mRNA_H-elongata_contig149313.3302.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig149313.3302.1
Unique NamemRNA_H-elongata_contig149313.3302.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig149313.3302.1 vs. uniprot
Match: A0A5Q4ET32_9BACT (NADAR family protein n=1 Tax=Phycisphaeraceae bacterium TaxID=2026777 RepID=A0A5Q4ET32_9BACT)

HSP 1 Score: 96.7 bits (239), Expect = 2.110e-23
Identity = 46/90 (51.11%), Postives = 64/90 (71.11%), Query Frame = 1 
Query:    1 IMASKARLFGDDMALSAILDTDDPREQKRLGRQVRHFNSDTLQKECEFIVLRGNIAKYYQTEEMRLALAYTGDRRLAEASPHDKFWAIGL 270
            +M+ KAR+FGD  AL+ I+ T +PR+QK  GR V+ F++D    EC+ +V RGN+AK+ Q +E+R  L  TGDR +AEASP D+ W IGL
Sbjct:   40 MMSEKARMFGDLDALNRIMATRNPRKQKAFGRSVKPFDADLWAAECQQVVFRGNLAKFEQNDELRELLLATGDRLIAEASPEDEVWGIGL 129
[Close]
BLAST of mRNA_H-elongata_contig149313.3302.1 vs. uniprot
Match: A0A0L0DID5_THETB (NADAR domain-containing protein n=2 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0DID5_THETB)

HSP 1 Score: 96.3 bits (238), Expect = 3.820e-23
Identity = 50/90 (55.56%), Postives = 61/90 (67.78%), Query Frame = 1 
Query:    1 IMASKARLFGDDMALSAILDTDDPREQKRLGRQVRHFNSDTLQKECEFIVLRGNIAKYYQTEEMRLALAYTGDRRLAEASPHDKFWAIGL 270
            +MA KARLFGDD  L AIL    PR+ K LGR VR+F+    + EC  IV  GN+AK+ Q+EE+  AL  TG R +AEASP+DK W IGL
Sbjct:   53 MMAGKARLFGDDEMLEAILAETSPRKIKGLGRCVRNFDDKVWKAECLAIVEAGNVAKFSQSEELAAALLATGTRTIAEASPYDKIWGIGL 142
[Close]
BLAST of mRNA_H-elongata_contig149313.3302.1 vs. uniprot
Match: A0A5S5BRJ3_9BACL (NADAR domain-containing protein n=1 Tax=Paenibacillus methanolicus TaxID=582686 RepID=A0A5S5BRJ3_9BACL)

HSP 1 Score: 93.2 bits (230), Expect = 6.570e-22
Identity = 46/90 (51.11%), Postives = 60/90 (66.67%), Query Frame = 1 
Query:    1 IMASKARLFGDDMALSAILDTDDPREQKRLGRQVRHFNSDTLQKECEFIVLRGNIAKYYQTEEMRLALAYTGDRRLAEASPHDKFWAIGL 270
            +MA KARLFGDD  L AIL +  P+E K  GR VR+F+ D   +EC  IVLRG++AK+ Q   + + L  TG+R L EASP D+ W IG+
Sbjct:   61 MMAEKARLFGDDDMLEAILKSKHPKEMKAYGRAVRNFDKDVWDRECYGIVLRGSLAKFAQNPALGVYLKSTGNRILVEASPQDRIWGIGM 150
[Close]
BLAST of mRNA_H-elongata_contig149313.3302.1 vs. uniprot
Match: UPI0003686BAF (NADAR family protein n=1 Tax=Thiofilum flexile TaxID=125627 RepID=UPI0003686BAF)

