F L Q        +++  G P
Sbjct:  134 TGGLLWFTDLTAADPYYVLPVIASATMLATIEFGSEGV-------KQNNVMMKNVFRGLSIVLLPVTINLPTAIFVYWCTANMFSLSQMLMLKIPGLKKSLGIP 230          
BLAST of mRNA_H-elongata_contig149372.3306.1 vs. uniprot
Match: A0A4V1IU23_9FUNG (Uncharacterized protein (Fragment) n=2 Tax=Caulochytrium protostelioides TaxID=1555241 RepID=A0A4V1IU23_9FUNG)

HSP 1 Score: 79.0 bits (193), Expect = 2.140e-15
Identity = 43/108 (39.81%), Postives = 59/108 (54.63%), Query Frame = 1
Query:   16 PGYATGGLDWMVNLAVPDPTYILPVIACSTMVIMMEVGGDVQAPQPDPSKPPPMNMKNVFRAMSLVFIPVAFNMPAGVLVYWSTNNLFGLLQRGAFGTRAVQQFFGWP 339
            PG ATGG  W  +L + DPTY+LPV+A STM ++ME+  +        S      MKN+ R   L+ + V ++ PAGV VYW T N F LLQ       +V++    P
Sbjct:  146 PGLATGGTAWFTDLTLADPTYVLPVVASSTMWLVMELNAENSPTDQMRSTA----MKNLMRGGLLLSLFVTYHFPAGVFVYWVTANAFSLLQTWVLHVPSVRRMLEIP 249          
BLAST of mRNA_H-elongata_contig149372.3306.1 vs. uniprot
Match: A0A6J2RIB6_COTGO (mitochondrial inner membrane protein OXA1L n=1 Tax=Cottoperca gobio TaxID=56716 RepID=A0A6J2RIB6_COTGO)

HSP 1 Score: 78.2 bits (191), Expect = 1.870e-14
Identity = 39/109 (35.78%), Postives = 55/109 (50.46%), Query Frame = 1
Query:   16 PGYATGGLDWMVNLAVPDPTYILPVIACSTMVIMMEVGGDVQAPQPDPSKPPPMNMKNVFRAMSLVFIPVAFNMPAGVLVYWSTNNLFGLLQRGAFGTRAVQQFFGWPL 342
            P   TGGL W  +L   DP Y+LP++   TM  ++E+G +     P+       NMKNVFR M  V +P+  N P  V  YW T+N   L Q   F    +++  G P+
Sbjct:  323 PSMETGGLLWFTDLTAADPFYVLPLVVTGTMFFILELGAESGVDNPNLR-----NMKNVFRVMPFVILPLTINFPTAVFTYWLTSNCISLGQVFLFKHPLIREKLGIPV 426          
BLAST of mRNA_H-elongata_contig149372.3306.1 vs. uniprot
Match: A0A0L0HN09_SPIPD (YidC/Oxa1 family membrane protein insertase n=2 Tax=Spizellomyces TaxID=4815 RepID=A0A0L0HN09_SPIPD)

