mRNA_H-elongata_contig149327.3305.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig149327.3305.1
Unique NamemRNA_H-elongata_contig149327.3305.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig149327.3305.1 vs. uniprot
Match: A0A6H5L6G0_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L6G0_9PHAE)

HSP 1 Score: 75.5 bits (184), Expect = 1.210e-14
Identity = 32/53 (60.38%), Postives = 39/53 (73.58%), Query Frame = 1 
Query:    1 DRDTGMNEFR-FKWYSQFFYDISKMGLQKGFGDPCPMHTEYLEYGRDEGLFDF 156
            DR T   + R FKWY++FFYDIS   L+  F DPCPMHTEYL YG+D+G+F F
Sbjct:  348 DRQTTRMDARTFKWYNEFFYDISNTALKAKFDDPCPMHTEYLNYGKDKGIFTF 400
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BLAST of mRNA_H-elongata_contig149327.3305.1 vs. uniprot
Match: A0A7S4C1M6_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4C1M6_CHRCT)

HSP 1 Score: 57.4 bits (137), Expect = 3.220e-8
Identity = 25/49 (51.02%), Postives = 32/49 (65.31%), Query Frame = 1 
Query:   10 TGMNEFRFKWYSQFFYDISKMGLQKGFGDPCPMHTEYLEYGRDEGLFDF 156
            T M EF  +W + +FY  +K+  + GF D  PMHTEYL YGR+ GLF F
Sbjct:  313 TAMKEF--EWRNGWFYRYTKLAQKNGFPDATPMHTEYLRYGRENGLFTF 359
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BLAST of mRNA_H-elongata_contig149327.3305.1 vs. uniprot
Match: A0A1X6NIV9_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NIV9_PORUM)

HSP 1 Score: 54.7 bits (130), Expect = 1.460e-7
Identity = 24/52 (46.15%), Postives = 34/52 (65.38%), Query Frame = 1 
Query:    1 DRDTGMNEFRFKWYSQFFYDISKMGLQKGFGDPCPMHTEYLEYGRDEGLFDF 156
            D  TG+ EF  +W + +FY  S +  +KGF DP PMHT++LE G+  GL D+
Sbjct:  149 DFKTGIKEF--EWRNGYFYRYSMLAREKGFPDPTPMHTDWLEEGKKMGLIDW 198
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BLAST of mRNA_H-elongata_contig149327.3305.1 vs. uniprot
Match: A0A6U2BD26_HEMAN (Hypothetical protein n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A6U2BD26_HEMAN)

HSP 1 Score: 54.7 bits (130), Expect = 2.930e-7
Identity = 21/38 (55.26%), Postives = 27/38 (71.05%), Query Frame = 1 
Query:   31 FKWYSQFFYDISKMGLQKGFGDPCPMHTEYLEYGRDEG 144
            FKW +   Y ISK  +  GF DPC MH+EYL+YG+D+G
Sbjct:  341 FKWRNGVIYAISKQAMDIGFDDPCSMHSEYLQYGKDKG 378
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig149327.3305.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5L6G0_9PHAE1.210e-1460.38Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S4C1M6_CHRCT3.220e-851.02Hypothetical protein n=1 Tax=Chrysotila carterae T... [more]
A0A1X6NIV9_PORUM1.460e-746.15Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
A0A6U2BD26_HEMAN2.930e-755.26Hypothetical protein n=2 Tax=Hemiselmis andersenii... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig149327contigH-elongata_contig149327:118..282 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score74.7
Seed ortholog evalue1.4e-11
Seed eggNOG ortholog2880.D8LT31
EggNOG OGs2BI3D@1,2S1DD@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-08_003940.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size165
Cds size150
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929883.6725008-UTR-H-elongata_contig149327:117..1321622929883.6725008-UTR-H-elongata_contig149327:117..132Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig149327 118..132 +
1691679194.5481758-UTR-H-elongata_contig149327:117..1321691679194.5481758-UTR-H-elongata_contig149327:117..132Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig149327 118..132 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929883.6926987-CDS-H-elongata_contig149327:132..2821622929883.6926987-CDS-H-elongata_contig149327:132..282Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig149327 133..282 +
1691679194.5593648-CDS-H-elongata_contig149327:132..2821691679194.5593648-CDS-H-elongata_contig149327:132..282Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig149327 133..282 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig149327.3305.1prot_H-elongata_contig149327.3305.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig149327 133..282 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig149327.3305.1

>prot_H-elongata_contig149327.3305.1 ID=prot_H-elongata_contig149327.3305.1|Name=mRNA_H-elongata_contig149327.3305.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=50bp
MNEFRFKWYSQFFYDISKMGLQKGFGDPCPMHTEYLEYGRDEGLFDFKF*
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mRNA from alignment at H-elongata_contig149327:118..282+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig149327.3305.1 ID=mRNA_H-elongata_contig149327.3305.1|Name=mRNA_H-elongata_contig149327.3305.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=165bp|location=Sequence derived from alignment at H-elongata_contig149327:118..282+ (Himanthalia elongata Himel1 dioecious)
GACCGGGATACGGGCATGAACGAGTTCAGGTTCAAGTGGTACAGTCAGTT
CTTTTACGACATCTCCAAGATGGGACTCCAGAAAGGCTTCGGAGACCCGT
GCCCGATGCACACGGAGTACCTCGAGTACGGAAGAGACGAAGGGTTGTTC
GATTTCAAATTTTGA
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Coding sequence (CDS) from alignment at H-elongata_contig149327:118..282+

>mRNA_H-elongata_contig149327.3305.1 ID=mRNA_H-elongata_contig149327.3305.1|Name=mRNA_H-elongata_contig149327.3305.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=300bp|location=Sequence derived from alignment at H-elongata_contig149327:118..282+ (Himanthalia elongata Himel1 dioecious)
ATGAACGAGTTCAGGTTCAAGTGGTACAGTCAGTTCTTTTACGACATCTC
CAAGATGGGACTCCAGAAAGGCTTCGGAGACCCGTGCCCGATGCACACGG
AGTACCTCGAGTACGGAAGAGACGAAGGGTTGTTCGATTTCAAATTTTGA
ATGAACGAGTTCAGGTTCAAGTGGTACAGTCAGTTCTTTTACGACATCTC
CAAGATGGGACTCCAGAAAGGCTTCGGAGACCCGTGCCCGATGCACACGG
AGTACCTCGAGTACGGAAGAGACGAAGGGTTGTTCGATTTCAAATTTTGA
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