HSP 1 Score: 93.2 bits (230), Expect = 7.050e-22
Identity = 45/90 (50.00%), Postives = 61/90 (67.78%), Query Frame = 1 
Query:    1 IMASKARLFGDDMALSAILDTDDPREQKRLGRQVRHFNSDTLQKECEFIVLRGNIAKYYQTEEMRLALAYTGDRRLAEASPHDKFWAIGL 270
            +MA KARLFG++  L+AIL    P E K+LGR+VR+FN+DT  + C   V+ GN+AK+ Q   ++  L  TG+R L EASPHD  W IG+
Sbjct:   60 MMAQKARLFGNEDMLAAILTCKHPGEAKKLGRKVRNFNADTWNQHCFAYVVEGNVAKFGQNPALKAFLLGTGERVLVEASPHDSIWGIGM 149
[Close]
BLAST of mRNA_H-elongata_contig149313.3302.1 vs. uniprot
Match: A0A521TL31_9DELT (NADAR family protein n=1 Tax=Myxococcaceae bacterium TaxID=2484252 RepID=A0A521TL31_9DELT)

HSP 1 Score: 92.0 bits (227), Expect = 2.180e-21
Identity = 48/90 (53.33%), Postives = 59/90 (65.56%), Query Frame = 1 
Query:    1 IMASKARLFGDDMALSAILDTDDPREQKRLGRQVRHFNSDTLQKECEFIVLRGNIAKYYQTEEMRLALAYTGDRRLAEASPHDKFWAIGL 270
            +MA KARLFGD+  L+AIL TDDP   K+LGR+VR F+    + EC  +V RGN+AK+ Q   +R  L  TGD  L EASP D  W IGL
Sbjct:   61 MMAGKARLFGDEETLAAILATDDPAVVKKLGRKVRGFDEARWRSECFELVTRGNVAKFSQNASLRGFLLGTGDAVLVEASPFDAVWGIGL 150
[Close]
BLAST of mRNA_H-elongata_contig149313.3302.1 vs. uniprot
Match: A0A089IQ21_9BACL (NADAR domain-containing protein n=8 Tax=Paenibacillus TaxID=44249 RepID=A0A089IQ21_9BACL)

HSP 1 Score: 91.3 bits (225), Expect = 3.700e-21
Identity = 47/90 (52.22%), Postives = 58/90 (64.44%), Query Frame = 1 
Query:    1 IMASKARLFGDDMALSAILDTDDPREQKRLGRQVRHFNSDTLQKECEFIVLRGNIAKYYQTEEMRLALAYTGDRRLAEASPHDKFWAIGL 270
            +M+ KARLFGDD  L AIL    P+E K  GR VR+F +DT  KEC  IV RGNIAK+ Q  ++   L  T +R L EASP D+ W IG+
Sbjct:   61 MMSEKARLFGDDDMLDAILKAKHPKEMKAYGRAVRNFENDTWDKECYDIVKRGNIAKFSQNPKLGEYLKSTKNRILVEASPQDRIWGIGM 150
[Close]
BLAST of mRNA_H-elongata_contig149313.3302.1 vs. uniprot
Match: UPI0008382863 (NADAR family protein n=2 Tax=Paenibacillus TaxID=44249 RepID=UPI0008382863)

HSP 1 Score: 90.9 bits (224), Expect = 6.150e-21
Identity = 46/90 (51.11%), Postives = 59/90 (65.56%), Query Frame = 1 
Query:    1 IMASKARLFGDDMALSAILDTDDPREQKRLGRQVRHFNSDTLQKECEFIVLRGNIAKYYQTEEMRLALAYTGDRRLAEASPHDKFWAIGL 270
            +MA KARLFGD+  L AIL    P+E K  GR VR+F+ +   KEC  IVLRG++AK+ Q EE+   L  T +R L EASP D+ W IG+
Sbjct:   61 MMAEKARLFGDEEMLEAILKAKHPKEMKAYGRAVRNFDKNIWDKECYGIVLRGSLAKFSQNEELGRYLRSTKNRILVEASPRDRIWGIGM 150
[Close]
BLAST of mRNA_H-elongata_contig149313.3302.1 vs. uniprot
Match: A0A6H5L2E7_9PHAE (NADAR domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2E7_9PHAE)