HSP 1 Score: 77.0 bits (188), Expect = 4.410e-14
Identity = 37/108 (34.26%), Postives = 58/108 (53.70%), Query Frame = 1
Query:   16 PGYATGGLDWMVNLAVPDPTYILPVIACSTMVIMMEVGGDVQAPQPDPSKPPPMNMKNVFRAMSLVFIPVAFNMPAGVLVYWSTNNLFGLLQRGAFGTRAVQQFFGWP 339
            PG+ TGGL W  NL++PDPTY+LP++A   M+ +ME+G ++       +       KNV R   +  IP    +P+ + +YW + N F LLQ  A    + ++    P
Sbjct:  276 PGFETGGLAWFANLSIPDPTYVLPIVASLGMLAVMELGAEMGT---QVNNAQTATFKNVLRIALIGSIPFTAQLPSAIFMYWISTNAFTLLQTFALKNPSFRRLCNIP 380          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig149372.3306.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FTJ6_ECTSI5.290e-4462.18Oxa1 or Cox18/Oxa2 homolog, mitochondrial integral... [more]
A0A507FCF3_9FUNG1.340e-1944.74Uncharacterized protein n=1 Tax=Chytriomyces confe... [more]
UPI001F0356C51.370e-1740.38LOW QUALITY PROTEIN: mitochondrial inner membrane ... [more]
UPI00106C37B61.920e-1636.45mitochondrial inner membrane protein OXA1L-like n=... [more]
UPI00026577D63.540e-1640.38mitochondrial inner membrane protein OXA1L n=1 Tax... [more]
A0A7M5XIV3_9CNID5.730e-1635.58Uncharacterized protein n=1 Tax=Clytia hemisphaeri... [more]
A9UQR4_MONBE1.720e-1539.42Uncharacterized protein (Fragment) n=1 Tax=Monosig... [more]
A0A4V1IU23_9FUNG2.140e-1539.81Uncharacterized protein (Fragment) n=2 Tax=Cauloch... [more]
A0A6J2RIB6_COTGO1.870e-1435.78mitochondrial inner membrane protein OXA1L n=1 Tax... [more]
A0A0L0HN09_SPIPD4.410e-1434.26YidC/Oxa1 family membrane protein insertase n=2 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig149372contigH-elongata_contig149372:191..1301 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score159.1
Seed ortholog evalue1.3e-36
Seed eggNOG ortholog2880.D7FTJ6
KEGG koko:K03217
KEGG TC2.A.9
KEGG Pathwayko02024,ko03060,ko03070,map02024,map03060,map03070
KEGG ModuleM00335
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0016020,GO:0019866,GO:0031090,GO:0031966,GO:0031967,GO:0031975,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464
EggNOG free text desc.membrane insertase activity
EggNOG OGsCOG0706@1,KOG1239@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko02044,ko03029
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionOxa1 or Cox18/Oxa2 homolog, mitochondrial integral inner membrane protein
Ec32 orthologEc-21_001610.1
Exons2
Model size357
Cds size357
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929883.735947-CDS-H-elongata_contig149372:190..4361622929883.735947-CDS-H-elongata_contig149372:190..436Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig149372 191..436 -
1691679194.568868-CDS-H-elongata_contig149372:190..4361691679194.568868-CDS-H-elongata_contig149372:190..436Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig149372 191..436 -
1622929883.7583501-CDS-H-elongata_contig149372:1190..13011622929883.7583501-CDS-H-elongata_contig149372:1190..1301Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig149372 1191..1301 -
1691679194.5801687-CDS-H-elongata_contig149372:1190..13011691679194.5801687-CDS-H-elongata_contig149372:1190..1301Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig149372 1191..1301 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig149372.3306.1prot_H-elongata_contig149372.3306.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig149372 191..1301 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig149372.3306.1