HSP 1 Score: 91.3 bits (225), Expect = 1.450e-20
Identity = 50/90 (55.56%), Postives = 58/90 (64.44%), Query Frame = 1 
Query:    1 IMASKARLFGDDMALSAILDTDDPREQKRLGRQVRHFNSDTLQKECEFIVLRGNIAKYYQTEEMRLALAYTGDRRLAEASPHDKFWAIGL 270
            +MASKARLF D  AL  I+ T DPR QK LGRQVR F+     K    +V+RGN+AK+ Q    R  L  TGDR LAEASP+D  W IGL
Sbjct:   90 MMASKARLFNDRTALQQIMATADPRRQKALGRQVRGFDPAVWDKTGYDVVVRGNLAKFRQNPGFRDELLATGDRILAEASPYDSEWGIGL 179
[Close]
BLAST of mRNA_H-elongata_contig149313.3302.1 vs. uniprot
Match: D7G659_ECTSI (NADAR domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G659_ECTSI)

HSP 1 Score: 91.7 bits (226), Expect = 1.520e-20
Identity = 50/90 (55.56%), Postives = 59/90 (65.56%), Query Frame = 1 
Query:    1 IMASKARLFGDDMALSAILDTDDPREQKRLGRQVRHFNSDTLQKECEFIVLRGNIAKYYQTEEMRLALAYTGDRRLAEASPHDKFWAIGL 270
            +MASKARLF D  AL  I+ T DPR QK LGRQVR F+     K+   +V+RGN+AK+ Q    R  L  TGDR LAEASP+D  W IGL
Sbjct:   91 MMASKARLFNDRTALQQIMATADPRRQKALGRQVRGFDPAMWDKKGYDVVVRGNLAKFKQNPGFRDELLATGDRILAEASPYDSEWGIGL 180
[Close]
BLAST of mRNA_H-elongata_contig149313.3302.1 vs. uniprot
Match: UPI00126738C7 (NADAR family protein n=2 Tax=Paenibacillus TaxID=44249 RepID=UPI00126738C7)

HSP 1 Score: 87.0 bits (214), Expect = 1.730e-19
Identity = 43/90 (47.78%), Postives = 57/90 (63.33%), Query Frame = 1 
Query:    1 IMASKARLFGDDMALSAILDTDDPREQKRLGRQVRHFNSDTLQKECEFIVLRGNIAKYYQTEEMRLALAYTGDRRLAEASPHDKFWAIGL 270
            +MA KARLFGDD  L AI+    P+E K  GR VR+F+ D  + EC  IV RG++AK+ Q  ++   L  T +R L EASP D+ W IG+
Sbjct:   61 MMAEKARLFGDDEMLGAIMQAKHPKEMKAFGRAVRNFDKDVWESECYGIVKRGSLAKFSQNPQLGDYLKATKNRILVEASPRDRIWGIGM 150
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig149313.3302.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5Q4ET32_9BACT2.110e-2351.11NADAR family protein n=1 Tax=Phycisphaeraceae bact... [more]
A0A0L0DID5_THETB3.820e-2355.56NADAR domain-containing protein n=2 Tax=Thecamonas... [more]
A0A5S5BRJ3_9BACL6.570e-2251.11NADAR domain-containing protein n=1 Tax=Paenibacil... [more]
UPI0003686BAF7.050e-2250.00NADAR family protein n=1 Tax=Thiofilum flexile Tax... [more]
A0A521TL31_9DELT2.180e-2153.33NADAR family protein n=1 Tax=Myxococcaceae bacteri... [more]
A0A089IQ21_9BACL3.700e-2152.22NADAR domain-containing protein n=8 Tax=Paenibacil... [more]
UPI00083828636.150e-2151.11NADAR family protein n=2 Tax=Paenibacillus TaxID=4... [more]
A0A6H5L2E7_9PHAE1.450e-2055.56NADAR domain-containing protein n=1 Tax=Ectocarpus... [more]
D7G659_ECTSI1.520e-2055.56NADAR domain-containing protein n=1 Tax=Ectocarpus... [more]
UPI00126738C71.730e-1947.78NADAR family protein n=2 Tax=Paenibacillus TaxID=4... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig149313contigH-elongata_contig149313:129..398 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score97.4
Seed ortholog evalue3.5e-18
Seed eggNOG ortholog529818.AMSG_00950T0
KEGG koko:K09935
EggNOG free text desc.Domain of unknown function (DUF1768)
EggNOG OGs2S4FY@2759,COG3236@1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000
Hectar predicted targeting categoryother localisation
Exons1
Model size270
Cds size267
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929883.5003715-CDS-H-elongata_contig149313:128..3951622929883.5003715-CDS-H-elongata_contig149313:128..395Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig149313 129..395 -
1691679194.4837294-CDS-H-elongata_contig149313:128..3951691679194.4837294-CDS-H-elongata_contig149313:128..395Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig149313 129..395 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929883.5167923-UTR-H-elongata_contig149313:395..3981622929883.5167923-UTR-H-elongata_contig149313:395..398Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig149313 396..398 -
1691679194.4988682-UTR-H-elongata_contig149313:395..3981691679194.4988682-UTR-H-elongata_contig149313:395..398Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig149313 396..398 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig149313.3302.1prot_H-elongata_contig149313.3302.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig149313 129..395 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig149313.3302.1

>prot_H-elongata_contig149313.3302.1 ID=prot_H-elongata_contig149313.3302.1|Name=mRNA_H-elongata_contig149313.3302.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=89bp
MASKARLFGDDMALSAILDTDDPREQKRLGRQVRHFNSDTLQKECEFIVL
RGNIAKYYQTEEMRLALAYTGDRRLAEASPHDKFWAIGL
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mRNA from alignment at H-elongata_contig149313:129..398-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig149313.3302.1 ID=mRNA_H-elongata_contig149313.3302.1|Name=mRNA_H-elongata_contig149313.3302.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=270bp|location=Sequence derived from alignment at H-elongata_contig149313:129..398- (Himanthalia elongata Himel1 dioecious)
ATTATGGCCTCCAAAGCACGCCTTTTTGGCGACGACATGGCGCTCTCCGC
CATACTCGACACCGACGATCCTCGAGAGCAAAAACGCCTCGGCCGTCAGG
TGCGCCACTTTAATAGCGATACATTGCAGAAAGAATGCGAATTTATAGTA
CTCCGAGGCAACATCGCGAAATATTATCAAACTGAAGAGATGCGACTTGC
CCTCGCCTACACCGGTGATCGCCGTCTCGCCGAAGCCAGTCCACACGATA
AATTTTGGGCCATCGGCCTC
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Coding sequence (CDS) from alignment at H-elongata_contig149313:129..398-

>mRNA_H-elongata_contig149313.3302.1 ID=mRNA_H-elongata_contig149313.3302.1|Name=mRNA_H-elongata_contig149313.3302.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=534bp|location=Sequence derived from alignment at H-elongata_contig149313:129..398- (Himanthalia elongata Himel1 dioecious)
ATGGCCTCCAAAGCACGCCTTTTTGGCGACGACATGGCGCTCTCCGCCAT
ACTCGACACCGACGATCCTCGAGAGCAAAAACGCCTCGGCCGTCAGGTGC
GCCACTTTAATAGCGATACATTGCAGAAAGAATGCGAATTTATAGTACTC
CGAGGCAACATCGCGAAATATTATCAAACTGAAGAGATGCGACTTGCCCT
CGCCTACACCGGTGATCGCCGTCTCGCCGAAGCCAGTCCACACGATAAAT
TTTGGGCCATCGGCCTCATGGCCTCCAAAGCACGCCTTTTTGGCGACGAC
ATGGCGCTCTCCGCCATACTCGACACCGACGATCCTCGAGAGCAAAAACG
CCTCGGCCGTCAGGTGCGCCACTTTAATAGCGATACATTGCAGAAAGAAT
GCGAATTTATAGTACTCCGAGGCAACATCGCGAAATATTATCAAACTGAA
GAGATGCGACTTGCCCTCGCCTACACCGGTGATCGCCGTCTCGCCGAAGC
CAGTCCACACGATAAATTTTGGGCCATCGGCCTC
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