>prot_H-elongata_contig149372.3306.1 ID=prot_H-elongata_contig149372.3306.1|Name=mRNA_H-elongata_contig149372.3306.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=119bp
MGLYFPGYATGGLDWMVNLAVPDPTYILPVIACSTMVIMMEVGGDVQAPQ
PDPSKPPPMNMKNVFRAMSLVFIPVAFNMPAGVLVYWSTNNLFGLLQRGA
FGTRAVQQFFGWPLPEDMP
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mRNA from alignment at H-elongata_contig149372:191..1301-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig149372.3306.1 ID=mRNA_H-elongata_contig149372.3306.1|Name=mRNA_H-elongata_contig149372.3306.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1111bp|location=Sequence derived from alignment at H-elongata_contig149372:191..1301- (Himanthalia elongata Himel1 dioecious)
ATGGGGCTCTACTTTCCGGGCTACGCTACCGGAGGATTGGATTGGATGGT CAATCTCGCGGTTCCTGACCCGACTTACATCCTTCCCGTCATAGCCTGTT CGACGATGGTGGTAAGTCCAGCTCTCATTCTCTGCCATACGATGTAATTA TATAGAGGAAGGCGAGTGGGGGGGGGGAAGCTGTTCGAGTGCCAATTCGA AGAGCTACCACCGGCTCGTCATGCTGTGGCAAATATTCGACTTTTTTGTT TTTCAAATGTTTCCTACCTCACTGGTTGAAAACACATTTTATTGTCTCGA GTGTGTCGAGATCGGCGCGCGTTACTCTCAGGCGGTCGGATCTTCCCTTT CCTCTTGTTGTTTAGCTGAATTGTGACTTTCGAGAGTCATTTGTATCGCG AACGATGCGCGGCAGCAGTGAATTGAACACTAGCGCGATAAAGGGGCGCC GTTTCTTGTTATAATCCACTGCACGTGTATTCCACCACCTTATCCTCGGC TGCAACAAATACCACTTGTATGTGCAACCCCGAGCTTCCAATACCTCGCC GGGTCTTTTTGGACCAAGCATTTGCCCAGTGTCCAAACATTCTTACTGAA GTCGTGAAACAAACCACCCGCGACCTTATATCAAGTCCAACCAACATCAT ATATGTCTCTCTCAACAGAGCAGACGGCTACTATAATATTAATAGTAACA GTAAGAGTAATCTAATCGCAGATACTCTTCATGTGCTTCGTATGAGATGT GCGCCCTTGCTCGCTTTGCCTCGCGAAAAGTGGATAAATTCCGCCAGCGA ATCGCGCGGTACTCGATACCACTCTCCTCTCCTTTCTTTCTCCTTCCCGC CTCGGGGTCGTGCAGATCATGATGGAGGTGGGCGGGGACGTGCAAGCCCC GCAGCCGGACCCTTCCAAGCCACCGCCGATGAACATGAAGAACGTATTTC GCGCCATGAGCCTCGTCTTTATCCCGGTGGCGTTCAACATGCCGGCGGGG GTGCTCGTGTACTGGTCGACGAACAACCTCTTCGGCCTGCTCCAGAGGGG GGCCTTCGGCACCCGGGCCGTCCAGCAGTTCTTCGGGTGGCCTCTCCCCG AAGACATGCCC
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Coding sequence (CDS) from alignment at H-elongata_contig149372:191..1301-

>mRNA_H-elongata_contig149372.3306.1 ID=mRNA_H-elongata_contig149372.3306.1|Name=mRNA_H-elongata_contig149372.3306.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=714bp|location=Sequence derived from alignment at H-elongata_contig149372:191..1301- (Himanthalia elongata Himel1 dioecious)
ATGGGGCTCTACTTTCCGGGCTACGCTACCGGAGGATTGGATTGGATGGT
CAATCTCGCGGTTCCTGACCCGACTTACATCCTTCCCGTCATAGCCTGTT
CGACGATGGTGATGGGGCTCTACTTTCCGGGCTACGCTACCGGAGGATTG
GATTGGATGGTCAATCTCGCGGTTCCTGACCCGACTTACATCCTTCCCGT
CATAGCCTGTTCGACGATGGTGATCATGATGGAGGTGGGCGGGGACGTGC
AAGCCCCGCAGCCGGACCCTTCCAAGCCACCGCCGATGAACATGAAGAAC
GTATTTCGCGCCATGAGCCTCGTCTTTATCCCGGTGGCGTTCAACATGCC
GGCGGGGGTGCTCGTGTACTGGTCGACGAACAACCTCTTCGGCCTGCTCC
AGAGGGGGGCCTTCGGCACCCGGGCCGTCCAGCAGTTCTTCGGGTGGCCT
CTCCCCGAAGACATGCCCATCATGATGGAGGTGGGCGGGGACGTGCAAGC
CCCGCAGCCGGACCCTTCCAAGCCACCGCCGATGAACATGAAGAACGTAT
TTCGCGCCATGAGCCTCGTCTTTATCCCGGTGGCGTTCAACATGCCGGCG
GGGGTGCTCGTGTACTGGTCGACGAACAACCTCTTCGGCCTGCTCCAGAG
GGGGGCCTTCGGCACCCGGGCCGTCCAGCAGTTCTTCGGGTGGCCTCTCC
CCGAAGACATGCCC
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